Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06399

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06398 and MPMX19_06399 are separated by 153 nucleotidesMPMX19_06399 and MPMX19_06400 are separated by 8 nucleotides MPMX19_06398: MPMX19_06398 - Silver exporting P-type ATPase, at 162,431 to 164,830 _06398 MPMX19_06399: MPMX19_06399 - hypothetical protein, at 164,984 to 165,451 _06399 MPMX19_06400: MPMX19_06400 - Protease HtpX, at 165,460 to 166,422 _06400 Position (kb) 164 165 166Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 164.082 kb on + strand, within MPMX19_06398at 164.082 kb on + strand, within MPMX19_06398at 164.082 kb on + strand, within MPMX19_06398at 164.082 kb on + strand, within MPMX19_06398at 164.082 kb on + strand, within MPMX19_06398at 164.082 kb on + strand, within MPMX19_06398at 164.082 kb on + strand, within MPMX19_06398at 164.082 kb on + strand, within MPMX19_06398at 164.083 kb on - strand, within MPMX19_06398at 164.083 kb on - strand, within MPMX19_06398at 164.083 kb on - strand, within MPMX19_06398at 164.083 kb on - strand, within MPMX19_06398at 164.083 kb on - strand, within MPMX19_06398at 164.083 kb on - strand, within MPMX19_06398at 164.083 kb on - strand, within MPMX19_06398at 164.083 kb on - strand, within MPMX19_06398at 164.083 kb on - strand, within MPMX19_06398at 164.083 kb on - strand, within MPMX19_06398at 164.086 kb on - strand, within MPMX19_06398at 164.086 kb on - strand, within MPMX19_06398at 164.166 kb on + strand, within MPMX19_06398at 164.166 kb on + strand, within MPMX19_06398at 164.166 kb on + strand, within MPMX19_06398at 164.167 kb on - strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.538 kb on + strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.539 kb on - strand, within MPMX19_06398at 164.610 kb on + strandat 164.610 kb on + strandat 164.610 kb on + strandat 164.610 kb on + strandat 164.611 kb on - strandat 164.611 kb on - strandat 164.611 kb on - strandat 164.611 kb on - strandat 164.611 kb on - strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.746 kb on + strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 164.747 kb on - strandat 165.120 kb on + strand, within MPMX19_06399at 165.120 kb on + strand, within MPMX19_06399at 165.121 kb on - strand, within MPMX19_06399at 165.121 kb on - strand, within MPMX19_06399at 165.121 kb on - strand, within MPMX19_06399at 165.193 kb on + strand, within MPMX19_06399at 165.193 kb on + strand, within MPMX19_06399at 165.194 kb on - strand, within MPMX19_06399at 165.194 kb on - strand, within MPMX19_06399at 165.194 kb on - strand, within MPMX19_06399at 165.224 kb on + strand, within MPMX19_06399at 165.225 kb on - strand, within MPMX19_06399at 165.439 kb on + strandat 165.439 kb on + strandat 165.439 kb on + strandat 165.439 kb on + strandat 165.519 kb on + strandat 165.519 kb on + strandat 165.519 kb on + strandat 165.519 kb on + strandat 165.519 kb on + strandat 165.520 kb on - strandat 165.520 kb on - strandat 165.520 kb on - strandat 165.520 kb on - strandat 165.564 kb on + strand, within MPMX19_06400at 165.564 kb on + strand, within MPMX19_06400at 165.565 kb on - strand, within MPMX19_06400at 165.565 kb on - strand, within MPMX19_06400at 165.565 kb on - strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.663 kb on + strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.664 kb on - strand, within MPMX19_06400at 165.686 kb on + strand, within MPMX19_06400at 165.915 