Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05706 and MPMX19_05707 are separated by 134 nucleotides MPMX19_05707 and MPMX19_05708 are separated by 351 nucleotides
MPMX19_05706: MPMX19_05706 - hypothetical protein, at 423,331 to 425,361
_05706
MPMX19_05707: MPMX19_05707 - Homoserine/homoserine lactone efflux protein, at 425,496 to 426,131
_05707
MPMX19_05708: MPMX19_05708 - hypothetical protein, at 426,483 to 428,561
_05708
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 424.783 kb on + strand, within MPMX19_05706 at 424.783 kb on + strand, within MPMX19_05706 at 424.783 kb on + strand, within MPMX19_05706 at 424.783 kb on + strand, within MPMX19_05706 at 424.783 kb on + strand, within MPMX19_05706 at 424.783 kb on + strand, within MPMX19_05706 at 424.783 kb on + strand, within MPMX19_05706 at 424.784 kb on - strand, within MPMX19_05706 at 424.784 kb on - strand, within MPMX19_05706 at 424.784 kb on - strand, within MPMX19_05706 at 425.023 kb on + strand, within MPMX19_05706 at 425.023 kb on + strand, within MPMX19_05706 at 425.023 kb on + strand, within MPMX19_05706 at 425.023 kb on + strand, within MPMX19_05706 at 425.023 kb on + strand, within MPMX19_05706 at 425.023 kb on + strand, within MPMX19_05706 at 425.023 kb on + strand, within MPMX19_05706 at 425.023 kb on + strand, within MPMX19_05706 at 425.024 kb on - strand, within MPMX19_05706 at 425.024 kb on - strand, within MPMX19_05706 at 425.024 kb on - strand, within MPMX19_05706 at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.290 kb on + strand at 425.291 kb on - strand at 425.291 kb on - strand at 425.291 kb on - strand at 425.291 kb on - strand at 425.291 kb on - strand at 425.291 kb on - strand at 425.291 kb on - strand at 425.291 kb on - strand at 425.291 kb on - strand at 425.469 kb on + strand at 425.469 kb on + strand at 425.469 kb on + strand at 425.469 kb on + strand at 425.469 kb on + strand at 425.470 kb on - strand at 425.470 kb on - strand at 425.470 kb on - strand at 425.470 kb on - strand at 425.739 kb on + strand, within MPMX19_05707 at 425.739 kb on + strand, within MPMX19_05707 at 425.740 kb on - strand, within MPMX19_05707 at 425.740 kb on - strand, within MPMX19_05707 at 425.740 kb on - strand, within MPMX19_05707 at 425.740 kb on - strand, within MPMX19_05707 at 425.740 kb on - strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.003 kb on + strand, within MPMX19_05707 at 426.004 kb on - strand, within MPMX19_05707 at 426.004 kb on - strand, within MPMX19_05707 at 426.004 kb on - strand, within MPMX19_05707 at 426.004 kb on - strand, within MPMX19_05707 at 426.004 kb on - strand, within MPMX19_05707 at 426.004 kb on - strand, within MPMX19_05707 at 426.004 kb on - strand, within MPMX19_05707 at 426.004 kb on - strand, within MPMX19_05707 at 426.004 kb on - strand, within MPMX19_05707 at 426.004 kb on - strand, within MPMX19_05707 at 426.194 kb on + strand at 426.194 kb on + strand at 426.195 kb on - strand at 426.196 kb on + strand at 426.196 kb on + strand at 426.196 kb on + strand at 426.196 kb on + strand at 426.196 kb on + strand at 426.196 kb on + strand at 426.196 kb on + strand at 426.196 kb on + strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.197 kb on - strand at 426.201 kb on + strand at 426.202 kb on - strand at 426.238 