Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05458 and MPMX19_05459 are separated by 103 nucleotides MPMX19_05459 and MPMX19_05460 are separated by 275 nucleotides MPMX19_05460 and MPMX19_05461 are separated by 18 nucleotides
MPMX19_05458: MPMX19_05458 - hypothetical protein, at 145,358 to 146,107
_05458
MPMX19_05459: MPMX19_05459 - hypothetical protein, at 146,211 to 146,486
_05459
MPMX19_05460: MPMX19_05460 - hypothetical protein, at 146,762 to 149,620
_05460
MPMX19_05461: MPMX19_05461 - hypothetical protein, at 149,639 to 151,183
_05461
Position (kb) 146
147
148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 145.854 kb on - strand, within MPMX19_05458 at 145.854 kb on - strand, within MPMX19_05458 at 145.870 kb on + strand, within MPMX19_05458 at 145.870 kb on + strand, within MPMX19_05458 at 145.872 kb on + strand, within MPMX19_05458 at 145.872 kb on + strand, within MPMX19_05458 at 145.873 kb on - strand, within MPMX19_05458 at 145.873 kb on - strand, within MPMX19_05458 at 146.000 kb on + strand, within MPMX19_05458 at 146.000 kb on + strand, within MPMX19_05458 at 146.001 kb on - strand, within MPMX19_05458 at 146.001 kb on - strand, within MPMX19_05458 at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.048 kb on + strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.049 kb on - strand at 146.145 kb on - strand at 146.313 kb on - strand, within MPMX19_05459 at 146.313 kb on - strand, within MPMX19_05459 at 146.368 kb on + strand, within MPMX19_05459 at 146.369 kb on - strand, within MPMX19_05459 at 146.444 kb on + strand, within MPMX19_05459 at 146.445 kb on - strand, within MPMX19_05459 at 146.564 kb on + strand at 146.564 kb on + strand at 146.564 kb on + strand at 146.564 kb on + strand at 146.564 kb on + strand at 146.564 kb on + strand at 146.564 kb on + strand at 146.565 kb on - strand at 146.565 kb on - strand at 146.565 kb on - strand at 146.565 kb on - strand at 146.565 kb on - strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.566 kb on + strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.567 kb on - strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.665 kb on + strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.666 kb on - strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.670 kb on + strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.671 kb on - strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.885 kb on + strand at 146.886 kb on - strand at 146.886 kb on - strand at 146.886 kb on - strand at 146.886 kb on - strand at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.327 kb on + strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.328 kb on - strand, within MPMX19_05460 at 147.910 kb on - strand, within MPMX19_05460 at 148.020 kb on + strand, within MPMX19_05460 at 148.021 kb on - strand, within MPMX19_05460 at 148.021 kb on - strand, within MPMX19_05460 at 148.021 kb on - strand, within MPMX19_05460 at 148.021 kb on - strand, within MPMX19_05460 at 148.083 kb