Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06047

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06046 and MPMX19_06047 are separated by 4 nucleotidesMPMX19_06047 and MPMX19_06048 are separated by 336 nucleotides MPMX19_06046: MPMX19_06046 - Sensor histidine kinase RcsC, at 203,756 to 207,691 _06046 MPMX19_06047: MPMX19_06047 - hypothetical protein, at 207,696 to 208,868 _06047 MPMX19_06048: MPMX19_06048 - hypothetical protein, at 209,205 to 211,841 _06048 Position (kb) 207 208 209Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 206.712 kb on + strand, within MPMX19_06046at 206.712 kb on + strand, within MPMX19_06046at 206.712 kb on + strand, within MPMX19_06046at 206.712 kb on + strand, within MPMX19_06046at 206.712 kb on + strand, within MPMX19_06046at 206.712 kb on + strand, within MPMX19_06046at 206.712 kb on + strand, within MPMX19_06046at 206.712 kb on + strand, within MPMX19_06046at 206.712 kb on + strand, within MPMX19_06046at 206.712 kb on + strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.713 kb on - strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.931 kb on + strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.932 kb on - strand, within MPMX19_06046at 206.988 kb on + strand, within MPMX19_06046at 206.988 kb on + strand, within MPMX19_06046at 206.988 kb on + strand, within MPMX19_06046at 206.988 kb on + strand, within MPMX19_06046at 206.989 kb on - strand, within MPMX19_06046at 206.989 kb on - strand, within MPMX19_06046at 206.989 kb on - strand, within MPMX19_06046at 206.989 kb on - strand, within MPMX19_06046at 206.989 kb on - strand, within MPMX19_06046at 206.989 kb on - strand, within MPMX19_06046at 206.989 kb on - strand, within MPMX19_06046at 206.989 kb on - strand, within MPMX19_06046at 206.989 kb on - strand, within MPMX19_06046at 207.171 kb on + strand, within MPMX19_06046at 207.171 kb on + strand, within MPMX19_06046at 207.172 kb on - strand, within MPMX19_06046at 207.172 kb on - strand, within MPMX19_06046at 207.172 kb on - strand, within MPMX19_06046at 207.172 kb on - strand, within MPMX19_06046at 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.516 kb on + strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.517 kb on - strandat 207.781 kb on + strandat 207.781 kb on + strandat 207.781 kb on + strandat 207.781 kb on + strandat 207.781 kb on + strandat 207.782 kb on - strandat 207.782 kb on - strandat 207.782 kb on - strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.787 kb on + strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 207.788 kb on - strandat 208.042 kb on + strand, within MPMX19_06047at 208.042 kb on + strand, within MPMX19_06047at 208.042 kb on + strand, within MPMX19_06047at 208.043 kb on - strand, within MPMX19_06047at 208.043 kb on - strand, within MPMX19_06047at 208.043 kb on - strand, within MPMX19_06047at 208.043 kb on - strand, within MPMX19_06047at 208.192 kb on + strand, within MPMX19_06047at 208.192 kb on + strand, within MPMX19_06047at 208.192 kb on + strand, within MPMX19_06047at 208.192 kb on + strand, within MPMX19_06047at 208.192 kb on + strand, within MPMX19_06047at 208.193 kb on - strand, within MPMX19_06047at 208.193 