Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05513

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05512 and MPMX19_05513 are separated by 115 nucleotidesMPMX19_05513 and MPMX19_05514 are separated by 137 nucleotides MPMX19_05512: MPMX19_05512 - Homoserine/homoserine lactone efflux protein, at 217,266 to 217,892 _05512 MPMX19_05513: MPMX19_05513 - 3'3'-cGAMP-specific phosphodiesterase 2, at 218,008 to 219,573 _05513 MPMX19_05514: MPMX19_05514 - 4-hydroxy-tetrahydrodipicolinate reductase, at 219,711 to 220,508 _05514 Position (kb) 218 219 220Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.062 kb on + strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.063 kb on - strandat 217.077 kb on + strandat 217.243 kb on + strandat 217.244 kb on - strandat 217.244 kb on - strandat 217.249 kb on + strandat 217.249 kb on + strandat 217.249 kb on + strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.250 kb on - strandat 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.353 kb on + strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.354 kb on - strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.509 kb on + strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.510 kb on - strand, within MPMX19_05512at 217.518 kb on + strand, within MPMX19_05512at 217.518 kb on + strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.519 kb on - strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.614 kb on + strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.615 kb on - strand, within MPMX19_05512at 217.761 kb on + strand, within MPMX19_05512at 217.762 kb on - strand, within MPMX19_05512at 217.762 kb on - strand, within MPMX19_05512at 217.762 kb on - strand, within MPMX19_05512at 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.914 kb on + strandat 217.915 kb on - strandat 217.915 kb on - strandat 217.915 kb on - strandat 217.915 kb on - strandat 217.915 kb on - strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.916 kb on + strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 217.917 kb on - strandat 218.236 kb on + strand, within MPMX19_05513at 218.236 kb on + strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.237 kb on - strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.452 kb on + strand, within MPMX19_05513at 218.453 kb on - strand, within MPMX19_05513at 218.453 kb on - strand, within MPMX19_05513at 218.453 kb on - strand, within MPMX19_05513at 218.488 kb on + strand, within MPMX19_05513at 218.488 kb on + strand, within MPMX19_05513at 218.488 kb on + strand, within MPMX19_05513at 218.489 kb on - strand, within MPMX19_05513at 218.489 kb on - strand, within MPMX19_05513at 218.489 kb on - strand, within MPMX19_05513at 218.518 kb on + strand, within MPMX19_05513at 218.518 kb on + strand, within MPMX19_05513at 218.518 kb on + strand, within MPMX19_05513at 218.518 kb on + strand, within MPMX19_05513at 218.519 kb on - strand, within MPMX19_05513at 218.519 kb on - strand, within MPMX19_05513at 218.947 kb on + strand, within MPMX19_05513at 218.947 kb on + strand, within MPMX19_05513at 218.947 kb on + strand, within MPMX19_05513at 218.948 kb on - strand, within MPMX19_05513at 218.948 kb on - strand, within MPMX19_05513at 219.007 kb on + strand, within MPMX19_05513at 219.008 kb on - strand, within MPMX19_05513at 219.008 kb on - strand, within MPMX19_05513at 219.008 kb on - strand, within MPMX19_05513at 219.008 kb on - strand, within MPMX19_05513at 219.008 kb on - strand, within MPMX19_05513at 219.295 kb on + strand, within MPMX19_05513at 