on + strand, within MPMX19_05460 at 148.083 kb on + strand, within MPMX19_05460 at 148.084 kb on - strand, within MPMX19_05460 at 148.084 kb on - strand, within MPMX19_05460 at 148.355 kb on - strand, within MPMX19_05460 at 148.355 kb on - strand, within MPMX19_05460 at 148.355 kb on - strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.473 kb on + strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.474 kb on - strand, within MPMX19_05460 at 148.675 kb on + strand, within MPMX19_05460 at 148.675 kb on + strand, within MPMX19_05460 at 148.675 kb on + strand, within MPMX19_05460 at 148.676 kb on - strand, within MPMX19_05460 at 148.676 kb on - strand, within MPMX19_05460 at 148.761 kb on + strand, within MPMX19_05460 at 148.762 kb on - strand, within MPMX19_05460 at 148.762 kb on - strand, within MPMX19_05460 at 148.762 kb on - strand, within MPMX19_05460 at 148.762 kb on - strand, within MPMX19_05460 at 148.762 kb on - strand, within MPMX19_05460 at 148.840 kb on + strand, within MPMX19_05460 at 148.840 kb on + strand, within MPMX19_05460 at 148.840 kb on + strand, within MPMX19_05460 at 148.840 kb on + strand, within MPMX19_05460 at 148.840 kb on + strand, within MPMX19_05460 at 148.841 kb on - strand, within MPMX19_05460 at 148.881 kb on + strand, within MPMX19_05460 at 149.068 kb on + strand, within MPMX19_05460 at 149.068 kb on + strand, within MPMX19_05460 at 149.068 kb on + strand, within MPMX19_05460 at 149.069 kb on - strand, within MPMX19_05460 at 149.205 kb on + strand, within MPMX19_05460 at 149.205 kb on + strand, within MPMX19_05460 at 149.206 kb on - strand, within MPMX19_05460 at 149.206 kb on - strand, within MPMX19_05460 at 149.206 kb on - strand, within MPMX19_05460 at 149.568 kb on + strand at 149.756 kb on - strand at 149.802 kb on + strand, within MPMX19_05461 at 150.016 kb on + strand, within MPMX19_05461 at 150.016 kb on + strand, within MPMX19_05461 at 150.016 kb on + strand, within MPMX19_05461 at 150.017 kb on - strand, within MPMX19_05461 at 150.017 kb on - strand, within MPMX19_05461 at 150.076 kb on + strand, within MPMX19_05461 at 150.076 kb on + strand, within MPMX19_05461 at 150.076 kb on + strand, within MPMX19_05461 at 150.076 kb on + strand, within MPMX19_05461 at 150.077 kb on - strand, within MPMX19_05461 at 150.077 kb on - strand, within MPMX19_05461 at 150.077 kb on - strand, within MPMX19_05461 at 150.077 kb on - strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.579 kb on + strand, within MPMX19_05461 at 150.580 kb on - strand, within MPMX19_05461 at 150.580 kb on - strand, within MPMX19_05461