kb on - strand, within MPMX19_06047at 208.193 kb on - strand, within MPMX19_06047at 208.193 kb on - strand, within MPMX19_06047at 208.193 kb on - strand, within MPMX19_06047at 208.204 kb on + strand, within MPMX19_06047at 208.204 kb on + strand, within MPMX19_06047at 208.204 kb on + strand, within MPMX19_06047at 208.204 kb on + strand, within MPMX19_06047at 208.205 kb on - strand, within MPMX19_06047at 208.205 kb on - strand, within MPMX19_06047at 208.205 kb on - strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.213 kb on + strand, within MPMX19_06047at 208.214 kb on - strand, within MPMX19_06047at 208.214 kb on - strand, within MPMX19_06047at 208.214 kb on - strand, within MPMX19_06047at 208.214 kb on - strand, within MPMX19_06047at 208.342 kb on + strand, within MPMX19_06047at 208.342 kb on + strand, within MPMX19_06047at 208.343 kb on - strand, within MPMX19_06047at 208.343 kb on - strand, within MPMX19_06047at 208.905 kb on + strandat 208.906 kb on - strandat 208.906 kb on - strandat 208.906 kb on - strandat 208.906 kb on - strandat 208.964 kb on - strandat 209.012 kb on + strandat 209.012 kb on + strandat 209.012 kb on + strandat 209.013 kb on - strandat 209.013 kb on - strandat 209.048 kb on + strandat 209.048 kb on + strandat 209.048 kb on + strandat 209.048 kb on + strandat 209.048 kb on + strandat 209.049 kb on - strandat 209.049 kb on - strandat 209.049 kb on - strandat 209.049 kb on - strandat 209.049 kb on - strandat 209.049 kb on - strandat 209.074 kb on - strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.204 kb on + strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.205 kb on - strandat 209.512 kb on - strand, within MPMX19_06048at 209.512 kb on - strand, within MPMX19_06048at 209.512 kb on - strand, within MPMX19_06048at 209.512 kb on - strand, within MPMX19_06048at 209.512 kb on - strand, within MPMX19_06048at 209.512 kb on - strand, within MPMX19_06048at 209.718 kb on + strand, within MPMX19_06048at 209.718 kb on + strand, within MPMX19_06048at 209.718 kb on + strand, within MPMX19_06048at 209.718 kb on + strand, within MPMX19_06048at 209.719 kb on - strand, within MPMX19_06048at 209.719 kb on - strand, within MPMX19_06048at 209.719 kb on - strand, within MPMX19_06048at 209.719 kb on - strand, within MPMX19_06048at 209.719 kb on - strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.859 kb on + strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048at 209.860 kb on - strand, within MPMX19_06048

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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206,712 + MPMX19_06046 0.75 -0.2
206,712 + MPMX19_06046 0.75 -0.8
206,712 + MPMX19_06046 0.75 +1.3
206,712 + MPMX19_06046 0.75 -0.4
206,712 + MPMX19_06046 0.75 -0.2
206,712 + MPMX19_06046 0.75 -1.0
206,712 + MPMX19_06046 0.75 +0.2
206,712 + MPMX19_06046 0.75 -0.4
206,712 + MPMX19_06046 0.75 +1.0
206,712 + MPMX19_06046 0.75 +0.6
206,713 - MPMX19_06046 0.75 -1.2
206,713 - MPMX19_06046 0.75 -0.3
206,713 - MPMX19_06046 0.75 -0.9
206,713 - MPMX19_06046 0.75 -0.4
206,713 - MPMX19_06046 0.75 +1.6
206,713 - MPMX19_06046 0.75 -0.6
206,713 - MPMX19_06046 0.75 -0.4
206,713 - MPMX19_06046 0.75 -0.8
