Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05372

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05370 and MPMX19_05371 are separated by 85 nucleotidesMPMX19_05371 and MPMX19_05372 are separated by 4 nucleotidesMPMX19_05372 and MPMX19_05373 are separated by 159 nucleotides MPMX19_05370: MPMX19_05370 - hypothetical protein, at 43,354 to 43,962 _05370 MPMX19_05371: MPMX19_05371 - hypothetical protein, at 44,048 to 44,941 _05371 MPMX19_05372: MPMX19_05372 - Cell division ATP-binding protein FtsE, at 44,946 to 45,683 _05372 MPMX19_05373: MPMX19_05373 - hypothetical protein, at 45,843 to 46,625 _05373 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 44.102 kb on + strandat 44.102 kb on + strandat 44.102 kb on + strandat 44.102 kb on + strandat 44.102 kb on + strandat 44.103 kb on - strandat 44.103 kb on - strandat 44.103 kb on - strandat 44.214 kb on + strand, within MPMX19_05371at 44.214 kb on + strand, within MPMX19_05371at 44.214 kb on + strand, within MPMX19_05371at 44.214 kb on + strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.215 kb on - strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.301 kb on + strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.302 kb on - strand, within MPMX19_05371at 44.947 kb on + strandat 44.948 kb on - strandat 44.948 kb on - strandat 44.948 kb on - strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.988 kb on + strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 44.989 kb on - strandat 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.133 kb on + strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.134 kb on - strand, within MPMX19_05372at 45.151 kb on + strand, within MPMX19_05372at 45.151 kb on + strand, within MPMX19_05372at 45.151 kb on + strand, within MPMX19_05372at 45.151 kb on + strand, within MPMX19_05372at 45.151 kb on + strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.152 kb on - strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.538 kb on + strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.539 kb on - strand, within MPMX19_05372at 45.652 kb on + strandat 45.653 kb on - strandat 45.804 kb on + strandat 45.805 kb on - strandat 45.805 kb on - strandat 46.635 kb on + strandat 46.656 kb on - strandat 46.677 kb on + strandat 46.677 kb on + strandat 46.677 kb on + strandat 46.677 kb on + strandat 46.677 kb on + strandat 46.677 kb on + strandat 46.678 kb on - strandat 46.678 kb on - strandat 46.678 kb on - strandat 46.678 kb on - strandat 46.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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44,102 + -1.2
44,102 + +2.4
44,102 + +2.4
44,102 + +0.1
44,102 + -0.9
44,103 - -0.2
44,103 - +0.2
44,103 - -1.5
44,214 + MPMX19_05371 0.19 -0.8
44,214 + MPMX19_05371 0.19 -1.9
44,214 + MPMX19_05371 0.19 -0.5
44,214 + MPMX19_05371 0.19 +0.9
44,215 - MPMX19_05371 0.19 -1.1
44,215 - MPMX19_05371 0.19 -1.1
44,215 - MPMX19_05371 0.19 +2.0
44,215 - MPMX19_05371 0.19 -0.2
44,215 - MPMX19_05371 0.19 -1.6
44,215 - MPMX19_05371 0.19 -1.2
44,215 - MPMX19_05371 0.19 -0.9