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 145,854 - MPMX19_05458 0.66 -0.6 145,854 - MPMX19_05458 0.66 +0.5 145,870 + MPMX19_05458 0.68 +0.7 145,870 + MPMX19_05458 0.68 -1.2 145,872 + MPMX19_05458 0.69 -0.8 145,872 + MPMX19_05458 0.69 -0.3 145,873 - MPMX19_05458 0.69 +0.5 145,873 - MPMX19_05458 0.69 -1.4 146,000 + MPMX19_05458 0.86 -1.6 146,000 + MPMX19_05458 0.86 -0.6 146,001 - MPMX19_05458 0.86 -1.2 146,001 - MPMX19_05458 0.86 +0.8 146,048 + +0.7 146,048 + +0.1 146,048 + -1.4 146,048 + -0.2 146,048 + +0.4 146,048 + -0.6 146,048 + +1.9 146,048 + -0.8 146,048 + -0.5 146,048 + +1.2 146,048 + +1.1 146,048 + -1.1 146,049 - +1.4 146,049 - +1.1 146,049 - -0.0 146,049 - -0.6 146,049 - -0.2 146,049 - -1.9 146,049 - -2.5 146,049 - -0.2 146,049 - +0.8 146,049 - +0.1 146,145 - -0.9 146,313 - MPMX19_05459 0.37 -1.4 146,313 - MPMX19_05459 0.37 +0.4 146,368 + MPMX19_05459 0.57 -0.2 146,369 - MPMX19_05459 0.57 -1.9 146,444 + MPMX19_05459 0.84 -0.3 146,445 - MPMX19_05459 0.85 +0.7 146,564 + +0.8 146,564 + -1.6 146,564 + -0.2 146,564 + -0.1 146,564 + -1.3 146,564 + -2.1 146,564 + +0.1 146,565 - +0.4 146,565 - -0.6 146,565 - +0.8 146,565 - -1.3 146,565 - -0.6 146,566 + -0.2 146,566 + -0.1 146,566 + -0.7 146,566 + -1.1 146,566 + -1.8 146,566 + -0.6 146,566 + -2.1 146,566 + -0.9 146,567 - -2.9 146,567 - -0.3 146,567 - -0.1 146,567 - -0.0 146,567 - -0.5 146,567 - -1.4 146,567 - -1.2 146,567 - -1.2 146,567 - -0.9 146,567 - +0.5 146,665 + -0.4 146,665 + -1.6 146,665 + -1.4 146,665 + -0.4 146,665 + -0.5 146,665 + -1.2 146,665 + +0.4 146,665 + -1.2 146,665 + +0.4 146,665 + -0.8 146,665 + -1.8 146,665 + -0.1 146,665 + -1.6 146,665 + +0.3 146,665 + -0.2 146,665 + -1.2 146,665 + +1.4 146,665 + -0.6 146,666 - +0.1 146,666 - -1.6 146,666 - +0.1 146,666 - +1.0 146,666 - -0.3 146,666 - +1.1 146,666 - -0.6 146,666 - -0.4 146,666 - -1.2 146,666 - -0.6 146,666 - -1.9 146,666 - -0.2 146,666 - -0.8 146,666 - -0.0 146,670 + -1.3 146,670 + -0.9 146,670 + -1.2 146,670 + -1.2 146,670 + +0.3 146,670 + -0.9 146,670 + -1.6 146,670 + +0.7 146,670 + +0.2 146,671 - -0.8 146,671 - +2.0 146,671 - -1.6 146,671 - +0.4 146,671 - -0.2 146,671 - -2.5 146,671 - +0.2 146,671 - -1.8 146,671 - +0.8 146,671 - -0.6 146,671 - -0.5 146,671 - -0.7 146,671 - -0.8 146,671 - -1.8 146,671 - -1.8 146,671 - -1.6 146,671 - +0.1 146,671 - -0.6 146,696 + -1.4 146,696 + -0.2 146,696 + -0.2 146,696 + -0.9 146,696 + +0.7 146,696 + -1.7 146,696 + -1.9 146,696 + -0.5 146,696 + +0.8 146,696 + -0.2 146,696 + +0.6 146,696 + -1.1 146,696 + -1.4 146,696 + -1.6 146,696 + -0.1 146,696 + -1.6 146,697 - -1.0 146,697 - -1.6 146,697 - +0.1 146,697 - -2.2 146,697 - -1.8 146,697 - -0.3 146,697 - -1.6 146,697 - -1.4 146,885 + +1.4 146,885 + -0.2 146,885 + -0.2 146,885 + -0.9 146,885 + -0.6 146,885 + -1.9 146,885 + -1.1 146,886 - -0.0 146,886 - +0.4 146,886 - -2.4 146,886 - -0.6 147,327 + MPMX19_05460 0.20 -0.2 147,327 + MPMX19_05460 0.20 -0.2 147,327 + MPMX19_05460 0.20 -1.2 147,327 + MPMX19_05460 0.20 -0.9 147,327 + MPMX19_05460 0.20 -1.4 147,327 + MPMX19_05460 0.20 -1.9 147,327 + MPMX19_05460 0.20 -1.2 147,327 + MPMX19_05460 0.20 -1.2 147,328 - MPMX19_05460 0.20 -1.4 147,328 - MPMX19_05460 0.20 -0.0 147,328 - MPMX19_05460 0.20 -1.3 147,328 - MPMX19_05460 0.20 +0.4 147,328 - MPMX19_05460 0.20 -1.3 147,328 - MPMX19_05460 0.20 -0.2 147,328 - MPMX19_05460 0.20 -1.4 147,328 - MPMX19_05460 0.20 +0.4 147,328 - MPMX19_05460 0.20 -1.6 