206,713 - MPMX19_06046 0.75 -0.4
206,713 - MPMX19_06046 0.75 +0.3
206,713 - MPMX19_06046 0.75 -1.9
206,713 - MPMX19_06046 0.75 -1.8
206,713 - MPMX19_06046 0.75 -1.4
206,713 - MPMX19_06046 0.75 -0.4
206,931 + MPMX19_06046 0.81 -1.4
206,931 + MPMX19_06046 0.81 -1.2
206,931 + MPMX19_06046 0.81 -0.6
206,931 + MPMX19_06046 0.81 +1.2
206,931 + MPMX19_06046 0.81 -1.2
206,931 + MPMX19_06046 0.81 +0.3
206,931 + MPMX19_06046 0.81 -2.8
206,931 + MPMX19_06046 0.81 -2.3
206,931 + MPMX19_06046 0.81 -0.8
206,931 + MPMX19_06046 0.81 +0.6
206,931 + MPMX19_06046 0.81 -1.6
206,931 + MPMX19_06046 0.81 -1.0
206,931 + MPMX19_06046 0.81 -0.0
206,931 + MPMX19_06046 0.81 +1.0
206,931 + MPMX19_06046 0.81 +0.4
206,931 + MPMX19_06046 0.81 +0.2
206,931 + MPMX19_06046 0.81 -0.4
206,931 + MPMX19_06046 0.81 -1.2
206,932 - MPMX19_06046 0.81 -0.6
206,932 - MPMX19_06046 0.81 -1.3
206,932 - MPMX19_06046 0.81 -0.0
206,932 - MPMX19_06046 0.81 -1.2
206,932 - MPMX19_06046 0.81 +0.6
206,932 - MPMX19_06046 0.81 +0.2
206,932 - MPMX19_06046 0.81 -0.8
206,932 - MPMX19_06046 0.81 +0.6
206,932 - MPMX19_06046 0.81 -1.9
206,932 - MPMX19_06046 0.81 +0.2
206,932 - MPMX19_06046 0.81 -1.2
206,932 - MPMX19_06046 0.81 -1.3
206,932 - MPMX19_06046 0.81 -1.7
206,932 - MPMX19_06046 0.81 -1.0
206,932 - MPMX19_06046 0.81 -2.6
206,932 - MPMX19_06046 0.81 -0.7
206,932 - MPMX19_06046 0.81 +0.6
206,932 - MPMX19_06046 0.81 -0.6
206,988 + MPMX19_06046 0.82 -0.0
206,988 + MPMX19_06046 0.82 +0.6
206,988 + MPMX19_06046 0.82 -0.8
206,988 + MPMX19_06046 0.82 -0.6
206,989 - MPMX19_06046 0.82 -1.4
206,989 - MPMX19_06046 0.82 -1.2
206,989 - MPMX19_06046 0.82 -0.2
206,989 - MPMX19_06046 0.82 -0.8
206,989 - MPMX19_06046 0.82 -0.0
206,989 - MPMX19_06046 0.82 +0.6
206,989 - MPMX19_06046 0.82 -0.8
206,989 - MPMX19_06046 0.82 -1.0
206,989 - MPMX19_06046 0.82 -1.4
207,171 + MPMX19_06046 0.87 +0.2
207,171 + MPMX19_06046 0.87 -1.1
207,172 - MPMX19_06046 0.87 -0.4
207,172 - MPMX19_06046 0.87 -1.4
207,172 - MPMX19_06046 0.87 -1.0
207,172 - MPMX19_06046 0.87 -0.8
207,516 + -0.4
207,516 + -0.8
207,516 + +2.0
207,516 + -0.2
207,516 + -1.8
207,516 + -0.2
207,516 + +0.6
207,516 + +0.8
207,516 + -3.0
207,516 + -2.5
207,516 + -0.4
207,516 + -0.3
207,516 + +0.2
207,516 + -0.8
207,516 + -0.7
207,516 + -2.6
207,516 + -1.6
207,516 + -0.7
207,517 - -2.3
207,517 - -0.3
207,517 - -0.8
207,517 - +0.8
207,517 - -0.4
207,517 - -0.6
207,517 - -0.2
207,517 - +1.6
207,517 - +0.3
207,517 - -0.2
207,517 - -0.8
207,517 - -1.0
207,517 - -1.0
207,517 - -0.4
207,517 - -0.0
207,517 - -1.0
207,781 + -1.0
207,781 + +1.6
207,781 + -0.8
207,781 + +0.8
207,781 + -1.9
207,782 - -1.2
207,782 - -0.7
207,782 - +1.0
207,787 + -0.8
207,787 + +1.0
207,787 + -0.4
207,787 + -2.1
207,787 + -0.8
207,787 + -1.3
207,787 + -0.9
207,787 + -0.2
207,787 + -0.0
207,787 + -1.0
207,787 + +0.8
207,788 - -1.2
207,788 - -0.8
207,788 - +0.6
207,788 - -0.4
207,788 - -1.9
207,788 - -0.6
207,788 - -0.8
207,788 - +0.6
207,788 - +1.2
207,788 - -0.4
207,788 - -2.5
207,788 - -0.2
207,788 - -1.7
207,788 - -1.2
207,788 - -1.4
207,788 - -1.1
207,788 - -1.9
207,788 - -0.8
207,788 - -2.0
207,788 - +0.9
208,042 + MPMX19_06047 0.29 -1.1
208,042 + MPMX19_06047 0.29 -0.4
