Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00698

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00696 and MPMX19_00697 are separated by 3 nucleotidesMPMX19_00697 and MPMX19_00698 overlap by 4 nucleotidesMPMX19_00698 and MPMX19_00699 overlap by 8 nucleotidesMPMX19_00699 and MPMX19_00700 are separated by 73 nucleotides MPMX19_00696: MPMX19_00696 - Crossover junction endodeoxyribonuclease RuvC, at 717,852 to 718,940 _00696 MPMX19_00697: MPMX19_00697 - Holliday junction ATP-dependent DNA helicase RuvA, at 718,944 to 719,570 _00697 MPMX19_00698: MPMX19_00698 - Holliday junction ATP-dependent DNA helicase RuvB, at 719,567 to 720,640 _00698 MPMX19_00699: MPMX19_00699 - Acyl-CoA thioesterase YbgC, at 720,633 to 721,121 _00699 MPMX19_00700: MPMX19_00700 - Tol-Pal system protein TolQ, at 721,195 to 721,929 _00700 Position (kb) 719 720 721Strain fitness (log2 ratio) -2 -1 0 1 2at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.633 kb on + strand, within MPMX19_00696at 718.633 kb on + strand, within MPMX19_00696at 718.633 kb on + strand, within MPMX19_00696at 719.019 kb on + strand, within MPMX19_00697at 719.460 kb on + strand, within MPMX19_00697at 719.923 kb on + strand, within MPMX19_00698at 720.119 kb on + strand, within MPMX19_00698at 720.396 kb on - strand, within MPMX19_00698at 720.479 kb on + strand, within MPMX19_00698at 720.697 kb on - strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.711 kb on + strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.712 kb on - strand, within MPMX19_00699at 720.714 kb on + strand, within MPMX19_00699at 720.714 kb on + strand, within MPMX19_00699at 720.714 kb on + strand, within MPMX19_00699at 720.714 kb on + strand, within MPMX19_00699at 720.715 kb on - strand, within MPMX19_00699at 720.715 kb on - strand, within MPMX19_00699at 720.715 kb on - strand, within MPMX19_00699at 720.715 kb on - strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.744 kb on + strand, within MPMX19_00699at 720.745 kb on - strand, within MPMX19_00699at 720.745 kb on - strand, within MPMX19_00699at 720.745 kb on - strand, within MPMX19_00699at 720.756 kb on + strand, within MPMX19_00699at 720.756 kb on + strand, within MPMX19_00699at 720.756 kb on + strand, within MPMX19_00699at 720.756 kb on + strand, within MPMX19_00699at 720.756 kb on + strand, within MPMX19_00699at 720.757 kb on - strand, within MPMX19_00699at 720.757 kb on - strand, within MPMX19_00699at 720.757 kb on - strand, within MPMX19_00699at 720.757 kb on - strand, within MPMX19_00699at 720.757 kb on - strand, within MPMX19_00699at 720.795 kb on + strand, within MPMX19_00699at 720.795 kb on + strand, within MPMX19_00699at 720.795 kb on + strand, within MPMX19_00699at 720.795 kb on + strand, within MPMX19_00699at 720.796 kb on - strand, within MPMX19_00699at 720.796 kb on - strand, within MPMX19_00699at 720.796 kb on - strand, within MPMX19_00699at 720.865 kb on + strand, within MPMX19_00699at 721.027 kb on + strand, within MPMX19_00699at 721.138 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
