Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00864

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00862 and MPMX19_00863 are separated by 49 nucleotidesMPMX19_00863 and MPMX19_00864 are separated by 52 nucleotidesMPMX19_00864 and MPMX19_00865 are separated by 45 nucleotidesMPMX19_00865 and MPMX19_00866 overlap by 4 nucleotides MPMX19_00862: MPMX19_00862 - hypothetical protein, at 893,790 to 894,194 _00862 MPMX19_00863: MPMX19_00863 - Flagellar basal-body rod protein FlgC, at 894,244 to 894,654 _00863 MPMX19_00864: MPMX19_00864 - Flagellar hook-basal body complex protein FliE, at 894,707 to 895,006 _00864 MPMX19_00865: MPMX19_00865 - hypothetical protein, at 895,052 to 895,411 _00865 MPMX19_00866: MPMX19_00866 - Flagellar biosynthetic protein FliR, at 895,408 to 896,178 _00866 Position (kb) 894 895 896Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 893.708 kb on + strandat 893.708 kb on + strandat 893.708 kb on + strandat 893.708 kb on + strandat 893.709 kb on - strandat 893.709 kb on - strandat 893.709 kb on - strandat 893.709 kb on - strandat 893.709 kb on - strandat 893.709 kb on - strandat 893.709 kb on - strandat 893.709 kb on - strandat 893.716 kb on + strandat 893.716 kb on + strandat 893.717 kb on - strandat 893.717 kb on - strandat 893.901 kb on + strand, within MPMX19_00862at 893.901 kb on + strand, within MPMX19_00862at 893.901 kb on + strand, within MPMX19_00862at 893.901 kb on + strand, within MPMX19_00862at 893.901 kb on + strand, within MPMX19_00862at 893.901 kb on + strand, within MPMX19_00862at 893.901 kb on + strand, within MPMX19_00862at 893.901 kb on - strand, within MPMX19_00862at 893.902 kb on - strand, within MPMX19_00862at 893.902 kb on - strand, within MPMX19_00862at 893.902 kb on - strand, within MPMX19_00862at 893.902 kb on - strand, within MPMX19_00862at 893.902 kb on - strand, within MPMX19_00862at 893.902 kb on - strand, within MPMX19_00862at 893.902 kb on - strand, within MPMX19_00862at 893.902 kb on - strand, within MPMX19_00862at 894.048 kb on + strand, within MPMX19_00862at 894.123 kb on + strand, within MPMX19_00862at 894.123 kb on + strand, within MPMX19_00862at 894.123 kb on + strand, within MPMX19_00862at 894.124 kb on - strand, within MPMX19_00862at 894.124 kb on - strand, within MPMX19_00862at 894.124 kb on - strand, within MPMX19_00862at 894.124 kb on - strand, within MPMX19_00862at 894.124 kb on - strand, within MPMX19_00862at 894.144 kb on + strand, within MPMX19_00862at 894.144 kb on + strand, within MPMX19_00862at 894.144 kb on + strand, within MPMX19_00862at 894.145 kb on - strand, within MPMX19_00862at 894.145 kb on - strand, within MPMX19_00862at 894.145 kb on - strand, within MPMX19_00862at 894.145 kb on - strand, within MPMX19_00862at 894.145 kb on - strand, within MPMX19_00862at 894.145 kb on - strand, within MPMX19_00862at 894.145 kb on - strand, within MPMX19_00862at 894.145 kb on - strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.146 kb on + strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.147 kb on - strand, within MPMX19_00862at 894.253 kb on + strandat 894.253 kb on + strandat 894.253 kb on + strandat 894.253 kb on + strandat 894.253 kb on + strandat 894.254 kb on - strandat 894.254 kb on - strandat 894.254 kb on - strandat 894.254 kb on - strandat 894.254 kb on - strandat 894.254 kb on - strandat 894.371 kb on - strand, within MPMX19_00863at 894.478 kb on + strand, within MPMX19_00863at 894.478 kb on + strand, within MPMX19_00863at 894.478 kb on + strand, within MPMX19_00863at 894.478 kb on + strand, within MPMX19_00863at 894.478 kb on + strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.479 kb on - strand, within MPMX19_00863at 894.514 kb on + strand, within MPMX19_00863at 894.514 kb on + strand, within MPMX19_00863at 894.514 kb on + strand, within MPMX19_00863at 894.514 kb on + strand, within MPMX19_00863at 894.514 kb on + strand, within MPMX19_00863at 894.514 kb on + strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.515 kb on - strand, within MPMX19_00863at 894.580 kb on + strand, within MPMX19_00863at 894.580 kb on + strand, within MPMX19_00863at 894.580 kb on + strand, within MPMX19_00863at 894.580 kb on + strand, within MPMX19_00863at 894.580 kb on + strand, within MPMX19_00863at 894.580 kb on + strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.581 kb on - strand, within MPMX19_00863at 894.655 kb on + strandat 894.655 kb on + strandat 894.655 kb on + strandat 894.655 kb on + strandat 894.655 kb on + strandat 894.655 kb on + strandat 894.655 kb on + strandat 894.655 kb on + strandat 894.656 kb on - strandat 894.656 kb on - strandat 894.656 kb on - strandat 894.656 kb on - strandat 894.656 kb on - strandat 894.737 kb on + strand, within MPMX19_00864at 894.737 kb on + strand, within MPMX19_00864at 894.737 kb on + strand, within MPMX19_00864at 894.737 kb on + strand, within MPMX19_00864at 894.737 kb on + strand, within MPMX19_00864at 894.737 kb on + strand, within MPMX19_00864at 894.737 kb on + strand, within MPMX19_00864at 894.737 kb on + strand, within MPMX19_00864at 894.737 kb on + strand, within MPMX19_00864at 894.738 kb on - strand, within MPMX19_00864at 894.738 kb on - strand, within MPMX19_00864at 894.738 kb on - strand, within MPMX19_00864at 894.738 kb on - strand, within MPMX19_00864at 894.738 kb on - strand, within MPMX19_00864at 894.738 kb on - strand, within MPMX19_00864at 894.738 kb on - strand, within MPMX19_00864at 894.738 kb on - strand, within MPMX19_00864at 894.977 kb on + strandat 894.978 kb on - strandat 894.978 kb on - strandat 894.978 kb on - strandat 895.024 kb on + strandat 895.024 kb on + strandat 895.024 kb on + strandat 895.024 kb on + strandat 895.024 kb on + strandat 895.024 kb on + strandat 895.024 kb on + strandat 895.024 kb on + strandat 895.024 kb on + strandat 895.025 kb on - strandat 895.025 kb on - strandat 895.025 kb on - strandat 895.025 kb on - strandat 895.025 kb on - strandat 895.025 kb on - strandat 895.025 kb on - strandat 895.025 kb on - strandat 895.051 kb on + strandat 895.051 kb on + strandat 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.870 kb on + strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866at 895.871 kb on - strand, within MPMX19_00866

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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893,708 + -0.0
893,708 + -0.6
893,708 + -1.6
893,708 + -0.9
893,709 - +0.4
893,709 - -1.3
893,709 - +1.3
893,709 - -0.1
893,709 - +0.9
893,709 - +0.3
893,709 - -1.2
893,709 - -0.6
893,716 + -0.8
893,716 + -1.3
893,717 - -0.3
893,717 - +0.3
893,901 + MPMX19_00862 0.27 -0.5
893,901 + MPMX19_00862 0.27 -0.2
