Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06354

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06353 and MPMX19_06354 are separated by 744 nucleotidesMPMX19_06354 and MPMX19_06355 are separated by 881 nucleotides MPMX19_06353: MPMX19_06353 - hypothetical protein, at 118,455 to 118,811 _06353 MPMX19_06354: MPMX19_06354 - Methyl-accepting chemotaxis protein, at 119,556 to 121,403 _06354 MPMX19_06355: MPMX19_06355 - hypothetical protein, at 122,285 to 122,623 _06355 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 118.582 kb on + strand, within MPMX19_06353at 118.594 kb on + strand, within MPMX19_06353at 118.595 kb on - strand, within MPMX19_06353at 118.803 kb on - strandat 118.899 kb on + strandat 119.047 kb on + strandat 119.047 kb on + strandat 119.048 kb on - strandat 119.048 kb on - strandat 119.048 kb on - strandat 119.048 kb on - strandat 119.048 kb on - strandat 119.260 kb on - strandat 119.260 kb on - strandat 119.260 kb on - strandat 119.383 kb on + strandat 119.383 kb on + strandat 119.393 kb on + strandat 119.393 kb on + strandat 119.393 kb on + strandat 119.393 kb on + strandat 119.394 kb on - strandat 119.394 kb on - strandat 119.394 kb on - strandat 119.394 kb on - strandat 119.394 kb on - strandat 119.556 kb on - strandat 119.663 kb on - strandat 119.689 kb on + strandat 120.041 kb on + strand, within MPMX19_06354at 120.041 kb on + strand, within MPMX19_06354at 120.041 kb on + strand, within MPMX19_06354at 120.041 kb on + strand, within MPMX19_06354at 120.042 kb on - strand, within MPMX19_06354at 120.042 kb on - strand, within MPMX19_06354at 120.042 kb on - strand, within MPMX19_06354at 120.042 kb on - strand, within MPMX19_06354at 120.540 kb on + strand, within MPMX19_06354at 120.541 kb on - strand, within MPMX19_06354at 120.622 kb on + strand, within MPMX19_06354at 120.622 kb on + strand, within MPMX19_06354at 120.622 kb on + strand, within MPMX19_06354at 120.622 kb on + strand, within MPMX19_06354at 120.622 kb on + strand, within MPMX19_06354at 120.622 kb on + strand, within MPMX19_06354at 120.622 kb on + strand, within MPMX19_06354at 120.622 kb on + strand, within MPMX19_06354at 120.622 kb on + strand, within MPMX19_06354at 120.622 kb on + strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.623 kb on - strand, within MPMX19_06354at 120.953 kb on + strand, within MPMX19_06354at 121.210 kb on + strand, within MPMX19_06354at 121.210 kb on + strand, within MPMX19_06354at 121.210 kb on + strand, within MPMX19_06354at 121.210 kb on + strand, within MPMX19_06354at 121.210 kb on + strand, within MPMX19_06354at 121.211 kb on - strand, within MPMX19_06354at 121.211 kb on - strand, within MPMX19_06354at 121.211 kb on - strand, within MPMX19_06354at 121.211 kb on - strand, within MPMX19_06354at 121.211 kb on - strand, within MPMX19_06354at 121.274 kb on + strandat 121.275 kb on - strandat 121.564 kb on + strandat 121.564 kb on + strandat 121.643 kb on - strandat 121.741 kb on + strandat 121.742 kb on - strandat 121.820 kb on + strandat 121.820 kb on + strandat 121.820 kb on + strandat 121.820 kb on + strandat 121.821 kb on - strandat 121.821 kb on - strandat 121.821 kb on - strandat 121.821 kb on - strandat 121.821 kb on - strandat 121.841 kb on + strandat 121.841 kb on + strandat 121.841 kb on + strandat 121.842 kb on - strandat 121.923 kb on + strandat 121.923 kb on + strandat 121.923 kb on + strandat 122.195 kb on + strandat 122.195 kb on + strandat 122.196 kb on - strandat 122.196 kb on - strandat 122.196 kb on - strandat 122.196 kb on - strandat 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.354 kb on + strand, within MPMX19_06355at 122.355 kb on - strand, within MPMX19_06355at 122.355 kb on - strand, within MPMX19_06355at 122.355 kb on - strand, within MPMX19_06355at 122.355 kb on - strand, within MPMX19_06355at 122.355 kb on - strand, within MPMX19_06355