kb on + strand, within MPMX19_06400at 165.915 kb on + strand, within MPMX19_06400at 165.916 kb on - strand, within MPMX19_06400at 165.916 kb on - strand, within MPMX19_06400at 165.936 kb on + strand, within MPMX19_06400at 165.936 kb on + strand, within MPMX19_06400at 165.936 kb on + strand, within MPMX19_06400at 165.936 kb on + strand, within MPMX19_06400at 165.936 kb on + strand, within MPMX19_06400at 165.936 kb on + strand, within MPMX19_06400at 165.937 kb on - strand, within MPMX19_06400at 165.937 kb on - strand, within MPMX19_06400at 165.937 kb on - strand, within MPMX19_06400at 165.937 kb on - strand, within MPMX19_06400at 166.056 kb on + strand, within MPMX19_06400at 166.056 kb on + strand, within MPMX19_06400at 166.056 kb on + strand, within MPMX19_06400at 166.057 kb on - strand, within MPMX19_06400at 166.057 kb on - strand, within MPMX19_06400at 166.112 kb on + strand, within MPMX19_06400at 166.112 kb on + strand, within MPMX19_06400at 166.113 kb on - strand, within MPMX19_06400at 166.113 kb on - strand, within MPMX19_06400at 166.113 kb on - strand, within MPMX19_06400at 166.156 kb on + strand, within MPMX19_06400at 166.214 kb on + strand, within MPMX19_06400at 166.215 kb on - strand, within MPMX19_06400at 166.258 kb on + strand, within MPMX19_06400at 166.258 kb on + strand, within MPMX19_06400at 166.258 kb on + strand, within MPMX19_06400

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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164,082 + MPMX19_06398 0.69 -1.1
164,082 + MPMX19_06398 0.69 +0.1
164,082 + MPMX19_06398 0.69 +0.5
164,082 + MPMX19_06398 0.69 -0.9
164,082 + MPMX19_06398 0.69 +0.6
164,082 + MPMX19_06398 0.69 +0.1
164,082 + MPMX19_06398 0.69 -1.5
164,082 + MPMX19_06398 0.69 -1.2
164,083 - MPMX19_06398 0.69 -0.2
164,083 - MPMX19_06398 0.69 -2.2
164,083 - MPMX19_06398 0.69 -0.2
164,083 - MPMX19_06398 0.69 -0.6
164,083 - MPMX19_06398 0.69 -0.2
164,083 - MPMX19_06398 0.69 -2.6
164,083 - MPMX19_06398 0.69 +0.4
164,083 - MPMX19_06398 0.69 +0.2
164,083 - MPMX19_06398 0.69 -0.9
164,083 - MPMX19_06398 0.69 -2.4
164,086 - MPMX19_06398 0.69 -1.5
164,086 - MPMX19_06398 0.69 -0.9
164,166 + MPMX19_06398 0.72 -0.8
164,166 + MPMX19_06398 0.72 -0.2
164,166 + MPMX19_06398 0.72 -0.7
164,167 - MPMX19_06398 0.72 -0.4
164,538 + MPMX19_06398 0.88 -1.5
164,538 + MPMX19_06398 0.88 +0.3
164,538 + MPMX19_06398 0.88 +0.1
164,538 + MPMX19_06398 0.88 +0.1
164,538 + MPMX19_06398 0.88 -0.5
164,538 + MPMX19_06398 0.88 -1.1
164,538 + MPMX19_06398 0.88 -0.4
164,538 + MPMX19_06398 0.88 -0.3
164,538 + MPMX19_06398 0.88 +0.8
164,538 + MPMX19_06398 0.88 -0.1
164,538 + MPMX19_06398 0.88 +0.1
164,538 + MPMX19_06398 0.88 +1.6
164,538 + MPMX19_06398 0.88 -1.2
164,538 + MPMX19_06398 0.88 -0.4
164,538 + MPMX19_06398 0.88 -0.7
164,538 + MPMX19_06398 0.88 -1.3
164,538 + MPMX19_06398 0.88 -0.4
164,539 - MPMX19_06398 0.88 -0.4
164,539 - MPMX19_06398 0.88 +0.1
164,539 - MPMX19_06398 0.88 +0.9
164,539 - MPMX19_06398 0.88 -1.3
164,539 - MPMX19_06398 0.88 -0.6
164,539 - MPMX19_06398 0.88 +0.9
164,539 - MPMX19_06398 0.88 -1.8
164,539 - MPMX19_06398 0.88 -1.1
164,539 - MPMX19_06398 0.88 -1.2
164,539 - MPMX19_06398 0.88 -0.8
164,539 - MPMX19_06398 0.88 -1.9
164,539 - MPMX19_06398 0.88 -1.6
164,539 - MPMX19_06398 0.88 -0.7
164,539 - MPMX19_06398 0.88 -1.5
164,539 - MPMX19_06398 0.88 -1.2
164,539 - MPMX19_06398 0.88 -0.4
164,610 + +0.4
164,610 + -0.4
164,610 + -0.5
164,610 + -0.6
164,611 - -0.2
164,611 - +2.2
