Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00734

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00732 and MPMX19_00733 are separated by 35 nucleotidesMPMX19_00733 and MPMX19_00734 are separated by 18 nucleotidesMPMX19_00734 and MPMX19_00735 overlap by 4 nucleotidesMPMX19_00735 and MPMX19_00736 are separated by 78 nucleotides MPMX19_00732: MPMX19_00732 - Transcription antitermination protein NusB, at 754,448 to 755,035 _00732 MPMX19_00733: MPMX19_00733 - 6,7-dimethyl-8-ribityllumazine synthase 1, at 755,071 to 755,535 _00733 MPMX19_00734: MPMX19_00734 - Riboflavin biosynthesis protein RibBA, at 755,554 to 756,693 _00734 MPMX19_00735: MPMX19_00735 - Riboflavin synthase, at 756,690 to 757,277 _00735 MPMX19_00736: MPMX19_00736 - Riboflavin biosynthesis protein RibD, at 757,356 to 758,498 _00736 Position (kb) 755 756 757Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 755.146 kb on - strand, within MPMX19_00733at 755.228 kb on + strand, within MPMX19_00733at 755.228 kb on + strand, within MPMX19_00733at 755.229 kb on - strand, within MPMX19_00733at 755.229 kb on - strand, within MPMX19_00733at 755.229 kb on - strand, within MPMX19_00733at 755.282 kb on + strand, within MPMX19_00733at 755.282 kb on + strand, within MPMX19_00733at 755.283 kb on - strand, within MPMX19_00733at 755.324 kb on + strand, within MPMX19_00733at 755.324 kb on + strand, within MPMX19_00733at 755.324 kb on + strand, within MPMX19_00733at 755.324 kb on + strand, within MPMX19_00733at 755.324 kb on + strand, within MPMX19_00733at 755.324 kb on + strand, within MPMX19_00733at 755.324 kb on + strand, within MPMX19_00733at 755.324 kb on + strand, within MPMX19_00733at 755.324 kb on + strand, within MPMX19_00733at 755.324 kb on + strand, within MPMX19_00733at 755.325 kb on - strand, within MPMX19_00733at 755.325 kb on - strand, within MPMX19_00733at 755.325 kb on - strand, within MPMX19_00733at 755.325 kb on - strand, within MPMX19_00733at 755.325 kb on - strand, within MPMX19_00733at 755.325 kb on - strand, within MPMX19_00733at 755.325 kb on - strand, within MPMX19_00733at 755.325 kb on - strand, within MPMX19_00733at 755.341 kb on - strand, within MPMX19_00733at 755.341 kb on - strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.375 kb on + strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.376 kb on - strand, within MPMX19_00733at 755.417 kb on + strand, within MPMX19_00733at 755.711 kb on + strand, within MPMX19_00734at 755.711 kb on + strand, within MPMX19_00734at 755.711 kb on + strand, within MPMX19_00734at 755.712 kb on - strand, within MPMX19_00734at 755.712 kb on - strand, within MPMX19_00734at 755.712 kb on - strand, within MPMX19_00734at 755.978 kb on + strand, within MPMX19_00734at 755.979 kb on - strand, within MPMX19_00734at 755.979 kb on - strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.996 kb on + strand, within MPMX19_00734at 755.997 kb on - strand, within MPMX19_00734at 755.997 kb on - strand, within MPMX19_00734at 755.997 kb on - strand, within MPMX19_00734at 755.997 kb on - strand, within MPMX19_00734at 755.997 kb on - strand, within MPMX19_00734at 755.997 kb on - strand, within MPMX19_00734at 755.997 kb on - strand, within MPMX19_00734at 755.997 kb on - strand, within MPMX19_00734at 755.997 kb on - strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.002 kb on + strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.003 kb on - strand, within MPMX19_00734at 756.246 kb on + strand, within MPMX19_00734at 756.246 kb on + strand, within MPMX19_00734at 756.247 kb on - strand, within MPMX19_00734at 756.247 kb on - strand, within MPMX19_00734at 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.671 kb on + strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 756.672 kb on - strandat 757.290 kb on - strandat 757.357 kb on + strandat 757.357 kb on + strandat 757.357 kb on + strandat 757.357 kb on + strandat 757.357 kb on + strandat 757.357 kb on + strandat 757.357 kb on + strandat 757.357 kb on + strandat 757.357 kb on + strandat 757.357 kb on + strandat 757.358 kb on - strandat 757.358 kb on - strandat 757.358 kb on - strandat 757.358 kb on - strandat 757.358 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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755,146 - MPMX19_00733 0.16 -0.9
755,228 + MPMX19_00733 0.34 -1.9
755,228 + MPMX19_00733 0.34 +0.2
755,229 - MPMX19_00733 0.34 -0.7
755,229 - MPMX19_00733 0.34 -0.3
755,229 - MPMX19_00733 0.34 +0.3
755,282 + MPMX19_00733 0.45 +1.7
755,282 + MPMX19_00733 0.45 +0.7
755,283 - MPMX19_00733 0.46 -1.3
755,324 + MPMX19_00733 0.54 +0.1
755,324 + MPMX19_00733 0.54 -0.3
755,324 + MPMX19_00733 0.54 -0.3
755,324 + MPMX19_00733 0.54 -0.9
755,324 + MPMX19_00733 0.54 +0.7
755,324 + MPMX19_00733 0.54 +0.3
755,324 + MPMX19_00733 0.54 +0.1
755,324 + MPMX19_00733 0.54 -1.3
755,324 + MPMX19_00733 0.54 -1.9
755,324 + MPMX19_00733 0.54 +0.7
755,325 - MPMX19_00733 0.55 -1.2
755,325 - MPMX19_00733 0.55 -1.5
755,325 - MPMX19_00733 0.55 -1.3
755,325 - MPMX19_00733 0.55 +1.2
755,325 - MPMX19_00733 0.55 -2.6
755,325 - MPMX19_00733 0.55 -1.5
755,325 - MPMX19_00733 0.55 -0.7
755,325 - MPMX19_00733 0.55 -1.2
755,341 - MPMX19_00733 0.58 -1.3
755,341 - MPMX19_00733 0.58 +1.0
755,375 + MPMX19_00733 0.65 +1.7
755,375 + MPMX19_00733 0.65 -0.3
755,375 + MPMX19_00733 0.65 -2.3
755,375 + MPMX19_00733 0.65 +0.1
755,375 + MPMX19_00733 0.65 -0.1
755,375 + MPMX19_00733 0.65 -1.5
755,375 + MPMX19_00733 0.65 +1.7
755,375 + MPMX19_00733 0.65 -1.7
755,375 + MPMX19_00733 0.65 -0.3
755,375 + MPMX19_00733 0.65 +1.4
755,375 + MPMX19_00733 0.65 +2.4
755,375 + MPMX19_00733 0.65 -1.8
755,375 + MPMX19_00733 0.65 -1.3
755,375 + MPMX19_00733 0.65 -0.7
755,375 + MPMX19_00733 0.65 -1.3
755,375 + MPMX19_00733 0.65 +1.2
755,375 + MPMX19_00733 0.65 -0.3
755,375 + MPMX19_00733 0.65 -0.7
755,375 + MPMX19_00733 0.65 -0.7
755,375 + MPMX19_00733 0.65 +0.7
755,375 + MPMX19_00733 0.65 +1.1
755,375 + MPMX19_00733 0.65 +0.1
755,375 + MPMX19_00733 0.65 +1.7
755,375 + MPMX19_00733 0.65 +0.1
755,375 + MPMX19_00733 0.65 -0.3
755,375 + MPMX19_00733 0.65 -1.2
755,375 + MPMX19_00733 0.65 -0.9
755,375 + MPMX19_00733 0.65 -0.3
755,375 + MPMX19_00733 0.65 +0.1
755,375 + MPMX19_00733 0.65 +0.3
755,375 + MPMX19_00733 0.65 -0.9
755,375 + MPMX19_00733 0.65 +0.7
755,375 + MPMX19_00733 0.65 -1.5
755,376 - MPMX19_00733 0.66 +1.0
755,376 - MPMX19_00733 0.66 -0.7
755,376 - MPMX19_00733 0.66 +1.7
755,376 - MPMX19_00733 0.66 -0.8
755,376 - MPMX19_00733 0.66 +1.7
755,376 - MPMX19_00733 0.66 +1.3
755,376 - MPMX19_00733 0.66 -1.5
755,376 - MPMX19_00733 0.66 +0.1
755,376 - MPMX19_00733 0.66 +0.2
755,376 - MPMX19_00733 0.66 -1.2
755,376 - MPMX19_00733 0.66 -0.8
755,376 - MPMX19_00733 0.66 -1.2
755,376 - MPMX19_00733 0.66 +1.2
755,376 - MPMX19_00733 0.66 +0.7
755,376 - MPMX19_00733 0.66 -1.3
755,376 - MPMX19_00733 0.66 -1.9
