Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05799 and MPMX19_05800 are separated by 267 nucleotides MPMX19_05800 and MPMX19_05801 are separated by 632 nucleotides
MPMX19_05799: MPMX19_05799 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 521,786 to 522,841
_05799
MPMX19_05800: MPMX19_05800 - hypothetical protein, at 523,109 to 523,747
_05800
MPMX19_05801: MPMX19_05801 - Solute-binding protein, at 524,380 to 525,384
_05801
Position (kb) 523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.272 kb on + strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.273 kb on - strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.275 kb on + strand, within MPMX19_05799 at 522.276 kb on - strand, within MPMX19_05799 at 522.276 kb on - strand, within MPMX19_05799 at 522.276 kb on - strand, within MPMX19_05799 at 522.476 kb on + strand, within MPMX19_05799 at 522.521 kb on + strand, within MPMX19_05799 at 522.908 kb on - strand at 522.908 kb on - strand at 522.908 kb on - strand at 522.908 kb on - strand at 522.908 kb on - strand at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.655 kb on + strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.656 kb on - strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.679 kb on + strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.680 kb on - strand, within MPMX19_05800 at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.700 kb on + strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.701 kb on - strand at 523.761 kb on - strand at 523.778 kb on + strand at 523.778 kb on + strand at 523.778 kb on + strand at 523.778 kb on + strand at 523.779 kb on - strand at 523.779 kb on - strand at 523.779 kb on - strand at 523.779 kb on - strand at 523.800 kb on + strand at 523.800 kb on + strand at 523.800 kb on + strand at 523.800 kb on + strand at 523.861 kb on + strand at 523.861 kb on + strand at 523.861 kb on + strand at 524.025 kb on + strand at 524.124 kb on - strand at 524.267 kb on + strand at 524.267 kb on + strand at 524.267 kb on + strand at 524.267 kb on + strand at 524.267 kb on + strand at 524.267 kb on + strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.268 kb on - strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.379 kb on + strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.380 kb on - strand at 524.539 kb on + strand, within MPMX19_05801 at 524.540 kb on - strand, within MPMX19_05801 at 524.540 kb on - strand, within MPMX19_05801 at 524.540 kb on - strand, within MPMX19_05801 at 524.540 kb on - strand, within MPMX19_05801
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 522,272 + MPMX19_05799 0.46 +0.1 522,272 + MPMX19_05799 0.46 +0.1 522,272 + MPMX19_05799 0.46 -2.2 522,272 + MPMX19_05799 0.46 +0.5 522,272 + MPMX19_05799 0.46 -0.5 522,272 + MPMX19_05799 0.46 +1.5 522,272 + MPMX19_05799 0.46 -1.2 522,272 + MPMX19_05799 0.46 -2.1 522,272 + MPMX19_05799 0.46 -1.3 522,272 + MPMX19_05799 0.46 -1.2 522,273 - MPMX19_05799 0.46 -1.2 522,273 - MPMX19_05799 0.46 -0.7 522,273 - MPMX19_05799 0.46 -1.6 522,273 - MPMX19_05799 0.46 -0.5 522,273 - MPMX19_05799 0.46 -0.5 522,273 - MPMX19_05799 0.46 -0.5 522,273 - MPMX19_05799 0.46 +0.5 522,273 - MPMX19_05799 0.46 +1.5 522,273 - MPMX19_05799 0.46 +0.1 522,273 - MPMX19_05799 0.46 -1.5 522,273 - MPMX19_05799 0.46 +1.2 522,273 - MPMX19_05799 0.46 +0.3 522,273 - MPMX19_05799 0.46 +1.1 522,275 + MPMX19_05799 0.46 -3.3 522,275 + MPMX19_05799 