147,328 - MPMX19_05460 0.20 +0.4 147,910 - MPMX19_05460 0.40 -1.2 148,020 + MPMX19_05460 0.44 -0.9 148,021 - MPMX19_05460 0.44 -0.6 148,021 - MPMX19_05460 0.44 -1.5 148,021 - MPMX19_05460 0.44 -1.5 148,021 - MPMX19_05460 0.44 +0.1 148,083 + MPMX19_05460 0.46 -0.6 148,083 + MPMX19_05460 0.46 +1.4 148,084 - MPMX19_05460 0.46 -0.6 148,084 - MPMX19_05460 0.46 -2.4 148,355 - MPMX19_05460 0.56 +0.1 148,355 - MPMX19_05460 0.56 -0.6 148,355 - MPMX19_05460 0.56 -0.0 148,473 + MPMX19_05460 0.60 -1.9 148,473 + MPMX19_05460 0.60 +0.1 148,473 + MPMX19_05460 0.60 -2.6 148,473 + MPMX19_05460 0.60 -0.5 148,473 + MPMX19_05460 0.60 +2.0 148,473 + MPMX19_05460 0.60 -1.2 148,473 + MPMX19_05460 0.60 -0.9 148,473 + MPMX19_05460 0.60 -1.3 148,473 + MPMX19_05460 0.60 -0.9 148,473 + MPMX19_05460 0.60 -0.2 148,474 - MPMX19_05460 0.60 -0.2 148,474 - MPMX19_05460 0.60 -0.9 148,474 - MPMX19_05460 0.60 +0.0 148,474 - MPMX19_05460 0.60 +0.1 148,474 - MPMX19_05460 0.60 +0.4 148,474 - MPMX19_05460 0.60 -1.4 148,474 - MPMX19_05460 0.60 -2.1 148,474 - MPMX19_05460 0.60 -1.2 148,474 - MPMX19_05460 0.60 -0.7 148,474 - MPMX19_05460 0.60 +0.8 148,474 - MPMX19_05460 0.60 +2.4 148,474 - MPMX19_05460 0.60 -0.2 148,474 - MPMX19_05460 0.60 -0.2 148,474 - MPMX19_05460 0.60 -1.8 148,675 + MPMX19_05460 0.67 +0.4 148,675 + MPMX19_05460 0.67 -1.8 148,675 + MPMX19_05460 0.67 -0.1 148,676 - MPMX19_05460 0.67 -0.9 148,676 - MPMX19_05460 0.67 -0.9 148,761 + MPMX19_05460 0.70 +0.2 148,762 - MPMX19_05460 0.70 -1.6 148,762 - MPMX19_05460 0.70 +0.1 148,762 - MPMX19_05460 0.70 -1.5 148,762 - MPMX19_05460 0.70 -1.4 148,762 - MPMX19_05460 0.70 +1.0 148,840 + MPMX19_05460 0.73 -0.4 148,840 + MPMX19_05460 0.73 -0.9 148,840 + MPMX19_05460 0.73 -0.9 148,840 + MPMX19_05460 0.73 +0.4 148,840 + MPMX19_05460 0.73 -0.4 148,841 - MPMX19_05460 0.73 -0.6 148,881 + MPMX19_05460 0.74 -0.0 149,068 + MPMX19_05460 0.81 -1.6 149,068 + MPMX19_05460 0.81 -0.2 149,068 + MPMX19_05460 0.81 -0.9 149,069 - MPMX19_05460 0.81 -0.9 149,205 + MPMX19_05460 0.85 -0.2 149,205 + MPMX19_05460 0.85 +0.4 149,206 - MPMX19_05460 0.85 -0.9 149,206 - MPMX19_05460 0.85 -0.6 149,206 - MPMX19_05460 0.85 -1.2 149,568 + -1.5 149,756 - -1.6 149,802 + MPMX19_05461 0.11 +0.5 150,016 + MPMX19_05461 0.24 -0.9 150,016 + MPMX19_05461 0.24 -0.9 150,016 + MPMX19_05461 0.24 +0.2 150,017 - MPMX19_05461 0.24 +0.5 150,017 - MPMX19_05461 0.24 -3.0 150,076 + MPMX19_05461 0.28 -1.8 150,076 + MPMX19_05461 0.28 -0.2 150,076 + MPMX19_05461 0.28 -0.6 150,076 + MPMX19_05461 0.28 +1.8 150,077 - MPMX19_05461 0.28 +0.1 150,077 - MPMX19_05461 0.28 -2.7 150,077 - MPMX19_05461 0.28 -1.5 150,077 - MPMX19_05461 0.28 +0.4 150,579 + MPMX19_05461 0.61 -0.6 150,579 + MPMX19_05461 0.61 -0.2 150,579 + MPMX19_05461 0.61 -0.8 150,579 + MPMX19_05461 0.61 -2.1 150,579 + MPMX19_05461 0.61 -0.7 150,579 + MPMX19_05461 0.61 -0.2 150,579 + MPMX19_05461 0.61 -0.6 150,579 + MPMX19_05461 0.61 -0.6 150,580 - MPMX19_05461 0.61 -2.5 150,580 - MPMX19_05461 0.61 +0.4
Or see this region's nucleotide sequence