755,376 - MPMX19_00733 0.66 +0.2
755,376 - MPMX19_00733 0.66 +1.7
755,376 - MPMX19_00733 0.66 -1.5
755,376 - MPMX19_00733 0.66 +1.7
755,376 - MPMX19_00733 0.66 -0.9
755,376 - MPMX19_00733 0.66 +0.2
755,376 - MPMX19_00733 0.66 +1.0
755,376 - MPMX19_00733 0.66 +0.4
755,376 - MPMX19_00733 0.66 -1.8
755,376 - MPMX19_00733 0.66 -0.4
755,376 - MPMX19_00733 0.66 -0.7
755,376 - MPMX19_00733 0.66 -1.1
755,417 + MPMX19_00733 0.74 +0.1
755,711 + MPMX19_00734 0.14 +0.1
755,711 + MPMX19_00734 0.14 -0.2
755,711 + MPMX19_00734 0.14 -0.3
755,712 - MPMX19_00734 0.14 +0.1
755,712 - MPMX19_00734 0.14 -0.2
755,712 - MPMX19_00734 0.14 -1.9
755,978 + MPMX19_00734 0.37 -1.5
755,979 - MPMX19_00734 0.37 -1.3
755,979 - MPMX19_00734 0.37 -0.9
755,996 + MPMX19_00734 0.39 +1.7
755,996 + MPMX19_00734 0.39 +0.7
755,996 + MPMX19_00734 0.39 -1.5
755,996 + MPMX19_00734 0.39 +0.4
755,996 + MPMX19_00734 0.39 -0.1
755,996 + MPMX19_00734 0.39 -1.7
755,996 + MPMX19_00734 0.39 -0.3
755,996 + MPMX19_00734 0.39 -0.7
755,996 + MPMX19_00734 0.39 +0.1
755,996 + MPMX19_00734 0.39 -0.6
755,996 + MPMX19_00734 0.39 -1.3
755,996 + MPMX19_00734 0.39 +0.7
755,996 + MPMX19_00734 0.39 -3.0
755,996 + MPMX19_00734 0.39 +0.1
755,996 + MPMX19_00734 0.39 -0.7
755,996 + MPMX19_00734 0.39 -0.9
755,996 + MPMX19_00734 0.39 +0.1
755,996 + MPMX19_00734 0.39 -0.3
755,996 + MPMX19_00734 0.39 +0.7
755,997 - MPMX19_00734 0.39 -2.6
755,997 - MPMX19_00734 0.39 -1.0
755,997 - MPMX19_00734 0.39 -2.3
755,997 - MPMX19_00734 0.39 +1.0
755,997 - MPMX19_00734 0.39 -0.8
755,997 - MPMX19_00734 0.39 -2.2
755,997 - MPMX19_00734 0.39 +0.1
755,997 - MPMX19_00734 0.39 +0.1
755,997 - MPMX19_00734 0.39 -1.5
756,002 + MPMX19_00734 0.39 +0.7
756,002 + MPMX19_00734 0.39 +0.7
756,002 + MPMX19_00734 0.39 -0.3
756,002 + MPMX19_00734 0.39 -1.2
756,002 + MPMX19_00734 0.39 -2.2
756,002 + MPMX19_00734 0.39 -0.7
756,002 + MPMX19_00734 0.39 -2.4
756,002 + MPMX19_00734 0.39 +0.1
756,002 + MPMX19_00734 0.39 -0.9
756,002 + MPMX19_00734 0.39 -0.9
756,002 + MPMX19_00734 0.39 +0.3
756,002 + MPMX19_00734 0.39 -0.3
756,002 + MPMX19_00734 0.39 -0.9
756,002 + MPMX19_00734 0.39 -0.2
756,002 + MPMX19_00734 0.39 -0.3
756,003 - MPMX19_00734 0.39 -1.5
756,003 - MPMX19_00734 0.39 -0.3
756,003 - MPMX19_00734 0.39 -0.7
756,003 - MPMX19_00734 0.39 -1.0
756,003 - MPMX19_00734 0.39 -0.3
756,003 - MPMX19_00734 0.39 -0.7
756,003 - MPMX19_00734 0.39 +0.1
756,003 - MPMX19_00734 0.39 -0.9
756,003 - MPMX19_00734 0.39 -1.4
756,003 - MPMX19_00734 0.39 +0.1
756,003 - MPMX19_00734 0.39 +0.9
756,003 - MPMX19_00734 0.39 -1.9
756,003 - MPMX19_00734 0.39 -0.7
756,246 + MPMX19_00734 0.61 -2.1
756,246 + MPMX19_00734 0.61 +0.9
756,247 - MPMX19_00734 0.61 -1.3
756,247 - MPMX19_00734 0.61 -1.3
756,671 + -0.8
756,671 + -0.3
756,671 + +0.1
756,671 + -0.2
756,671 + -0.7
756,671 + +0.1
756,671 + -0.3
756,671 + -0.9
756,671 + +0.1
756,671 + -0.7
756,671 + +0.1
756,671 + -1.3
756,671 + +0.3
756,671 + -0.8
756,671 + +0.1
756,672 - -0.5
756,672 - -1.3
756,672 - +1.2
756,672 - -1.4
756,672 - -1.3
756,672 - -1.5
756,672 - +0.1
756,672 - -0.7
756,672 - -2.0
756,672 - +0.7
756,672 - -2.7
756,672 - -0.7
756,672 - +0.3
757,290 - +0.8
757,357 + +0.7
757,357 + +1.1
757,357 + +0.7
757,357 + +0.1
757,357 + -0.7
757,357 + -2.8
757,357 + +0.1
757,357 + -1.0
757,357 + -1.2
757,357 + -1.2
757,358 - +0.1
757,358 - -1.5
757,358 - -1.5
757,358 - -1.5
757,358 - +1.1

Or see this region's nucleotide sequence