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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118,582 + MPMX19_06353 0.36 -0.9
118,594 + MPMX19_06353 0.39 +0.6
118,595 - MPMX19_06353 0.39 -1.9
118,803 - -0.8
118,899 + +0.6
119,047 + -0.6
119,047 + -1.5
119,048 - -0.9
119,048 - -0.7
119,048 - -0.4
119,048 - -0.9
119,048 - +0.4
119,260 - -1.4
119,260 - +1.3
119,260 - -0.9
119,383 + +0.1
119,383 + +0.3
119,393 + +0.4
119,393 + +0.9
119,393 + +0.1
119,393 + +0.1
119,394 - -1.2
119,394 - -1.5
119,394 - +0.6
119,394 - +0.6
119,394 - -1.9
119,556 - -1.9
119,663 - -0.9
119,689 + -0.4
120,041 + MPMX19_06354 0.26 +2.4
120,041 + MPMX19_06354 0.26 -1.8
120,041 + MPMX19_06354 0.26 -0.4
120,041 + MPMX19_06354 0.26 -1.9
120,042 - MPMX19_06354 0.26 +0.2
120,042 - MPMX19_06354 0.26 +0.1
120,042 - MPMX19_06354 0.26 -0.7
120,042 - MPMX19_06354 0.26 -0.4
120,540 + MPMX19_06354 0.53 -1.7
120,541 - MPMX19_06354 0.53 +0.2
120,622 + MPMX19_06354 0.58 +0.6
120,622 + MPMX19_06354 0.58 +0.6
120,622 + MPMX19_06354 0.58 +0.8
120,622 + MPMX19_06354 0.58 -0.5
120,622 + MPMX19_06354 0.58 -0.7
120,622 + MPMX19_06354 0.58 +0.3
120,622 + MPMX19_06354 0.58 +0.3
120,622 + MPMX19_06354 0.58 -0.9
120,622 + MPMX19_06354 0.58 -0.4
120,622 + MPMX19_06354 0.58 -0.7
120,623 - MPMX19_06354 0.58 -0.4
120,623 - MPMX19_06354 0.58 +0.1
120,623 - MPMX19_06354 0.58 +0.6
120,623 - MPMX19_06354 0.58 -0.1
120,623 - MPMX19_06354 0.58 -1.1
120,623 - MPMX19_06354 0.58 -0.9
120,623 - MPMX19_06354 0.58 -1.3
120,623 - MPMX19_06354 0.58 -0.3
120,623 - MPMX19_06354 0.58 +0.1
120,623 - MPMX19_06354 0.58 -0.5
120,623 - MPMX19_06354 0.58 +1.6
120,953 + MPMX19_06354 0.76 -0.4
121,210 + MPMX19_06354 0.90 -1.3
121,210 + MPMX19_06354 0.90 -1.7
121,210 + MPMX19_06354 0.90 -0.7
121,210 + MPMX19_06354 0.90 -0.2
121,210 + MPMX19_06354 0.90 -1.6
121,211 - MPMX19_06354 0.90 -1.4
121,211 - MPMX19_06354 0.90 +0.6
121,211 - MPMX19_06354 0.90 -0.8
121,211 - MPMX19_06354 0.90 +1.1
121,211 - MPMX19_06354 0.90 +0.6
121,274 + +0.6
121,275 - -2.2
121,564 + +0.6
121,564 + +0.6
121,643 - +0.3
121,741 + -1.4
121,742 - -0.5
121,820 + -0.7
121,820 + -0.4
121,820 + +0.4
121,820 + -0.5
121,821 - -0.1
121,821 - +0.9
121,821 - -0.7
121,821 - -0.1
121,821 - -0.4
121,841 + -0.4
121,841 + +1.2
121,841 + -1.1
121,842 - -0.5
121,923 + -0.4
121,923 + +0.9
121,923 + -0.9
122,195 + +0.2
122,195 + +0.6
122,196 - -0.9
122,196 - -0.4
122,196 - +0.1
122,196 - -2.2
122,354 + MPMX19_06355 0.20 -0.9
122,354 + MPMX19_06355 0.20 +0.1
122,354 + MPMX19_06355 0.20 -1.9
122,354 + MPMX19_06355 0.20 -0.9
122,354 + MPMX19_06355 0.20 -1.2
122,354 + MPMX19_06355 0.20 +0.5
122,354 + MPMX19_06355 0.20 -0.2
122,354 + MPMX19_06355 0.20 -0.2
122,354 + MPMX19_06355 0.20 +0.1
122,354 + MPMX19_06355 0.20 -0.9
122,355 - MPMX19_06355 0.21 -1.7
122,355 - MPMX19_06355 0.21 -1.6
122,355 - MPMX19_06355 0.21 +0.3
122,355 - MPMX19_06355 0.21 +0.6
122,355 - MPMX19_06355 0.21 -0.7

Or see this region's nucleotide sequence