208,042 + MPMX19_06047 0.29 -2.1
208,043 - MPMX19_06047 0.30 -0.6
208,043 - MPMX19_06047 0.30 -0.3
208,043 - MPMX19_06047 0.30 -1.0
208,043 - MPMX19_06047 0.30 -2.1
208,192 + MPMX19_06047 0.42 -0.8
208,192 + MPMX19_06047 0.42 -2.1
208,192 + MPMX19_06047 0.42 -1.6
208,192 + MPMX19_06047 0.42 -1.4
208,192 + MPMX19_06047 0.42 -0.8
208,193 - MPMX19_06047 0.42 -3.0
208,193 - MPMX19_06047 0.42 -1.2
208,193 - MPMX19_06047 0.42 -0.4
208,193 - MPMX19_06047 0.42 -0.8
208,193 - MPMX19_06047 0.42 -0.4
208,204 + MPMX19_06047 0.43 -0.2
208,204 + MPMX19_06047 0.43 -1.4
208,204 + MPMX19_06047 0.43 -1.2
208,204 + MPMX19_06047 0.43 +0.6
208,205 - MPMX19_06047 0.43 -1.0
208,205 - MPMX19_06047 0.43 -1.2
208,205 - MPMX19_06047 0.43 -0.0
208,213 + MPMX19_06047 0.44 -0.4
208,213 + MPMX19_06047 0.44 +0.1
208,213 + MPMX19_06047 0.44 +1.2
208,213 + MPMX19_06047 0.44 -1.6
208,213 + MPMX19_06047 0.44 -2.2
208,213 + MPMX19_06047 0.44 +0.7
208,213 + MPMX19_06047 0.44 -0.4
208,213 + MPMX19_06047 0.44 -1.2
208,214 - MPMX19_06047 0.44 -1.9
208,214 - MPMX19_06047 0.44 -1.4
208,214 - MPMX19_06047 0.44 +1.1
208,214 - MPMX19_06047 0.44 -1.8
208,342 + MPMX19_06047 0.55 -1.0
208,342 + MPMX19_06047 0.55 +1.2
208,343 - MPMX19_06047 0.55 -0.0
208,343 - MPMX19_06047 0.55 -1.2
208,905 + -2.8
208,906 - -0.2
208,906 - -0.8
208,906 - +0.6
208,906 - -0.2
208,964 - +2.1
209,012 + +0.3
209,012 + -1.6
209,012 + -1.0
209,013 - +1.6
209,013 - -1.1
209,048 + -0.8
209,048 + -1.6
209,048 + +0.9
209,048 + -0.0
209,048 + +0.3
209,049 - -1.2
209,049 - -0.0
209,049 - -0.4
209,049 - +0.6
209,049 - -0.0
209,049 - -2.0
209,074 - -1.3
209,204 + -2.0
209,204 + +0.2
209,204 + -0.5
209,204 + -1.6
209,204 + -1.5
209,204 + +0.8
209,204 + +0.8
209,204 + +2.2
209,204 + -0.6
209,205 - -0.0
209,205 - -1.8
209,205 - -2.8
209,205 - -2.0
209,205 - +1.2
209,205 - +1.2
209,205 - -2.1
209,205 - -1.2
209,205 - -0.4
209,205 - -1.6
209,205 - -0.8
209,512 - MPMX19_06048 0.12 -1.0
209,512 - MPMX19_06048 0.12 +0.2
209,512 - MPMX19_06048 0.12 -1.4
209,512 - MPMX19_06048 0.12 -0.8
209,512 - MPMX19_06048 0.12 +0.1
209,512 - MPMX19_06048 0.12 -1.0
209,718 + MPMX19_06048 0.19 +0.6
209,718 + MPMX19_06048 0.19 -2.4
209,718 + MPMX19_06048 0.19 -1.2
209,718 + MPMX19_06048 0.19 +1.0
209,719 - MPMX19_06048 0.19 +0.8
209,719 - MPMX19_06048 0.19 +0.2
209,719 - MPMX19_06048 0.19 -1.9
209,719 - MPMX19_06048 0.19 -0.0
209,719 - MPMX19_06048 0.19 +0.6
209,859 + MPMX19_06048 0.25 -1.3
209,859 + MPMX19_06048 0.25 -1.4
209,859 + MPMX19_06048 0.25 -0.4
209,859 + MPMX19_06048 0.25 -0.0
209,859 + MPMX19_06048 0.25 -0.0
209,859 + MPMX19_06048 0.25 -1.0
209,859 + MPMX19_06048 0.25 -0.0
209,859 + MPMX19_06048 0.25 -1.8
209,859 + MPMX19_06048 0.25 -0.8
209,859 + MPMX19_06048 0.25 -1.0
209,859 + MPMX19_06048 0.25 -0.9
209,859 + MPMX19_06048 0.25 +0.6
209,859 + MPMX19_06048 0.25 -1.0
209,859 + MPMX19_06048 0.25 -1.2
209,860 - MPMX19_06048 0.25 -0.0
209,860 - MPMX19_06048 0.25 -1.9
209,860 - MPMX19_06048 0.25 -0.4
209,860 - MPMX19_06048 0.25 -0.2
209,860 - MPMX19_06048 0.25 -1.3
209,860 - MPMX19_06048 0.25 -0.3
209,860 - MPMX19_06048 0.25 -0.9
209,860 - MPMX19_06048 0.25 -0.8
209,860 - MPMX19_06048 0.25 -0.8

Or see this region's nucleotide sequence