Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00498 and MPMX19_00499 are separated by 301 nucleotides MPMX19_00499 and MPMX19_00500 are separated by 78 nucleotides MPMX19_00500 and MPMX19_00501 are separated by 10 nucleotides
MPMX19_00498: MPMX19_00498 - Sensor histidine kinase RcsC, at 499,315 to 501,720
_00498
MPMX19_00499: MPMX19_00499 - hypothetical protein, at 502,022 to 502,327
_00499
MPMX19_00500: MPMX19_00500 - hypothetical protein, at 502,406 to 503,209
_00500
MPMX19_00501: MPMX19_00501 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 503,220 to 504,407
_00501
Position (kb) 502
503 Strain fitness (log2 ratio) -2
-1
0
1 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.311 kb on + strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.312 kb on - strand, within MPMX19_00498 at 501.596 kb on + strand at 501.596 kb on + strand at 501.596 kb on + strand at 501.596 kb on + strand at 501.597 kb on - strand at 501.597 kb on - strand at 501.597 kb on - strand at 501.597 kb on - strand at 501.597 kb on - strand at 501.597 kb on - strand at 501.605 kb on + strand at 501.605 kb on + strand at 501.605 kb on + strand at 501.605 kb on + strand at 501.606 kb on - strand at 501.606 kb on - strand at 501.606 kb on - strand at 501.606 kb on - strand at 501.606 kb on - strand at 501.606 kb on - strand at 501.606 kb on - strand at 501.607 kb on + strand at 501.680 kb on - strand at 501.744 kb on + strand at 501.745 kb on - strand at 501.799 kb on + strand at 501.799 kb on + strand at 501.939 kb on + strand at 501.971 kb on + strand at 502.021 kb on + strand at 502.021 kb on + strand at 502.021 kb on + strand at 502.021 kb on + strand at 502.021 kb on + strand at 502.021 kb on + strand at 502.021 kb on + strand at 502.021 kb on + strand at 502.021 kb on + strand at 502.022 kb on - strand at 502.022 kb on - strand at 502.022 kb on - strand at 502.022 kb on - strand at 502.022 kb on - strand at 502.022 kb on - strand at 502.022 kb on - strand at 502.022 kb on - strand at 502.748 kb on + strand, within MPMX19_00500 at 502.748 kb on + strand, within MPMX19_00500 at 502.748 kb on + strand, within MPMX19_00500 at 502.748 kb on + strand, within MPMX19_00500 at 502.748 kb on + strand, within MPMX19_00500 at 502.748 kb on + strand, within MPMX19_00500 at 502.748 kb on + strand, within MPMX19_00500 at 502.748 kb on + strand, within MPMX19_00500 at 502.749 kb on - strand, within MPMX19_00500 at 502.749 kb on - strand, within MPMX19_00500 at 502.749 kb on - strand, within MPMX19_00500 at 502.749 kb on - strand, within MPMX19_00500 at 502.775 kb on + strand, within MPMX19_00500 at 502.775 kb on + strand, within MPMX19_00500 at 502.775 kb on + strand, within MPMX19_00500 at 502.776 kb on - strand, within MPMX19_00500 at 502.776 kb on - strand, within MPMX19_00500
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 501,311 + MPMX19_00498 0.83 +0.6 501,311 + MPMX19_00498 0.83 +1.6 501,311 + MPMX19_00498 0.83 -0.4 501,311 + MPMX19_00498 0.83 +0.9 501,311 + MPMX19_00498 0.83 -1.4 501,311 + MPMX19_00498 0.83 +0.0 501,311 + MPMX19_00498 0.83 -0.5 501,311 + MPMX19_00498 0.83 -0.7 501,311 + MPMX19_00498 0.83 -1.0 501,311 + MPMX19_00498 0.83 -0.4 501,311 + MPMX19_00498 0.83 +0.4 501,311 + MPMX19_00498 0.83 +0.2 501,311 + MPMX19_00498 0.83 -0.7 501,311 + MPMX19_00498 0.83 +0.2 501,311 + MPMX19_00498 0.83 -0.2 501,311 + MPMX19_00498 0.83 +0.6 501,312 - MPMX19_00498 0.83 -0.4 501,312 - MPMX19_00498 0.83 +0.9 501,312 - MPMX19_00498 0.83 +0.0 501,312 - MPMX19_00498 0.83 +0.0 501,312 - MPMX19_00498 0.83 -0.7 501,312 - MPMX19_00498 0.83 -0.7 501,312 - MPMX19_00498 0.83 -1.0 501,312 - MPMX19_00498 0.83 -2.0 501,312 - MPMX19_00498 0.83 +0.0 501,312 - MPMX19_00498 0.83 -0.7 501,312 - MPMX19_00498 0.83 -0.7 501,312 - MPMX19_00498 0.83 -0.1 501,312 - MPMX19_00498 0.83 -0.4 501,312 - MPMX19_00498 0.83 +0.3 501,312 - MPMX19_00498 0.83 -0.4 501,312 - MPMX19_00498 0.83 -0.4 501,312 - MPMX19_00498 0.83 -1.0 501,312 - MPMX19_00498 0.83 -0.4 501,596 + -0.4 501,596 + -0.4 501,596 + +1.6 501,596 + +0.0 501,597 - -0.7 501,597 - -2.5 501,597 - -1.7 501,597 - -1.0 501,597 - -0.4 501,597 - +0.6 501,605 + -0.5 501,605 + -2.5 501,605 + +0.9 501,605 + -0.2 501,606 - -0.2 501,606 - +0.4 501,606 - -1.0 501,606 - -1.4 501,606 - +0.6 501,606 - -0.4 501,606 - +0.0 501,607 + +0.0 501,680 - -1.2 501,744 + -0.7 501,745 - -0.7 501,799 + +0.8 501,799 + +0.0 501,939 + -1.2 501,971 + +0.3 502,021 + +0.3 502,021 + +1.0 502,021 + +0.9 502,021 + +1.2 502,021 + +0.9 502,021 + +0.6 502,021 + +0.1 502,021 + -1.2 502,021 + -1.0 502,022 - +0.0 502,022 - -0.7 502,022 - -0.2 502,022 - -1.2 502,022 - -1.0 502,022 - +0.0 502,022 - +0.0 502,022 - +0.0 502,748 + MPMX19_00500 0.43 -0.5 502,748 + MPMX19_00500 0.43 +0.0 502,748 + MPMX19_00500 0.43 -0.4 502,748 + MPMX19_00500 0.43 +0.0 502,748 + MPMX19_00500 0.43 -0.9 502,748 + MPMX19_00500 0.43 +0.0 502,748 + MPMX19_00500 0.43 -2.2 502,748 + MPMX19_00500 0.43 -0.7 502,749 - MPMX19_00500 0.43 -0.4 502,749 - MPMX19_00500 0.43 -2.1 502,749 - MPMX19_00500 0.43 -0.4 502,749 - MPMX19_00500 0.43 +1.6 502,775 + MPMX19_00500 0.46 -0.7 502,775 + MPMX19_00500 0.46 -1.6 502,775 + MPMX19_00500 0.46 -0.4 502,776 - MPMX19_00500 0.46 -0.7 502,776 - MPMX19_00500 0.46 -0.7
Or see this region's nucleotide sequence