Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06835

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06834 and MPMX19_06835 are separated by 89 nucleotidesMPMX19_06835 and MPMX19_06836 are separated by 140 nucleotides MPMX19_06834: MPMX19_06834 - Vitamin B6 salvage pathway transcriptional repressor PtsJ, at 99,062 to 100,447 _06834 MPMX19_06835: MPMX19_06835 - Leucine-responsive regulatory protein, at 100,537 to 101,043 _06835 MPMX19_06836: MPMX19_06836 - Glutarate-semialdehyde dehydrogenase, at 101,184 to 102,677 _06836 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1 2at 99.564 kb on + strand, within MPMX19_06834at 99.564 kb on + strand, within MPMX19_06834at 99.564 kb on + strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.565 kb on - strand, within MPMX19_06834at 99.840 kb on + strand, within MPMX19_06834at 99.841 kb on - strand, within MPMX19_06834at 99.841 kb on - strand, within MPMX19_06834at 99.841 kb on - strand, within MPMX19_06834at 99.841 kb on - strand, within MPMX19_06834at 99.862 kb on + strand, within MPMX19_06834at 99.862 kb on + strand, within MPMX19_06834at 99.862 kb on + strand, within MPMX19_06834at 99.862 kb on + strand, within MPMX19_06834at 99.862 kb on + strand, within MPMX19_06834at 99.863 kb on - strand, within MPMX19_06834at 99.863 kb on - strand, within MPMX19_06834at 99.863 kb on - strand, within MPMX19_06834at 99.863 kb on - strand, within MPMX19_06834at 100.182 kb on + strand, within MPMX19_06834at 100.182 kb on + strand, within MPMX19_06834at 100.182 kb on + strand, within MPMX19_06834at 100.182 kb on + strand, within MPMX19_06834at 100.182 kb on + strand, within MPMX19_06834at 100.182 kb on + strand, within MPMX19_06834at 100.182 kb on + strand, within MPMX19_06834at 100.183 kb on - strand, within MPMX19_06834at 100.183 kb on - strand, within MPMX19_06834at 100.183 kb on - strand, within MPMX19_06834at 100.183 kb on - strand, within MPMX19_06834at 100.401 kb on + strandat 100.401 kb on + strandat 100.401 kb on + strandat 100.402 kb on - strandat 100.402 kb on - strandat 100.402 kb on - strandat 100.402 kb on - strandat 100.402 kb on - strandat 100.699 kb on + strand, within MPMX19_06835at 100.861 kb on + strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.862 kb on - strand, within MPMX19_06835at 100.897 kb on + strand, within MPMX19_06835at 100.897 kb on + strand, within MPMX19_06835at 100.897 kb on + strand, within MPMX19_06835at 100.897 kb on + strand, within MPMX19_06835at 100.898 kb on - strand, within MPMX19_06835at 100.898 kb on - strand, within MPMX19_06835at 100.948 kb on + strand, within MPMX19_06835at 100.948 kb on + strand, within MPMX19_06835at 100.949 kb on - strand, within MPMX19_06835at 100.949 kb on - strand, within MPMX19_06835at 100.957 kb on + strand, within MPMX19_06835at 100.957 kb on + strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 100.958 kb on - strand, within MPMX19_06835at 101.044 kb on + strandat 101.045 kb on - strandat 101.045 kb on - strandat 101.125 kb on - strandat 101.134 kb on - strandat 101.134 kb on - strandat 101.169 kb on - strandat 101.265 kb on + strandat 101.265 kb on + strandat 101.266 kb on - strandat 101.266 kb on - strandat 101.266 kb on - strandat 101.556 kb on + strand, within MPMX19_06836at 101.580 kb on + strand, within MPMX19_06836at 101.580 kb on + strand, within MPMX19_06836at 101.580 kb on + strand, within MPMX19_06836at 101.581 kb on - strand, within MPMX19_06836

