Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06861

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06859 and MPMX19_06860 overlap by 4 nucleotidesMPMX19_06860 and MPMX19_06861 overlap by 4 nucleotidesMPMX19_06861 and MPMX19_06862 are separated by 11 nucleotidesMPMX19_06862 and MPMX19_06863 overlap by 4 nucleotides MPMX19_06859: MPMX19_06859 - Acetophenone carboxylase delta subunit, at 129,213 to 131,201 _06859 MPMX19_06860: MPMX19_06860 - hypothetical protein, at 131,198 to 131,506 _06860 MPMX19_06861: MPMX19_06861 - Hydrogen cyanide synthase subunit HcnB, at 131,503 to 132,888 _06861 MPMX19_06862: MPMX19_06862 - hypothetical protein, at 132,900 to 133,406 _06862 MPMX19_06863: MPMX19_06863 - hypothetical protein, at 133,403 to 133,882 _06863 Position (kb) 131 132 133Strain fitness (log2 ratio) -2 -1 0 1 2at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.986 kb on + strand, within MPMX19_06859at 130.987 kb on - strand, within MPMX19_06859at 131.013 kb on + strandat 131.014 kb on - strandat 131.014 kb on - strandat 131.014 kb on - strandat 131.638 kb on + strandat 131.638 kb on + strandat 131.638 kb on + strandat 131.639 kb on - strandat 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.839 kb on + strand, within MPMX19_06861at 131.840 kb on - strand, within MPMX19_06861at 131.914 kb on + strand, within MPMX19_06861at 131.914 kb on + strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.164 kb on - strand, within MPMX19_06861at 132.164 kb on - strand, within MPMX19_06861at 132.352 kb on + strand, within MPMX19_06861at 132.352 kb on + strand, within MPMX19_06861at 132.353 kb on - strand, within MPMX19_06861at 132.353 kb on - strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.688 kb on + strand, within MPMX19_06861at 132.688 kb on + strand, within MPMX19_06861at 132.689 kb on - strand, within MPMX19_06861at 132.758 kb on - strandat 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.262 kb on - strand, within MPMX19_06862at 133.262 kb on - strand, within MPMX19_06862at 133.410 kb on + strandat 133.410 kb on + strandat 133.410 kb on + strandat 133.437 kb on + strandat 133.437 kb on + strandat 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.725 kb on + strand, within MPMX19_06863at 133.725 kb on + strand, within MPMX19_06863at 133.726 kb on - strand, within MPMX19_06863at 133.836 kb on + strandat 133.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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130,846 - MPMX19_06859 0.82 -1.1
130,846 - MPMX19_06859 0.82 -0.8
130,846 - MPMX19_06859 0.82 +0.2
130,846 - MPMX19_06859 0.82 -0.1
130,846 - MPMX19_06859 0.82 +0.2
130,875 + MPMX19_06859 0.84 +1.3
130,875 + MPMX19_06859 0.84 -1.7
130,875 + MPMX19_06859 0.84 -1.1
130,986 + MPMX19_06859 0.89 +0.3
130,987 - MPMX19_06859 0.89 -1.9
131,013 + -0.6
131,014 - -0.2
131,014 - -1.2
131,014 - +0.3
131,638 + -1.1
131,638 + +0.5
131,638 + +0.8
131,639 - -1.2
131,683 + MPMX19_06861 0.13 +0.4
131,683 + MPMX19_06861 0.13 -0.2
131,683 + MPMX19_06861 0.13 +0.5
131,683 + MPMX19_06861 0.13 +0.2
131,683 + MPMX19_06861 0.13 -0.2
131,683 + MPMX19_06861 0.13 -0.6
131,683 + MPMX19_06861 0.13 -0.1
131,684 - MPMX19_06861 0.13 +0.2
131,684 - MPMX19_06861 0.13 -0.6
131,684 - MPMX19_06861 0.13 +0.2
131,684 - MPMX19_06861 0.13 -2.2
131,839 + MPMX19_06861 0.24 -1.9
131,840 - MPMX19_06861 0.24 +0.2
131,914 + MPMX19_06861 0.30 +1.5
131,914 + MPMX19_06861 0.30 +0.2
131,915 - MPMX19_06861 0.30 -0.2
131,915 - MPMX19_06861 0.30 -1.9
131,915 - MPMX19_06861 0.30 -0.2
132,163 + MPMX19_06861 0.48 -0.6
132,163 + MPMX19_06861 0.48 +1.0
132,163 + MPMX19_06861 0.48 +1.8
132,163 + MPMX19_06861 0.48 +0.3
132,164 - MPMX19_06861 0.48 +0.6
132,164 - MPMX19_06861 0.48 +0.2
132,352 + MPMX19_06861 0.61 +0.6
132,352 + MPMX19_06861 0.61 -0.7
132,353 - MPMX19_06861 0.61 +1.3
132,353 - MPMX19_06861 0.61 -0.1
132,418 + MPMX19_06861 0.66 +0.2
132,418 + MPMX19_06861 0.66 -1.6
132,418 + MPMX19_06861 0.66 -0.1
132,418 + MPMX19_06861 0.66 -0.1
132,419 - MPMX19_06861 0.66 -0.7
132,419 - MPMX19_06861 0.66 -1.1
132,419 - MPMX19_06861 0.66 +0.2
132,419 - MPMX19_06861 0.66 -0.7
132,419 - MPMX19_06861 0.66 -0.8
132,419 - MPMX19_06861 0.66 +0.2
132,419 - MPMX19_06861 0.66 -0.6
132,419 - MPMX19_06861 0.66 -1.0
132,419 - MPMX19_06861 0.66 -0.2
132,419 - MPMX19_06861 0.66 +0.5
132,688 + MPMX19_06861 0.85 +0.4
132,688 + MPMX19_06861 0.85 -0.6
132,689 - MPMX19_06861 0.86 -0.4
132,758 - +1.2
133,261 + MPMX19_06862 0.71 +0.8
133,261 + MPMX19_06862 0.71 +0.2
133,261 + MPMX19_06862 0.71 -1.6
133,261 + MPMX19_06862 0.71 -1.4
133,262 - MPMX19_06862 0.71 -1.3
133,262 - MPMX19_06862 0.71 -0.6
133,410 + +0.1
133,410 + +0.2
133,410 + -0.4
133,437 + -1.2
133,437 + -1.7
133,650 + MPMX19_06863 0.51 -1.7
133,650 + MPMX19_06863 0.51 -0.6
133,650 + MPMX19_06863 0.51 -0.1
133,650 + MPMX19_06863 0.51 -1.4
133,650 + MPMX19_06863 0.51 -0.7
133,725 + MPMX19_06863 0.67 +0.8
133,725 + MPMX19_06863 0.67 -1.2
133,726 - MPMX19_06863 0.67 +1.8
133,836 + +0.2
133,837 - -1.8

Or see this region's nucleotide sequence