893,901 + MPMX19_00862 0.27 -0.1
893,901 + MPMX19_00862 0.27 +0.7
893,901 + MPMX19_00862 0.27 -0.6
893,901 + MPMX19_00862 0.27 -0.9
893,901 + MPMX19_00862 0.27 -1.1
893,901 - MPMX19_00862 0.27 -0.6
893,902 - MPMX19_00862 0.28 +2.3
893,902 - MPMX19_00862 0.28 -0.3
893,902 - MPMX19_00862 0.28 +0.5
893,902 - MPMX19_00862 0.28 -1.9
893,902 - MPMX19_00862 0.28 -0.6
893,902 - MPMX19_00862 0.28 +0.7
893,902 - MPMX19_00862 0.28 -0.5
893,902 - MPMX19_00862 0.28 -0.8
894,048 + MPMX19_00862 0.64 -0.7
894,123 + MPMX19_00862 0.82 -0.9
894,123 + MPMX19_00862 0.82 -1.6
894,123 + MPMX19_00862 0.82 +0.7
894,124 - MPMX19_00862 0.82 -0.6
894,124 - MPMX19_00862 0.82 -0.6
894,124 - MPMX19_00862 0.82 +0.1
894,124 - MPMX19_00862 0.82 -0.3
894,124 - MPMX19_00862 0.82 +1.1
894,144 + MPMX19_00862 0.87 +0.7
894,144 + MPMX19_00862 0.87 +0.7
894,144 + MPMX19_00862 0.87 +0.5
894,145 - MPMX19_00862 0.88 -1.3
894,145 - MPMX19_00862 0.88 -0.3
894,145 - MPMX19_00862 0.88 +0.7
894,145 - MPMX19_00862 0.88 +0.7
894,145 - MPMX19_00862 0.88 +0.1
894,145 - MPMX19_00862 0.88 -0.7
894,145 - MPMX19_00862 0.88 +0.7
894,145 - MPMX19_00862 0.88 -1.3
894,146 + MPMX19_00862 0.88 +0.7
894,146 + MPMX19_00862 0.88 +0.1
894,146 + MPMX19_00862 0.88 -0.9
894,146 + MPMX19_00862 0.88 -0.3
894,146 + MPMX19_00862 0.88 +2.7
894,146 + MPMX19_00862 0.88 +1.7
894,146 + MPMX19_00862 0.88 +0.1
894,146 + MPMX19_00862 0.88 -0.6
894,146 + MPMX19_00862 0.88 -0.9
894,146 + MPMX19_00862 0.88 +2.3
894,146 + MPMX19_00862 0.88 +0.4
894,146 + MPMX19_00862 0.88 +0.7
894,147 - MPMX19_00862 0.88 +2.1
894,147 - MPMX19_00862 0.88 +0.5
894,147 - MPMX19_00862 0.88 -0.2
894,147 - MPMX19_00862 0.88 -0.3
894,147 - MPMX19_00862 0.88 +1.3
894,147 - MPMX19_00862 0.88 -0.6
894,147 - MPMX19_00862 0.88 +0.2
894,147 - MPMX19_00862 0.88 +0.1
894,147 - MPMX19_00862 0.88 +0.5
894,147 - MPMX19_00862 0.88 -1.1
894,147 - MPMX19_00862 0.88 -2.0
894,147 - MPMX19_00862 0.88 +0.3
894,147 - MPMX19_00862 0.88 +0.6
894,147 - MPMX19_00862 0.88 -0.6
894,147 - MPMX19_00862 0.88 -0.3
894,147 - MPMX19_00862 0.88 +0.4
894,147 - MPMX19_00862 0.88 +1.1
894,253 + +1.1
894,253 + -0.9
894,253 + -0.3
894,253 + -0.9
894,253 + +0.7
894,254 - -1.3
894,254 - -0.3
894,254 - -1.3
894,254 - -0.9
894,254 - -0.5
894,254 - +1.1
894,371 - MPMX19_00863 0.31 -1.6
894,478 + MPMX19_00863 0.57 -0.3
894,478 + MPMX19_00863 0.57 -0.6
894,478 + MPMX19_00863 0.57 -0.3
894,478 + MPMX19_00863 0.57 +0.7
894,478 + MPMX19_00863 0.57 -0.3
894,479 - MPMX19_00863 0.57 +0.5
894,479 - MPMX19_00863 0.57 +0.2
894,479 - MPMX19_00863 0.57 -0.3
894,479 - MPMX19_00863 0.57 -0.3
894,479 - MPMX19_00863 0.57 +0.5
894,479 - MPMX19_00863 0.57 +0.7
894,479 - MPMX19_00863 0.57 +0.5
894,479 - MPMX19_00863 0.57 -0.9
894,479 - MPMX19_00863 0.57 +0.7
894,479 - MPMX19_00863 0.57 +0.4
894,479 - MPMX19_00863 0.57 +0.8
894,479 - MPMX19_00863 0.57 +0.7
894,514 + MPMX19_00863 0.66 +0.4
894,514 + MPMX19_00863 0.66 +0.1
894,514 + MPMX19_00863 0.66 +0.7
894,514 + MPMX19_00863 0.66 +0.1
894,514 + MPMX19_00863 0.66 +0.7
894,514 + MPMX19_00863 0.66 +2.7
894,515 - MPMX19_00863 0.66 -0.6
894,515 - MPMX19_00863 0.66 +0.3
894,515 - MPMX19_00863 0.66 +0.5
894,515 - MPMX19_00863 0.66 +0.2
894,515 - MPMX19_00863 0.66 +0.3
894,515 - MPMX19_00863 0.66 -0.3
894,515 - MPMX19_00863 0.66 -1.5
894,515 - MPMX19_00863 0.66 -0.5