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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99,564 + MPMX19_06834 0.36 +1.2
99,564 + MPMX19_06834 0.36 +1.3
99,564 + MPMX19_06834 0.36 -1.0
99,565 - MPMX19_06834 0.36 -0.1
99,565 - MPMX19_06834 0.36 -0.2
99,565 - MPMX19_06834 0.36 -1.2
99,565 - MPMX19_06834 0.36 +0.3
99,565 - MPMX19_06834 0.36 -0.2
99,565 - MPMX19_06834 0.36 -1.1
99,565 - MPMX19_06834 0.36 -0.6
99,840 + MPMX19_06834 0.56 -1.1
99,841 - MPMX19_06834 0.56 -1.4
99,841 - MPMX19_06834 0.56 -0.4
99,841 - MPMX19_06834 0.56 -0.8
99,841 - MPMX19_06834 0.56 -0.8
99,862 + MPMX19_06834 0.58 +0.4
99,862 + MPMX19_06834 0.58 -1.7
99,862 + MPMX19_06834 0.58 -1.2
99,862 + MPMX19_06834 0.58 -0.7
99,862 + MPMX19_06834 0.58 -0.7
99,863 - MPMX19_06834 0.58 -1.2
99,863 - MPMX19_06834 0.58 -1.2
99,863 - MPMX19_06834 0.58 -1.6
99,863 - MPMX19_06834 0.58 +0.8
100,182 + MPMX19_06834 0.81 +1.8
100,182 + MPMX19_06834 0.81 -1.2
100,182 + MPMX19_06834 0.81 -0.8
100,182 + MPMX19_06834 0.81 -0.9
100,182 + MPMX19_06834 0.81 -1.1
100,182 + MPMX19_06834 0.81 -0.5
100,182 + MPMX19_06834 0.81 -1.3
100,183 - MPMX19_06834 0.81 -0.5
100,183 - MPMX19_06834 0.81 +0.4
100,183 - MPMX19_06834 0.81 -1.1
100,183 - MPMX19_06834 0.81 +1.2
100,401 + -0.3
100,401 + -0.2
100,401 + -0.6
100,402 - -1.1
100,402 - +1.0
100,402 - -0.6
100,402 - -1.6
100,402 - -0.2
100,699 + MPMX19_06835 0.32 -0.2
100,861 + MPMX19_06835 0.64 -0.1
100,862 - MPMX19_06835 0.64 -0.4
100,862 - MPMX19_06835 0.64 -0.6
100,862 - MPMX19_06835 0.64 -1.8
100,862 - MPMX19_06835 0.64 -2.1
100,862 - MPMX19_06835 0.64 -0.2
100,862 - MPMX19_06835 0.64 -1.1
100,862 - MPMX19_06835 0.64 -0.4
100,862 - MPMX19_06835 0.64 -1.1
100,897 + MPMX19_06835 0.71 -1.7
100,897 + MPMX19_06835 0.71 +0.2
100,897 + MPMX19_06835 0.71 -1.2
100,897 + MPMX19_06835 0.71 -0.2
100,898 - MPMX19_06835 0.71 +0.8
100,898 - MPMX19_06835 0.71 +0.2
100,948 + MPMX19_06835 0.81 -0.6
100,948 + MPMX19_06835 0.81 +0.2
100,949 - MPMX19_06835 0.81 -0.5
100,949 - MPMX19_06835 0.81 +1.3
100,957 + MPMX19_06835 0.83 -1.2
100,957 + MPMX19_06835 0.83 -1.4
100,958 - MPMX19_06835 0.83 +0.2
100,958 - MPMX19_06835 0.83 -1.6
100,958 - MPMX19_06835 0.83 -0.8
100,958 - MPMX19_06835 0.83 -0.2
100,958 - MPMX19_06835 0.83 +0.2
100,958 - MPMX19_06835 0.83 -1.8
100,958 - MPMX19_06835 0.83 -0.1
100,958 - MPMX19_06835 0.83 +0.1
100,958 - MPMX19_06835 0.83 +0.4
100,958 - MPMX19_06835 0.83 -1.7
100,958 - MPMX19_06835 0.83 +0.2
100,958 - MPMX19_06835 0.83 +0.4
100,958 - MPMX19_06835 0.83 +0.3
100,958 - MPMX19_06835 0.83 -0.7
100,958 - MPMX19_06835 0.83 +1.8
101,044 + +1.1
101,045 - -0.9
101,045 - -0.4
101,125 - +0.5
101,134 - +0.2
101,134 - +2.2
101,169 - -1.1
101,265 + -0.8
101,265 + -1.6
101,266 - -1.9
101,266 - -0.2
101,266 - +0.3
101,556 + MPMX19_06836 0.25 +1.8
101,580 + MPMX19_06836 0.27 +1.8
101,580 + MPMX19_06836 0.27 +0.4
101,580 + MPMX19_06836 0.27 -1.2
101,581 - MPMX19_06836 0.27 -1.1

Or see this region's nucleotide sequence