Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06180 and MPMX19_06181 overlap by 14 nucleotides MPMX19_06181 and MPMX19_06182 are separated by 22 nucleotides MPMX19_06182 and MPMX19_06183 overlap by 4 nucleotides
MPMX19_06180: MPMX19_06180 - Sensor histidine kinase RegB, at 370,046 to 371,323
_06180
MPMX19_06181: MPMX19_06181 - Photosynthetic apparatus regulatory protein RegA, at 371,310 to 371,864
_06181
MPMX19_06182: MPMX19_06182 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 371,887 to 372,717
_06182
MPMX19_06183: MPMX19_06183 - Phosphoglucosamine mutase, at 372,714 to 374,087
_06183
Position (kb) 371
372 Strain fitness (log2 ratio) -1
0
1
2 at 370.310 kb on + strand, within MPMX19_06180 at 370.310 kb on + strand, within MPMX19_06180 at 370.349 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.478 kb on + strand, within MPMX19_06180 at 370.940 kb on + strand, within MPMX19_06180 at 371.888 kb on + strand at 372.694 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 370,310 + MPMX19_06180 0.21 +1.1 370,310 + MPMX19_06180 0.21 +0.2 370,349 + MPMX19_06180 0.24 -0.6 370,478 + MPMX19_06180 0.34 +0.9 370,478 + MPMX19_06180 0.34 +2.0 370,478 + MPMX19_06180 0.34 +0.4 370,478 + MPMX19_06180 0.34 +1.0 370,940 + MPMX19_06180 0.70 -0.8 371,888 + -0.5 372,694 - -0.8
Or see this region's nucleotide sequence