Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00249 and MPMX19_00250 are separated by 190 nucleotides MPMX19_00250 and MPMX19_00251 are separated by 107 nucleotides MPMX19_00251 and MPMX19_00252 are separated by 25 nucleotides
MPMX19_00249: MPMX19_00249 - Chaperone protein HtpG, at 249,383 to 251,263
_00249
MPMX19_00250: MPMX19_00250 - hypothetical protein, at 251,454 to 252,098
_00250
MPMX19_00251: MPMX19_00251 - Tetracycline repressor protein class A from transposon 1721, at 252,206 to 252,919
_00251
MPMX19_00252: MPMX19_00252 - hypothetical protein, at 252,945 to 254,582
_00252
Position (kb) 252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.462 kb on + strand at 251.462 kb on + strand at 251.463 kb on - strand at 251.463 kb on - strand at 251.463 kb on - strand at 251.463 kb on - strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.506 kb on + strand at 251.506 kb on + strand at 251.506 kb on + strand at 251.506 kb on + strand at 251.507 kb on - strand at 251.507 kb on - strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.144 kb on - strand at 252.152 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.332 kb on + strand, within MPMX19_00251 at 252.332 kb on + strand, within MPMX19_00251 at 252.332 kb on + strand, within MPMX19_00251 at 252.332 kb on + strand, within MPMX19_00251 at 252.332 kb on + strand, within MPMX19_00251 at 252.332 kb on + strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.500 kb on + strand, within MPMX19_00251 at 252.500 kb on + strand, within MPMX19_00251 at 252.501 kb on - strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.740 kb on + strand, within MPMX19_00251 at 252.741 kb on - strand, within MPMX19_00251 at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 251,316 + -1.2 251,316 + -1.0 251,316 + -1.0 251,316 + +0.4 251,316 + -0.0 251,316 + -0.5 251,316 + -1.7 251,316 + -2.2 251,316 + -0.7 251,316 + -1.0 251,316 + +0.6 251,316 + -1.9 251,316 + -1.0 251,316 + -0.4 251,316 + +1.0 251,316 + -0.0 251,316 + -1.8 251,317 - +0.6 251,317 - -0.9 251,317 - -0.4 251,317 - -1.2 251,317 - -0.3 251,317 - -1.6 251,317 - +0.4 251,317 - -0.0 251,317 - -0.7 251,317 - -0.5 251,317 - -1.0 251,317 - -0.3 251,317 - -1.9 251,317 - -0.7 251,462 + -0.4 251,462 + -1.2 251,463 - +0.3 251,463 - +1.6 251,463 - +1.6 251,463 - -0.6 251,479 + +0.0 251,479 + +0.9 251,479 + -1.5 251,479 + +0.6 251,479 + -2.1 251,479 + +0.0 251,479 + +0.0 251,479 + -1.0 251,479 + -0.3 251,479 + -1.0 251,479 + -2.2 251,479 + +0.4 251,480 - -0.7 251,480 - -0.4 251,480 - -0.7 251,480 - -1.2 251,480 - -0.3 251,480 - -1.0 251,480 - -1.4 251,480 - +1.6 251,480 - -1.7 251,480 - +0.1 251,480 - +1.6 251,480 - -0.1 251,480 - +1.3 251,480 - -1.0 251,506 + +1.6 251,506 + +1.2 251,506 + -1.2 251,506 + +0.0 251,507 - -1.7 251,507 - -0.4 252,052 + -0.7 252,052 + +1.6 252,052 + -0.8 252,052 + +0.6 252,052 + -0.4 252,052 + +1.6 252,052 + -0.4 252,052 + -1.6 252,052 + -1.8 252,052 + -0.7 252,052 + +1.1 252,052 + -1.9 252,052 + +1.0 252,053 - -1.4 252,053 - +0.2 252,053 - -2.4 252,053 - +0.6 252,053 - -1.2 252,053 - +0.3 252,053 - -0.2 252,053 - -0.6 252,053 - -0.6 252,053 - -0.8 252,053 - -0.7 252,053 - +0.8 252,053 - +0.6 252,053 - -0.5 252,053 - +0.1 252,053 - +0.0 252,144 - +0.0 252,152 + -0.5 252,205 + -0.7 252,205 + -1.0 252,205 + +0.7 252,205 + -0.7 252,205 + +0.0 252,205 + -1.9 252,205 + +1.0 252,205 + +0.0 252,205 + -2.1 252,205 + -2.3 252,205 + +1.6 252,205 + -1.6 252,205 + +0.6 252,205 + -0.6 252,205 + -0.1 252,205 + -0.7 252,205 + -0.4 252,205 + +0.3 252,205 + -1.4 252,205 + -1.0 252,205 + -1.9 252,205 + -0.4 252,205 + -1.7 252,205 + +0.6 252,205 + -0.4 252,206 - -1.7 252,206 - -0.4 252,206 - -0.4 252,206 - -1.6 252,206 - -1.6 252,206 - -0.6 252,206 - +0.6 252,206 - +0.7 252,206 - +0.6 252,206 - -0.7 252,206 - +0.0 252,206 - -1.7 252,206 - +0.6 252,206 - -0.7 252,206 - -0.4 252,206 - +0.3 252,206 - -1.0 252,206 - -1.3 252,332 + MPMX19_00251 0.18 -1.0 252,332 + MPMX19_00251 0.18 +0.0 252,332 + MPMX19_00251 0.18 -0.3 252,332 + MPMX19_00251 0.18 -0.7 252,332 + MPMX19_00251 0.18 -1.7 252,332 + MPMX19_00251 0.18 +0.7 252,333 - MPMX19_00251 0.18 -0.7 252,333 - MPMX19_00251 0.18 -1.4 252,333 - MPMX19_00251 0.18 -0.9 252,333 - MPMX19_00251 0.18 +1.6 252,333 - MPMX19_00251 0.18 -0.9 252,333 - MPMX19_00251 0.18 -1.0 252,333 - MPMX19_00251 0.18 +0.9 252,500 + MPMX19_00251 0.41 +1.0 252,500 + MPMX19_00251 0.41 -1.0 252,501 - MPMX19_00251 0.41 -0.4 252,601 + MPMX19_00251 0.55 -1.7 252,601 + MPMX19_00251 0.55 +0.4 252,601 + MPMX19_00251 0.55 -0.8 252,601 + MPMX19_00251 0.55 -1.7 252,601 + MPMX19_00251 0.55 +1.6 252,601 + MPMX19_00251 0.55 -0.2 252,601 + MPMX19_00251 0.55 -0.6 252,601 + MPMX19_00251 0.55 +1.6 252,601 + MPMX19_00251 0.55 -0.7 252,601 + MPMX19_00251 0.55 -0.7 252,601 + MPMX19_00251 0.55 +0.4 252,602 - MPMX19_00251 0.55 +1.0 252,602 - MPMX19_00251 0.55 +0.6 252,602 - MPMX19_00251 0.55 -0.7 252,602 - MPMX19_00251 0.55 +1.6 252,602 - MPMX19_00251 0.55 -0.2 252,602 - MPMX19_00251 0.55 +0.0 252,602 - MPMX19_00251 0.55 -1.0 252,602 - MPMX19_00251 0.55 +1.6 252,602 - MPMX19_00251 0.55 -1.2 252,602 - MPMX19_00251 0.55 +0.6 252,602 - MPMX19_00251 0.55 +0.5 252,602 - MPMX19_00251 0.55 -1.1 252,602 - MPMX19_00251 0.55 -1.4 252,602 - MPMX19_00251 0.55 -0.9 252,602 - MPMX19_00251 0.55 +0.0 252,602 - MPMX19_00251 0.55 -1.2 252,602 - MPMX19_00251 0.55 -1.7 252,602 - MPMX19_00251 0.55 -0.2 252,602 - MPMX19_00251 0.55 -1.0 252,602 - MPMX19_00251 0.55 -0.5 252,620 + MPMX19_00251 0.58 -0.4 252,620 + MPMX19_00251 0.58 +1.2 252,620 + MPMX19_00251 0.58 +0.0 252,620 + MPMX19_00251 0.58 +0.9 252,620 + MPMX19_00251 0.58 -0.2 252,620 + MPMX19_00251 0.58 +1.4 252,620 + MPMX19_00251 0.58 +0.3 252,620 + MPMX19_00251 0.58 +0.1 252,620 + MPMX19_00251 0.58 +0.0 252,621 - MPMX19_00251 0.58 -0.5 252,621 - MPMX19_00251 0.58 -1.8 252,621 - MPMX19_00251 0.58 +1.6 252,621 - MPMX19_00251 0.58 +0.0 252,621 - MPMX19_00251 0.58 -1.7 252,621 - MPMX19_00251 0.58 -1.0 252,621 - MPMX19_00251 0.58 +0.2 252,621 - MPMX19_00251 0.58 -0.4 252,621 - MPMX19_00251 0.58 +0.3 252,740 + MPMX19_00251 0.75 -0.9 252,741 - MPMX19_00251 0.75 -3.1 252,946 + -0.2 252,946 + +0.0 252,946 + +0.6 252,946 + +0.0 252,946 + -1.6 252,946 + +0.0 252,946 + -0.6 252,946 + +0.6 252,946 + -1.9 252,946 + -0.4 252,947 - +0.0 252,947 - -0.4 252,947 - -1.2 252,947 - +1.0 252,947 - -1.0 252,947 - -0.6 252,947 - -1.0 252,947 - -1.1 252,947 - -0.7 252,947 - -0.4 252,947 - -0.5 252,947 - -1.0 252,947 - -1.4 253,063 + +0.9 253,063 + -0.4 253,063 + -0.4 253,063 + -1.6 253,063 + +0.3 253,063 + +0.2 253,063 + +0.4 253,063 + -1.0 253,063 + -1.0 253,063 + +0.0 253,063 + +0.0 253,063 + +0.0 253,063 + -1.7 253,063 + +0.6 253,063 + -0.7 253,063 + -1.6 253,063 + -0.4 253,063 + +0.6 253,063 + +0.6 253,063 + +0.3 253,064 - -1.4 253,064 - -0.6 253,064 - -0.2 253,064 - +0.0 253,064 - -1.5 253,064 - +0.6 253,064 - +0.2 253,064 - +1.6 253,064 - -0.7 253,064 - +1.6 253,064 - -1.0 253,064 - -2.0 253,064 - -1.9 253,064 - -2.1 253,064 - -1.2 253,064 - +0.4 253,064 - +0.0 253,064 - +0.3 253,064 - +0.6 253,064 - -0.7 253,064 - -1.6 253,849 + MPMX19_00252 0.55 -0.7 253,849 + MPMX19_00252 0.55 -0.4 253,849 + MPMX19_00252 0.55 -0.4 253,849 + MPMX19_00252 0.55 -0.7 253,849 + MPMX19_00252 0.55 +0.0 253,849 + MPMX19_00252 0.55 -0.7 253,849 + MPMX19_00252 0.55 -0.7 253,849 + MPMX19_00252 0.55 +0.1 253,849 + MPMX19_00252 0.55 -1.0 253,849 + MPMX19_00252 0.55 -1.1 253,850 - MPMX19_00252 0.55 -1.4 253,850 - MPMX19_00252 0.55 +1.0 253,850 - MPMX19_00252 0.55 +0.0 253,850 - MPMX19_00252 0.55 -1.7 253,850 - MPMX19_00252 0.55 -1.2 253,850 - MPMX19_00252 0.55 -0.4 253,850 - MPMX19_00252 0.55 -2.1 253,850 - MPMX19_00252 0.55 -1.4 253,850 - MPMX19_00252 0.55 -0.9 253,850 - MPMX19_00252 0.55 +0.9 253,850 - MPMX19_00252 0.55 +0.6
Or see this region's nucleotide sequence