219.295 kb on + strand, within MPMX19_05513at 219.295 kb on + strand, within MPMX19_05513at 219.295 kb on + strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.296 kb on - strand, within MPMX19_05513at 219.448 kb on + strandat 219.448 kb on + strandat 219.448 kb on + strandat 219.448 kb on + strandat 219.448 kb on + strandat 219.448 kb on + strandat 219.449 kb on - strandat 219.449 kb on - strandat 219.449 kb on - strandat 219.449 kb on - strandat 219.449 kb on - strandat 219.449 kb on - strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.571 kb on + strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.572 kb on - strandat 219.596 kb on + strandat 219.596 kb on + strandat 219.597 kb on - strandat 219.613 kb on + strandat 219.613 kb on + strandat 219.614 kb on - strandat 219.614 kb on - strandat 219.614 kb on - strandat 219.696 kb on + strandat 219.696 kb on + strandat 219.696 kb on + strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strandat 220.568 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
217,062 + -1.0
217,062 + -1.8
217,062 + -0.9
217,062 + -0.2
217,062 + -1.4
217,062 + -1.7
217,063 - -1.2
217,063 - -1.6
217,063 - -0.4
217,063 - -1.5
217,063 - +0.8
217,077 + +0.7
217,243 + -1.3
217,244 - -0.3
217,244 - -0.6
217,249 + -0.2
217,249 + +0.7
217,249 + +2.2
217,250 - +0.2
217,250 - -1.2
217,250 - -1.7
217,250 - +0.4
217,250 - -1.1
217,353 + MPMX19_05512 0.14 +0.7
217,353 + MPMX19_05512 0.14 -0.6
217,353 + MPMX19_05512 0.14 -0.0
217,353 + MPMX19_05512 0.14 +0.1
217,353 + MPMX19_05512 0.14 -0.9
217,353 + MPMX19_05512 0.14 -1.9
217,353 + MPMX19_05512 0.14 +0.4
217,353 + MPMX19_05512 0.14 -0.7
217,353 + MPMX19_05512 0.14 -1.5
217,353 + MPMX19_05512 0.14 -0.2
217,353 + MPMX19_05512 0.14 +0.0
217,353 + MPMX19_05512 0.14 -1.4
217,353 + MPMX19_05512 0.14 -0.9
217,353 + MPMX19_05512 0.14 -0.0
217,354 - MPMX19_05512 0.14 +0.7
217,354 - MPMX19_05512 0.14 -0.9
217,354 - MPMX19_05512 0.14 +1.4
217,354 - MPMX19_05512 0.14 -1.9
217,354 - MPMX19_05512 0.14 -0.4
217,354 - MPMX19_05512 0.14 -0.6
217,354 - MPMX19_05512 0.14 -0.8
217,354 - MPMX19_05512 0.14 -1.2
217,354 - MPMX19_05512 0.14 -2.7
217,354 - MPMX19_05512 0.14 -0.1
217,354 - MPMX19_05512 0.14 +2.4
217,354 - MPMX19_05512 0.14 -0.6
217,354 - MPMX19_05512 0.14 -0.2
217,354 - MPMX19_05512 0.14 -0.9
217,354 - MPMX19_05512 0.14 -0.2
217,509 + MPMX19_05512 0.39 -1.2
217,509 + MPMX19_05512 0.39 -0.9
217,509 + MPMX19_05512 0.39 +0.8
217,509 + MPMX19_05512 0.39 +0.4
217,510 - MPMX19_05512 0.39 +0.2
217,510 - MPMX19_05512 0.39 +1.4
217,510 - MPMX19_05512 0.39 -2.9
217,510 - MPMX19_05512 0.39 -1.9
217,510 - MPMX19_05512 0.39 -1.2
217,518 + MPMX19_05512 0.40 +0.2
217,518 + MPMX19_05512 0.40 -1.6
217,519 - MPMX19_05512 0.40 -1.2
217,519 - MPMX19_05512 0.40 -0.7
217,519 - MPMX19_05512 0.40 +0.4
217,519 - MPMX19_05512 0.40 -0.9
217,519 - MPMX19_05512 0.40 -0.3
217,519 - MPMX19_05512 0.40 -1.6
217,614 + MPMX19_05512 0.56 -0.6
217,614 + MPMX19_05512 0.56 -0.8
217,614 + MPMX19_05512 0.56 -0.9
217,614 + MPMX19_05512 0.56 -1.2
217,614 + MPMX19_05512 0.56 +0.6
217,614 + MPMX19_05512 0.56 -0.6
217,614 + MPMX19_05512 0.56 -0.7
217,614 + MPMX19_05512 0.56 -1.9
217,614 + MPMX19_05512 0.56 -0.1
217,614 + MPMX19_05512 0.56 -0.6
217,614 + MPMX19_05512 0.56 +0.0
217,614 + MPMX19_05512 0.56 -0.9
217,614 + MPMX19_05512 0.56 -1.6
217,614 + MPMX19_05512 0.56 -0.2
217,614 + MPMX19_05512 0.56 +1.1
217,615 - MPMX19_05512 0.56 -1.2
217,615 - MPMX19_05512 0.56 -1.6
217,615 - MPMX19_05512 0.56 +0.1
217,615 - MPMX19_05512 0.56 -1.2
217,615 - MPMX19_05512 0.56 -1.7