0.46 -1.0 522,275 + MPMX19_05799 0.46 -0.9 522,275 + MPMX19_05799 0.46 -1.5 522,275 + MPMX19_05799 0.46 -0.9 522,275 + MPMX19_05799 0.46 +0.7 522,276 - MPMX19_05799 0.46 -0.9 522,276 - MPMX19_05799 0.46 -0.9 522,276 - MPMX19_05799 0.46 -1.7 522,476 + MPMX19_05799 0.65 +1.5 522,521 + MPMX19_05799 0.70 -0.2 522,908 - -0.5 522,908 - +0.1 522,908 - -0.8 522,908 - -0.1 522,908 - +0.6 523,655 + MPMX19_05800 0.85 +1.7 523,655 + MPMX19_05800 0.85 -0.5 523,655 + MPMX19_05800 0.85 -1.1 523,655 + MPMX19_05800 0.85 +0.1 523,655 + MPMX19_05800 0.85 +1.8 523,655 + MPMX19_05800 0.85 +0.9 523,655 + MPMX19_05800 0.85 -0.1 523,655 + MPMX19_05800 0.85 +1.5 523,655 + MPMX19_05800 0.85 +1.5 523,655 + MPMX19_05800 0.85 +2.5 523,656 - MPMX19_05800 0.86 -0.1 523,656 - MPMX19_05800 0.86 -0.1 523,656 - MPMX19_05800 0.86 -0.5 523,656 - MPMX19_05800 0.86 +0.2 523,656 - MPMX19_05800 0.86 +0.8 523,656 - MPMX19_05800 0.86 +0.8 523,656 - MPMX19_05800 0.86 +1.1 523,656 - MPMX19_05800 0.86 -0.5 523,656 - MPMX19_05800 0.86 -0.3 523,656 - MPMX19_05800 0.86 -0.5 523,679 + MPMX19_05800 0.89 +1.0 523,679 + MPMX19_05800 0.89 +0.9 523,679 + MPMX19_05800 0.89 +1.1 523,679 + MPMX19_05800 0.89 -0.4 523,679 + MPMX19_05800 0.89 +1.1 523,679 + MPMX19_05800 0.89 +3.3 523,679 + MPMX19_05800 0.89 -0.1 523,679 + MPMX19_05800 0.89 -0.1 523,679 + MPMX19_05800 0.89 +1.1 523,679 + MPMX19_05800 0.89 -1.2 523,679 + MPMX19_05800 0.89 -0.0 523,679 + MPMX19_05800 0.89 +0.1 523,679 + MPMX19_05800 0.89 +0.9 523,679 + MPMX19_05800 0.89 +1.8 523,679 + MPMX19_05800 0.89 +1.5 523,679 + MPMX19_05800 0.89 +0.7 523,679 + MPMX19_05800 0.89 -0.8 523,680 - MPMX19_05800 0.89 +0.3 523,680 - MPMX19_05800 0.89 +0.5 523,680 - MPMX19_05800 0.89 -0.3 523,680 - MPMX19_05800 0.89 +1.1 523,680 - MPMX19_05800 0.89 +1.1 523,680 - MPMX19_05800 0.89 -0.3 523,680 - MPMX19_05800 0.89 +0.9 523,680 - MPMX19_05800 0.89 -1.9 523,680 - MPMX19_05800 0.89 +0.2 523,680 - MPMX19_05800 0.89 +0.2 523,680 - MPMX19_05800 0.89 -0.4 523,680 - MPMX19_05800 0.89 -2.1 523,680 - MPMX19_05800 0.89 -0.0 523,700 + +1.5 523,700 + -0.3 523,700 + +0.7 523,700 + +0.4 523,700 + +1.1 523,700 + +0.3 523,700 + +0.5 523,700 + +0.4 523,700 + +0.9 523,701 - -0.0 523,701 - -0.3 523,701 - +0.1 523,701 - -0.1 523,701 - +1.9 523,701 - +1.7 523,701 - -0.9 523,761 - -0.0 523,778 + -0.9 523,778 + +0.1 523,778 + +0.1 523,778 + +0.6 523,779 - -1.5 523,779 - -0.3 523,779 - -1.3 523,779 - -0.1 523,800 + -0.5 523,800 + +0.1 523,800 + +0.1 523,800 + +0.9 523,861 + -0.9 523,861 + -0.8 523,861 + -1.1 524,025 + -1.1 524,124 - -0.5 524,267 + -1.8 524,267 + +0.4 524,267 + +0.1 524,267 + -0.9 524,267 + -0.9 524,267 + -2.6 524,268 - -1.1 524,268 - +0.2 524,268 - -0.7 524,268 - -1.2 524,268 - +1.5 524,268 - -0.2 524,268 - +0.5 524,268 - -1.1 524,268 - -0.5 524,268 - -0.5 524,268 - +0.5 524,268 - -1.1 524,268 - -2.3 524,379 + +1.1 524,379 + -0.5 524,379 + +0.1 524,379 + -0.3 524,379 + -1.4 524,379 + +0.2 524,379 + -0.9 524,379 + -1.9 524,379 + +0.1 524,379 + -0.6 524,379 + +2.5 524,379 + -0.3 524,379 + -0.2 524,379 + -1.1 524,380 - -1.1 524,380 - -1.3 524,380 - -1.4 524,380 - -0.5 524,380 - -1.3 524,380 - -1.9 524,380 - -1.1 524,380 - -0.9 524,380 - -2.0 524,380 - -0.1 524,380 - -0.5 524,380 - -1.1 524,380 - -0.6 524,539 + MPMX19_05801 0.16 +1.1 524,540 - MPMX19_05801 0.16 -0.8 524,540 - MPMX19_05801 0.16 -1.5 524,540 - MPMX19_05801 0.16 +2.1 524,540 - MPMX19_05801 0.16 -0.5
Or see this region's nucleotide sequence