kb on + strand at 426.238 kb on + strand at 426.238 kb on + strand at 426.239 kb on - strand at 426.239 kb on - strand at 426.239 kb on - strand at 426.239 kb on - strand at 426.239 kb on - strand at 426.239 kb on - strand at 426.263 kb on - strand at 426.265 kb on + strand at 426.266 kb on - strand at 426.300 kb on + strand at 426.301 kb on - strand at 426.306 kb on + strand at 426.316 kb on + strand at 426.317 kb on - strand at 426.317 kb on - strand at 426.332 kb on + strand at 426.332 kb on + strand at 426.332 kb on + strand at 426.332 kb on + strand at 426.333 kb on - strand at 426.333 kb on - strand at 426.397 kb on + strand at 426.397 kb on + strand at 426.397 kb on + strand at 426.397 kb on + strand at 426.398 kb on - strand at 426.398 kb on - strand at 426.398 kb on - strand at 426.398 kb on - strand at 426.398 kb on - strand at 426.398 kb on - strand at 426.398 kb on - strand at 426.431 kb on + strand at 426.432 kb on - strand at 426.470 kb on + strand at 426.470 kb on + strand at 426.470 kb on + strand at 426.470 kb on + strand at 426.470 kb on + strand at 426.471 kb on - strand at 426.471 kb on - strand at 426.471 kb on - strand at 426.471 kb on - strand at 426.471 kb on - strand at 426.471 kb on - strand at 426.471 kb on - strand at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.978 kb on + strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 426.979 kb on - strand, within MPMX19_05708 at 427.119 kb on + strand, within MPMX19_05708 at 427.119 kb on + strand, within MPMX19_05708 at 427.119 kb on + strand, within MPMX19_05708 at 427.120 kb on - strand, within MPMX19_05708
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 424,783 + MPMX19_05706 0.71 -1.3 424,783 + MPMX19_05706 0.71 +0.2 424,783 + MPMX19_05706 0.71 -0.1 424,783 + MPMX19_05706 0.71 -1.1 424,783 + MPMX19_05706 0.71 +1.5 424,783 + MPMX19_05706 0.71 -0.7 424,783 + MPMX19_05706 0.71 -0.8 424,784 - MPMX19_05706 0.72 +0.9 424,784 - MPMX19_05706 0.72 +1.5 424,784 - MPMX19_05706 0.72 +1.1 425,023 + MPMX19_05706 0.83 -1.1 425,023 + MPMX19_05706 0.83 -0.1 425,023 + MPMX19_05706 0.83 -0.5 425,023 + MPMX19_05706 0.83 -1.1 425,023 + MPMX19_05706 0.83 -0.7 425,023 + MPMX19_05706 0.83 -0.5 425,023 + MPMX19_05706 0.83 -0.5 425,023 + MPMX19_05706 0.83 -0.8 425,024 - MPMX19_05706 0.83 -1.0 425,024 - MPMX19_05706 0.83 +0.2 425,024 - MPMX19_05706 0.83 +0.9 425,290 + -1.8 425,290 + -0.3 425,290 + -1.1 425,290 + +0.1 425,290 + -0.8 425,290 + +0.5 425,290 + -0.8 425,290 + -1.4 425,290 + +0.9 425,290 + -0.3 425,290 + -1.5 425,290 + -1.0 425,290 + +1.1 425,290 + -1.7 425,291 - -0.1 425,291 - -0.5 425,291 - -0.7 425,291 - -0.5 425,291 - -1.3 425,291 - +0.2 425,291 - -1.7 425,291 - -0.3 425,291 - -1.1 425,469 + +0.6 425,469 + -0.4 425,469 + -0.5 425,469 + +1.1 425,469 + -2.4 425,470 - -0.7 425,470 - +0.5 425,470 - -1.5 425,470 - -1.0 425,739 + MPMX19_05707 0.38 -1.0 425,739 + MPMX19_05707 0.38 -1.4 425,740 - MPMX19_05707 0.38 -0.5 425,740 - MPMX19_05707 0.38 +1.5 425,740 - MPMX19_05707 0.38 -0.8 425,740 - MPMX19_05707 0.38 -0.8 425,740 - MPMX19_05707 0.38 -0.8 426,003 + MPMX19_05707 0.80 -0.1 426,003 + MPMX19_05707 0.80 -1.1 426,003 + MPMX19_05707 0.80 -0.5 426,003 + MPMX19_05707 0.80 -0.1 426,003 + MPMX19_05707 0.80 -0.8 426,003 + MPMX19_05707 0.80 -0.5 426,003 + MPMX19_05707 0.80 -0.5 426,003 + MPMX19_05707 0.80 -0.4 426,003 + MPMX19_05707 0.80 -0.6 426,003 + MPMX19_05707 0.80 -1.7 426,003 + MPMX19_05707 0.80 -1.1 426,003 + MPMX19_05707 0.80 -0.3 426,003 + MPMX19_05707 0.80 +0.2 426,003 + MPMX19_05707 0.80 -0.8 426,004 - MPMX19_05707 0.80 -0.1 426,004 - MPMX19_05707 0.80 -0.1 426,004 - MPMX19_05707 0.80 -0.8 426,004 - MPMX19_05707 0.80 +0.5 426,004 - MPMX19_05707 0.80 -2.9 426,004 - MPMX19_05707 0.80 -0.5 426,004 - MPMX19_05707 0.80 -1.7 426,004 - MPMX19_05707 0.80 -1.5 426,004 - MPMX19_05707 0.80 -1.3 426,004 - MPMX19_05707 0.80 -2.1 426,194 + -0.3 426,194 + -1.3 426,195 - -0.8 426,196 + -1.5 426,196 + -2.3 426,196 + -1.2 426,196 + -1.7 426,196 + +0.5 426,196 + +0.5 426,196 + -1.5 426,196 + -0.5 426,197 - -1.8 426,197 - -2.2 426,197 - -0.1 426,197 - +1.5 426,197 - -1.3 426,197 - -0.8 426,197 - -1.1 426,197 - -0.6 426,197 - -1.5 426,197 - +0.5 426,197 - -0.8 426,197 - -0.8 426,201 + -1.7 426,202 - -0.8 426,238 + -2.4 426,238 + -1.3 426,238 + -0.8 426,239 - +1.1 426,239 - -0.5 426,239 - -0.1 426,239 - -1.1 426,239 - +1.1 426,239 - -0.6 426,263 - -0.8 426,265 + -0.6 426,266 - -0.1 426,300 + -0.5 426,301 - -0.1 426,306 + +1.1 426,316 + -1.5 426,317 - -0.3 426,317 - +0.1 426,332 + -1.6 426,332 + -0.7 426,332 + +0.2 426,332 + +0.3 426,333 - -2.6 426,333 - -0.7 426,397 + -1.5 426,397 + -2.1 426,397 + -0.1 426,397 + -0.1 426,398 - +1.1 426,398 - -2.2 426,398 - +0.5 426,398 - +0.5 426,398 - +1.7 426,398 - -0.1 426,398 - +0.5 426,431 + +1.5 426,432 - +0.2 426,470 + -1.1 426,470 + -0.5 426,470 + -1.1 426,470 + -0.5 426,470 + -1.1 426,471 - -0.5 426,471 - -0.8 426,471 - -0.1 426,471 - -1.5 426,471 - +1.7 426,471 - -0.1 426,471 - +1.5 426,978 + MPMX19_05708 0.24 -0.3 426,978 + MPMX19_05708 0.24 +0.9 426,978 + MPMX19_05708 0.24 +0.3 426,978 + MPMX19_05708 0.24 -0.5 426,978 + MPMX19_05708 0.24 -1.1 426,978 + MPMX19_05708 0.24 +0.1 426,978 + MPMX19_05708 0.24 -1.4 426,978 + MPMX19_05708 0.24 +0.6 426,978 + MPMX19_05708 0.24 -0.1 426,978 + MPMX19_05708 0.24 -0.5 426,978 + MPMX19_05708 0.24 +0.5 426,978 + MPMX19_05708 0.24 -0.0 426,978 + MPMX19_05708 0.24 -0.1 426,978 + MPMX19_05708 0.24 -0.5 426,978 + MPMX19_05708 0.24 -2.0 426,978 + MPMX19_05708 0.24 -1.7 426,978 + MPMX19_05708 0.24 +0.5 426,978 + MPMX19_05708 0.24 -1.1 426,978 + MPMX19_05708 0.24 -0.8 426,978 + MPMX19_05708 0.24 +0.5 426,978 + MPMX19_05708 0.24 -0.1 426,978 + MPMX19_05708 0.24 -1.8 426,978 + MPMX19_05708 0.24 -1.7 426,978 + MPMX19_05708 0.24 +0.5 426,979 - MPMX19_05708 0.24 -0.5 426,979 - MPMX19_05708 0.24 -0.1 426,979 - MPMX19_05708 0.24 +0.9 426,979 - MPMX19_05708 0.24 -0.2 426,979 - MPMX19_05708 0.24 -1.5 426,979 - MPMX19_05708 0.24 -0.5 426,979 - MPMX19_05708 0.24 +1.5 426,979 - MPMX19_05708 0.24 -2.8 426,979 - MPMX19_05708 0.24 -1.3 426,979 - MPMX19_05708 0.24 -0.1 426,979 - MPMX19_05708 0.24 +0.9 426,979 - MPMX19_05708 0.24 -0.1 426,979 - MPMX19_05708 0.24 +0.3 426,979 - MPMX19_05708 0.24 -0.3 426,979 - MPMX19_05708 0.24 +1.5 426,979 - MPMX19_05708 0.24 -1.1 426,979 - MPMX19_05708 0.24 -1.0 426,979 - MPMX19_05708 0.24 -1.3 426,979 - MPMX19_05708 0.24 +0.5 426,979 - MPMX19_05708 0.24 -1.8 427,119 + MPMX19_05708 0.31 -0.5 427,119 + MPMX19_05708 0.31 +0.2 427,119 + MPMX19_05708 0.31 -1.5 427,120 - MPMX19_05708 0.31 -0.5
Or see this region's nucleotide sequence