44,215 - MPMX19_05371 0.19 -2.1
44,215 - MPMX19_05371 0.19 -0.2
44,301 + MPMX19_05371 0.28 -0.2
44,301 + MPMX19_05371 0.28 -0.9
44,301 + MPMX19_05371 0.28 -0.2
44,301 + MPMX19_05371 0.28 -1.2
44,301 + MPMX19_05371 0.28 -1.4
44,301 + MPMX19_05371 0.28 -0.9
44,301 + MPMX19_05371 0.28 +0.7
44,301 + MPMX19_05371 0.28 +0.9
44,302 - MPMX19_05371 0.28 -0.6
44,302 - MPMX19_05371 0.28 +0.6
44,302 - MPMX19_05371 0.28 +0.2
44,302 - MPMX19_05371 0.28 +0.2
44,302 - MPMX19_05371 0.28 -1.2
44,302 - MPMX19_05371 0.28 -1.9
44,947 + -0.8
44,948 - +0.5
44,948 - -1.6
44,948 - -1.6
44,988 + +0.1
44,988 + -0.6
44,988 + -0.6
44,988 + +0.7
44,988 + -0.2
44,988 + -0.4
44,988 + -0.2
44,989 - -0.0
44,989 - -1.0
44,989 - -0.7
44,989 - -1.4
44,989 - -0.6
44,989 - +2.1
44,989 - -1.1
44,989 - -0.6
44,989 - +1.4
44,989 - -1.5
44,989 - +0.8
45,133 + MPMX19_05372 0.25 -1.2
45,133 + MPMX19_05372 0.25 +0.4
45,133 + MPMX19_05372 0.25 +0.4
45,133 + MPMX19_05372 0.25 -1.2
45,133 + MPMX19_05372 0.25 +0.8
45,133 + MPMX19_05372 0.25 +0.4
45,133 + MPMX19_05372 0.25 -0.2
45,133 + MPMX19_05372 0.25 -0.2
45,133 + MPMX19_05372 0.25 -0.6
45,133 + MPMX19_05372 0.25 -0.9
45,133 + MPMX19_05372 0.25 -0.6
45,133 + MPMX19_05372 0.25 -1.6
45,133 + MPMX19_05372 0.25 -0.6
45,133 + MPMX19_05372 0.25 +1.4
45,133 + MPMX19_05372 0.25 -0.9
45,134 - MPMX19_05372 0.25 +0.7
45,134 - MPMX19_05372 0.25 +0.2
45,134 - MPMX19_05372 0.25 -0.1
45,134 - MPMX19_05372 0.25 -0.9
45,134 - MPMX19_05372 0.25 +1.0
45,134 - MPMX19_05372 0.25 +0.4
45,134 - MPMX19_05372 0.25 -0.9
45,134 - MPMX19_05372 0.25 -0.5
45,134 - MPMX19_05372 0.25 +0.1
45,151 + MPMX19_05372 0.28 +1.4
45,151 + MPMX19_05372 0.28 +0.8
45,151 + MPMX19_05372 0.28 +1.4
45,151 + MPMX19_05372 0.28 -0.6
45,151 + MPMX19_05372 0.28 -0.6
45,152 - MPMX19_05372 0.28 -1.2
45,152 - MPMX19_05372 0.28 +0.4
45,152 - MPMX19_05372 0.28 -0.6
45,152 - MPMX19_05372 0.28 -0.9
45,152 - MPMX19_05372 0.28 +0.4
45,152 - MPMX19_05372 0.28 +0.1
45,152 - MPMX19_05372 0.28 -1.7
45,538 + MPMX19_05372 0.80 -0.2
45,538 + MPMX19_05372 0.80 -2.1
45,538 + MPMX19_05372 0.80 +2.0
45,538 + MPMX19_05372 0.80 +0.8
45,538 + MPMX19_05372 0.80 -0.6
45,538 + MPMX19_05372 0.80 +0.1
45,538 + MPMX19_05372 0.80 +0.4
45,538 + MPMX19_05372 0.80 -0.4
45,538 + MPMX19_05372 0.80 -0.9
45,538 + MPMX19_05372 0.80 +0.0
45,538 + MPMX19_05372 0.80 -0.2
45,539 - MPMX19_05372 0.80 +0.2
45,539 - MPMX19_05372 0.80 -1.8
45,539 - MPMX19_05372 0.80 -0.5
45,539 - MPMX19_05372 0.80 -1.2
45,539 - MPMX19_05372 0.80 -0.2
45,539 - MPMX19_05372 0.80 -0.1
45,539 - MPMX19_05372 0.80 -0.6
45,539 - MPMX19_05372 0.80 +0.4
45,539 - MPMX19_05372 0.80 +0.8
45,539 - MPMX19_05372 0.80 -1.4
45,539 - MPMX19_05372 0.80 -1.2
45,539 - MPMX19_05372 0.80 +1.0
45,539 - MPMX19_05372 0.80 +1.4
45,539 - MPMX19_05372 0.80 -0.6
45,539 - MPMX19_05372 0.80 -1.9
45,652 + -0.9
45,653 - +0.1
45,804 + -1.6
45,805 - -1.6
45,805 - +0.4
46,635 + -0.4
46,656 - -1.5
46,677 + -1.1
46,677 + -0.2
46,677 + -0.6
46,677 + -0.9
46,677 + -0.6
46,677 + +0.4
46,678 - -1.2
46,678 - -0.9
46,678 - -1.5
46,678 - -0.6
46,678 - +0.4

Or see this region's nucleotide sequence