164,611 - -0.6
164,611 - -1.2
164,611 - -1.2
164,746 + -0.7
164,746 + -0.9
164,746 + -1.4
164,746 + -1.1
164,746 + -0.9
164,746 + -0.3
164,746 + -1.4
164,746 + -0.4
164,746 + +1.3
164,746 + +0.3
164,746 + -0.4
164,746 + -0.5
164,746 + -1.5
164,746 + +2.6
164,746 + -0.7
164,746 + -1.2
164,746 + +0.1
164,746 + -0.7
164,746 + -1.2
164,746 + +0.1
164,746 + -1.2
164,747 - -0.7
164,747 - -0.5
164,747 - -0.8
164,747 - +0.1
164,747 - +0.1
164,747 - -0.7
164,747 - -1.2
164,747 - -0.4
164,747 - -1.2
164,747 - -0.9
164,747 - -0.4
164,747 - -0.7
164,747 - -1.2
164,747 - -1.2
164,747 - -2.1
165,120 + MPMX19_06399 0.29 +0.6
165,120 + MPMX19_06399 0.29 -0.9
165,121 - MPMX19_06399 0.29 -0.7
165,121 - MPMX19_06399 0.29 -1.5
165,121 - MPMX19_06399 0.29 -1.4
165,193 + MPMX19_06399 0.45 -1.9
165,193 + MPMX19_06399 0.45 +0.3
165,194 - MPMX19_06399 0.45 +0.6
165,194 - MPMX19_06399 0.45 -1.7
165,194 - MPMX19_06399 0.45 -0.8
165,224 + MPMX19_06399 0.51 +1.1
165,225 - MPMX19_06399 0.51 -1.2
165,439 + -0.8
165,439 + -0.1
165,439 + -1.7
165,439 + +0.6
165,519 + -0.8
165,519 + -1.4
165,519 + -0.9
165,519 + +0.3
165,519 + +1.6
165,520 - +0.2
165,520 - +0.3
165,520 - +1.1
165,520 - -1.5
165,564 + MPMX19_06400 0.11 -2.9
165,564 + MPMX19_06400 0.11 +1.6
165,565 - MPMX19_06400 0.11 +0.2
165,565 - MPMX19_06400 0.11 -1.9
165,565 - MPMX19_06400 0.11 -0.5
165,663 + MPMX19_06400 0.21 +0.3
165,663 + MPMX19_06400 0.21 +0.2
165,663 + MPMX19_06400 0.21 +0.8
165,663 + MPMX19_06400 0.21 +0.7
165,663 + MPMX19_06400 0.21 +1.1
165,663 + MPMX19_06400 0.21 -0.2
165,663 + MPMX19_06400 0.21 +0.6
165,663 + MPMX19_06400 0.21 -1.7
165,663 + MPMX19_06400 0.21 -2.7
165,663 + MPMX19_06400 0.21 +0.1
165,663 + MPMX19_06400 0.21 -1.8
165,663 + MPMX19_06400 0.21 -1.2
165,663 + MPMX19_06400 0.21 -0.5
165,663 + MPMX19_06400 0.21 +0.5
165,663 + MPMX19_06400 0.21 -1.8
165,663 + MPMX19_06400 0.21 -0.1
165,664 - MPMX19_06400 0.21 +0.1
165,664 - MPMX19_06400 0.21 -0.2
165,664 - MPMX19_06400 0.21 -0.8
165,664 - MPMX19_06400 0.21 +0.1
165,664 - MPMX19_06400 0.21 -0.6
165,664 - MPMX19_06400 0.21 -0.9
165,664 - MPMX19_06400 0.21 -0.5
165,664 - MPMX19_06400 0.21 -1.5
165,664 - MPMX19_06400 0.21 -0.5
165,664 - MPMX19_06400 0.21 -0.7
165,664 - MPMX19_06400 0.21 -0.7
165,664 - MPMX19_06400 0.21 -0.5
165,664 - MPMX19_06400 0.21 +0.3
165,664 - MPMX19_06400 0.21 -0.8
165,664 - MPMX19_06400 0.21 +0.3
165,664 - MPMX19_06400 0.21 +0.3
165,686 + MPMX19_06400 0.23 -0.4
165,915 + MPMX19_06400 0.47 -0.7
165,915 + MPMX19_06400 0.47 -0.5
165,916 - MPMX19_06400 0.47 -1.3
165,916 - MPMX19_06400 0.47 -0.2
165,936 + MPMX19_06400 0.49 +0.1
165,936 + MPMX19_06400 0.49 -0.8
165,936 + MPMX19_06400 0.49 +0.2
165,936 + MPMX19_06400 0.49 -0.6
165,936 + MPMX19_06400 0.49 -1.4
165,936 + MPMX19_06400 0.49 -1.6
165,937 - MPMX19_06400 0.50 -0.7
165,937 - MPMX19_06400 0.50 +0.2
165,937 - MPMX19_06400 0.50 -0.2
165,937 - MPMX19_06400 0.50 -0.4
166,056 + MPMX19_06400 0.62 +0.6
166,056 + MPMX19_06400 0.62 +0.1
166,056 + MPMX19_06400 0.62 -0.9
166,057 - MPMX19_06400 0.62 +0.6
166,057 - MPMX19_06400 0.62 +0.6
166,112 + MPMX19_06400 0.68 +0.1
166,112 + MPMX19_06400 0.68 +0.8
166,113 - MPMX19_06400 0.68 -1.4
166,113 - MPMX19_06400 0.68 -0.7
166,113 - MPMX19_06400 0.68 -0.9
166,156 + MPMX19_06400 0.72 -1.4
166,214 + MPMX19_06400 0.78 -1.5
166,215 - MPMX19_06400 0.78 -0.7
166,258 + MPMX19_06400 0.83 -0.4
166,258 + MPMX19_06400 0.83 -0.9
166,258 + MPMX19_06400 0.83 +0.9

Or see this region's nucleotide sequence