718,631 + MPMX19_00696 0.72 -1.1
718,631 + MPMX19_00696 0.72 +1.1
718,631 + MPMX19_00696 0.72 +1.1
718,631 + MPMX19_00696 0.72 +0.3
718,631 + MPMX19_00696 0.72 -0.1
718,631 + MPMX19_00696 0.72 -1.1
718,631 + MPMX19_00696 0.72 +1.1
718,631 + MPMX19_00696 0.72 -0.3
718,631 + MPMX19_00696 0.72 -1.1
718,633 + MPMX19_00696 0.72 -0.7
718,633 + MPMX19_00696 0.72 +0.3
718,633 + MPMX19_00696 0.72 -1.1
719,019 + MPMX19_00697 0.12 -0.3
719,460 + MPMX19_00697 0.82 -0.7
719,923 + MPMX19_00698 0.33 -0.7
720,119 + MPMX19_00698 0.51 -0.7
720,396 - MPMX19_00698 0.77 -0.7
720,479 + MPMX19_00698 0.85 +0.7
720,697 - MPMX19_00699 0.13 -1.1
720,711 + MPMX19_00699 0.16 +0.7
720,711 + MPMX19_00699 0.16 +1.7
720,711 + MPMX19_00699 0.16 -0.7
720,711 + MPMX19_00699 0.16 -1.1
720,711 + MPMX19_00699 0.16 -1.5
720,711 + MPMX19_00699 0.16 +0.7
720,711 + MPMX19_00699 0.16 -1.8
720,711 + MPMX19_00699 0.16 +1.1
720,711 + MPMX19_00699 0.16 -0.3
720,711 + MPMX19_00699 0.16 -0.9
720,712 - MPMX19_00699 0.16 +2.5
720,712 - MPMX19_00699 0.16 +0.1
720,712 - MPMX19_00699 0.16 -0.1
720,712 - MPMX19_00699 0.16 -1.5
720,712 - MPMX19_00699 0.16 +1.7
720,712 - MPMX19_00699 0.16 -0.1
720,712 - MPMX19_00699 0.16 +0.0
720,712 - MPMX19_00699 0.16 +0.2
720,712 - MPMX19_00699 0.16 -0.2
720,712 - MPMX19_00699 0.16 +1.1
720,712 - MPMX19_00699 0.16 -0.3
720,712 - MPMX19_00699 0.16 +0.5
720,714 + MPMX19_00699 0.17 -0.7
720,714 + MPMX19_00699 0.17 -0.3
720,714 + MPMX19_00699 0.17 -0.1
720,714 + MPMX19_00699 0.17 -0.3
720,715 - MPMX19_00699 0.17 +0.8
720,715 - MPMX19_00699 0.17 +0.0
720,715 - MPMX19_00699 0.17 -0.1
720,715 - MPMX19_00699 0.17 +0.9
720,744 + MPMX19_00699 0.23 -1.1
720,744 + MPMX19_00699 0.23 -2.2
720,744 + MPMX19_00699 0.23 -0.7
720,744 + MPMX19_00699 0.23 -0.7
720,744 + MPMX19_00699 0.23 +1.1
720,744 + MPMX19_00699 0.23 +0.3
720,744 + MPMX19_00699 0.23 +0.7
720,745 - MPMX19_00699 0.23 -1.3
720,745 - MPMX19_00699 0.23 -1.5
720,745 - MPMX19_00699 0.23 +0.9
720,756 + MPMX19_00699 0.25 +0.7
720,756 + MPMX19_00699 0.25 -0.3
720,756 + MPMX19_00699 0.25 -0.3
720,756 + MPMX19_00699 0.25 +0.1
720,756 + MPMX19_00699 0.25 -1.4
720,757 - MPMX19_00699 0.25 +1.1
720,757 - MPMX19_00699 0.25 +0.9
720,757 - MPMX19_00699 0.25 +0.4
720,757 - MPMX19_00699 0.25 -0.3
720,757 - MPMX19_00699 0.25 -0.5
720,795 + MPMX19_00699 0.33 -1.1
720,795 + MPMX19_00699 0.33 +0.1
720,795 + MPMX19_00699 0.33 -0.7
720,795 + MPMX19_00699 0.33 +2.7
720,796 - MPMX19_00699 0.33 -1.3
720,796 - MPMX19_00699 0.33 -1.8
720,796 - MPMX19_00699 0.33 +0.1
720,865 + MPMX19_00699 0.47 +0.1
721,027 + MPMX19_00699 0.81 +0.1
721,138 + -0.3

Or see this region's nucleotide sequence