217,615 - MPMX19_05512 0.56 +1.1
217,615 - MPMX19_05512 0.56 +0.4
217,615 - MPMX19_05512 0.56 -1.6
217,615 - MPMX19_05512 0.56 -1.4
217,615 - MPMX19_05512 0.56 +0.1
217,615 - MPMX19_05512 0.56 -0.9
217,615 - MPMX19_05512 0.56 -0.6
217,615 - MPMX19_05512 0.56 -1.8
217,761 + MPMX19_05512 0.79 +1.8
217,762 - MPMX19_05512 0.79 +0.4
217,762 - MPMX19_05512 0.79 -0.6
217,762 - MPMX19_05512 0.79 -0.6
217,914 + -0.6
217,914 + -0.8
217,914 + -0.2
217,914 + -0.9
217,914 + +0.3
217,914 + -0.7
217,914 + -0.8
217,914 + +1.1
217,914 + +0.1
217,914 + -0.5
217,914 + -0.9
217,914 + -2.0
217,914 + +0.7
217,915 - -0.6
217,915 - +1.4
217,915 - +0.3
217,915 - -0.9
217,915 - -1.7
217,916 + -1.2
217,916 + -1.3
217,916 + +0.4
217,916 + +1.8
217,916 + -0.2
217,916 + -0.9
217,916 + -0.4
217,917 - +1.8
217,917 - -0.7
217,917 - -1.0
217,917 - +0.4
217,917 - +0.4
217,917 - +0.8
217,917 - +0.8
217,917 - -0.2
217,917 - +0.7
217,917 - -0.7
217,917 - -1.2
217,917 - -0.6
217,917 - +0.4
218,236 + MPMX19_05513 0.15 -0.4
218,236 + MPMX19_05513 0.15 -0.6
218,237 - MPMX19_05513 0.15 -1.6
218,237 - MPMX19_05513 0.15 -0.6
218,237 - MPMX19_05513 0.15 +0.4
218,237 - MPMX19_05513 0.15 +0.2
218,237 - MPMX19_05513 0.15 -0.9
218,237 - MPMX19_05513 0.15 -0.2
218,237 - MPMX19_05513 0.15 -1.7
218,452 + MPMX19_05513 0.28 +0.8
218,452 + MPMX19_05513 0.28 -2.4
218,452 + MPMX19_05513 0.28 -0.9
218,452 + MPMX19_05513 0.28 -1.2
218,452 + MPMX19_05513 0.28 -0.0
218,452 + MPMX19_05513 0.28 +0.7
218,453 - MPMX19_05513 0.28 -0.9
218,453 - MPMX19_05513 0.28 +0.0
218,453 - MPMX19_05513 0.28 -0.9
218,488 + MPMX19_05513 0.31 -0.9
218,488 + MPMX19_05513 0.31 -0.9
218,488 + MPMX19_05513 0.31 -2.7
218,489 - MPMX19_05513 0.31 -0.3
218,489 - MPMX19_05513 0.31 -0.2
218,489 - MPMX19_05513 0.31 -0.6
218,518 + MPMX19_05513 0.33 -0.2
218,518 + MPMX19_05513 0.33 +0.6
218,518 + MPMX19_05513 0.33 -0.9
218,518 + MPMX19_05513 0.33 -1.2
218,519 - MPMX19_05513 0.33 -1.4
218,519 - MPMX19_05513 0.33 -1.7
218,947 + MPMX19_05513 0.60 +0.3
218,947 + MPMX19_05513 0.60 -0.6
218,947 + MPMX19_05513 0.60 -1.9
218,948 - MPMX19_05513 0.60 -1.6
218,948 - MPMX19_05513 0.60 -0.4
219,007 + MPMX19_05513 0.64 +0.8
219,008 - MPMX19_05513 0.64 -0.6
219,008 - MPMX19_05513 0.64 +0.7
219,008 - MPMX19_05513 0.64 -0.2
219,008 - MPMX19_05513 0.64 -0.6
219,008 - MPMX19_05513 0.64 -0.4
219,295 + MPMX19_05513 0.82 -1.4
219,295 + MPMX19_05513 0.82 -0.9
219,295 + MPMX19_05513 0.82 -0.5
219,295 + MPMX19_05513 0.82 -2.2
219,296 - MPMX19_05513 0.82 -1.6
219,296 - MPMX19_05513 0.82 -1.1
219,296 - MPMX19_05513 0.82 -1.4
219,296 - MPMX19_05513 0.82 -0.2
219,296 - MPMX19_05513 0.82 +0.3
219,296 - MPMX19_05513 0.82 +0.4
219,296 - MPMX19_05513 0.82 -0.9
219,296 - MPMX19_05513 0.82 -0.6
219,296 - MPMX19_05513 0.82 -0.9
219,448 + +1.1
219,448 + -1.2
219,448 + -1.2
219,448 + +0.4
219,448 + +0.1
219,448 + -0.2
219,449 - +1.4
219,449 - -1.6
219,449 - -0.9
219,449 - +1.4
219,449 - -1.6
219,449 - -1.5
219,571 + -0.2
219,571 + -1.7
219,571 + -1.6
219,571 + -0.6
219,571 + +1.4
219,571 + -0.6
219,571 + -1.4
219,571 + -1.1
219,571 + -0.9
219,571 + -0.7
219,571 + -1.2
219,572 - +0.7
219,572 - -0.9
219,572 - -1.0
219,572 - -1.2
219,572 - -0.2
219,572 - -2.2
219,572 - -1.9
219,572 - -2.0
219,596 + -2.2
219,596 + -1.7
219,597 - -0.2
219,613 + -1.6
219,613 + -0.9
219,614 - -1.6
219,614 - -0.9
219,614 - -0.2
219,696 + +0.6
219,696 + -2.6
219,696 + -1.3
220,568 - -0.2
220,568 - -0.7
220,568 - +0.0
220,568 - +0.4
220,568 - +1.4
220,568 - +0.1
220,568 - -0.6
220,568 - -0.9

Or see this region's nucleotide sequence