894,515 - MPMX19_00863 0.66 -0.3
894,515 - MPMX19_00863 0.66 -1.1
894,515 - MPMX19_00863 0.66 -0.9
894,515 - MPMX19_00863 0.66 +0.5
894,515 - MPMX19_00863 0.66 -0.3
894,515 - MPMX19_00863 0.66 +0.1
894,580 + MPMX19_00863 0.82 -0.3
894,580 + MPMX19_00863 0.82 +0.1
894,580 + MPMX19_00863 0.82 +0.2
894,580 + MPMX19_00863 0.82 -0.6
894,580 + MPMX19_00863 0.82 +0.7
894,580 + MPMX19_00863 0.82 +1.7
894,581 - MPMX19_00863 0.82 +0.4
894,581 - MPMX19_00863 0.82 -0.3
894,581 - MPMX19_00863 0.82 -0.2
894,581 - MPMX19_00863 0.82 -1.1
894,581 - MPMX19_00863 0.82 +0.5
894,581 - MPMX19_00863 0.82 -0.1
894,581 - MPMX19_00863 0.82 +0.8
894,581 - MPMX19_00863 0.82 -2.0
894,581 - MPMX19_00863 0.82 -1.5
894,581 - MPMX19_00863 0.82 -0.9
894,581 - MPMX19_00863 0.82 +1.1
894,581 - MPMX19_00863 0.82 -0.1
894,655 + -0.8
894,655 + +0.6
894,655 + +0.4
894,655 + +0.7
894,655 + -1.3
894,655 + -1.3
894,655 + -1.9
894,655 + -1.5
894,656 - -0.3
894,656 - -2.7
894,656 - -1.2
894,656 - +0.5
894,656 - -0.6
894,737 + MPMX19_00864 0.10 -3.3
894,737 + MPMX19_00864 0.10 -0.1
894,737 + MPMX19_00864 0.10 -0.5
894,737 + MPMX19_00864 0.10 +0.8
894,737 + MPMX19_00864 0.10 -1.3
894,737 + MPMX19_00864 0.10 -0.2
894,737 + MPMX19_00864 0.10 -1.9
894,737 + MPMX19_00864 0.10 +1.7
894,737 + MPMX19_00864 0.10 +0.1
894,738 - MPMX19_00864 0.10 -2.2
894,738 - MPMX19_00864 0.10 -2.2
894,738 - MPMX19_00864 0.10 +1.1
894,738 - MPMX19_00864 0.10 -1.3
894,738 - MPMX19_00864 0.10 +0.1
894,738 - MPMX19_00864 0.10 -0.8
894,738 - MPMX19_00864 0.10 +1.1
894,738 - MPMX19_00864 0.10 -0.3
894,977 + -0.4
894,978 - -0.4
894,978 - +1.3
894,978 - +1.4
895,024 + +0.8
895,024 + -1.3
895,024 + -1.3
895,024 + -1.4
895,024 + +0.4
895,024 + -1.3
895,024 + -0.9
895,024 + -0.6
895,024 + -1.8
895,025 - +0.1
895,025 - -0.2
895,025 - +0.5
895,025 - +1.1
895,025 - +0.4
895,025 - +0.5
895,025 - -0.3
895,025 - -1.0
895,051 + -0.2
895,051 + -0.3
895,870 + MPMX19_00866 0.60 +0.7
895,870 + MPMX19_00866 0.60 +0.4
895,870 + MPMX19_00866 0.60 -1.3
895,870 + MPMX19_00866 0.60 +0.9
895,870 + MPMX19_00866 0.60 -1.8
895,870 + MPMX19_00866 0.60 -0.1
895,870 + MPMX19_00866 0.60 -0.4
895,870 + MPMX19_00866 0.60 -0.1
895,870 + MPMX19_00866 0.60 +1.9
895,870 + MPMX19_00866 0.60 -0.3
895,870 + MPMX19_00866 0.60 -0.2
895,870 + MPMX19_00866 0.60 -1.4
895,870 + MPMX19_00866 0.60 +0.8
895,870 + MPMX19_00866 0.60 +0.1
895,870 + MPMX19_00866 0.60 -0.4
895,870 + MPMX19_00866 0.60 +2.2
895,870 + MPMX19_00866 0.60 +0.3
895,870 + MPMX19_00866 0.60 +0.7
895,870 + MPMX19_00866 0.60 -1.6
895,870 + MPMX19_00866 0.60 -0.3
895,870 + MPMX19_00866 0.60 -1.1
895,870 + MPMX19_00866 0.60 -1.8
895,870 + MPMX19_00866 0.60 -0.2
895,870 + MPMX19_00866 0.60 +1.3
895,870 + MPMX19_00866 0.60 -0.1
895,870 + MPMX19_00866 0.60 +0.1
895,870 + MPMX19_00866 0.60 +1.1
895,871 - MPMX19_00866 0.60 -0.9
895,871 - MPMX19_00866 0.60 -0.8
895,871 - MPMX19_00866 0.60 -0.2
895,871 - MPMX19_00866 0.60 +0.1
895,871 - MPMX19_00866 0.60 -1.1
895,871 - MPMX19_00866 0.60 -0.5
895,871 - MPMX19_00866 0.60 +0.5
895,871 - MPMX19_00866 0.60 +0.1
895,871 - MPMX19_00866 0.60 -1.2
895,871 - MPMX19_00866 0.60 +0.4
895,871 - MPMX19_00866 0.60 +0.1
895,871 - MPMX19_00866 0.60 +1.7
895,871 - MPMX19_00866 0.60 +0.1
895,871 - MPMX19_00866 0.60 -1.8
895,871 - MPMX19_00866 0.60 +0.1

Or see this region's nucleotide sequence