Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05363

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05361 and MPMX19_05362 are separated by 107 nucleotidesMPMX19_05362 and MPMX19_05363 are separated by 209 nucleotidesMPMX19_05363 and MPMX19_05364 are separated by 6 nucleotidesMPMX19_05364 and MPMX19_05365 are separated by 17 nucleotides MPMX19_05361: MPMX19_05361 - CRP-like cAMP-activated global transcriptional regulator, at 36,962 to 37,672 _05361 MPMX19_05362: MPMX19_05362 - hypothetical protein, at 37,780 to 38,160 _05362 MPMX19_05363: MPMX19_05363 - D-beta-hydroxybutyrate dehydrogenase, at 38,370 to 39,158 _05363 MPMX19_05364: MPMX19_05364 - Acetate CoA-transferase subunit beta, at 39,165 to 39,818 _05364 MPMX19_05365: MPMX19_05365 - Acetate CoA-transferase subunit alpha, at 39,836 to 40,495 _05365 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 37.460 kb on + strand, within MPMX19_05361at 37.460 kb on + strand, within MPMX19_05361at 37.460 kb on + strand, within MPMX19_05361at 37.460 kb on + strand, within MPMX19_05361at 37.460 kb on + strand, within MPMX19_05361at 37.460 kb on + strand, within MPMX19_05361at 37.461 kb on - strand, within MPMX19_05361at 37.461 kb on - strand, within MPMX19_05361at 37.461 kb on - strand, within MPMX19_05361at 37.461 kb on - strand, within MPMX19_05361at 37.471 kb on + strand, within MPMX19_05361at 37.471 kb on + strand, within MPMX19_05361at 37.471 kb on + strand, within MPMX19_05361at 37.471 kb on + strand, within MPMX19_05361at 37.472 kb on - strand, within MPMX19_05361at 37.472 kb on - strand, within MPMX19_05361at 37.472 kb on - strand, within MPMX19_05361at 37.472 kb on - strand, within MPMX19_05361at 37.472 kb on - strand, within MPMX19_05361at 37.595 kb on + strand, within MPMX19_05361at 37.595 kb on + strand, within MPMX19_05361at 37.595 kb on + strand, within MPMX19_05361at 37.595 kb on + strand, within MPMX19_05361at 37.595 kb on + strand, within MPMX19_05361at 37.595 kb on + strand, within MPMX19_05361at 37.595 kb on + strand, within MPMX19_05361at 37.595 kb on + strand, within MPMX19_05361at 37.596 kb on - strand, within MPMX19_05361at 37.596 kb on - strand, within MPMX19_05361at 37.596 kb on - strand, within MPMX19_05361at 37.596 kb on - strand, within MPMX19_05361at 37.596 kb on - strand, within MPMX19_05361at 37.609 kb on + strandat 37.609 kb on + strandat 37.610 kb on - strandat 37.610 kb on - strandat 37.670 kb on + strandat 37.683 kb on + strandat 37.683 kb on + strandat 37.683 kb on + strandat 37.683 kb on + strandat 37.683 kb on + strandat 37.683 kb on + strandat 37.683 kb on + strandat 37.683 kb on + strandat 37.683 kb on + strandat 37.684 kb on - strandat 37.684 kb on - strandat 37.684 kb on - strandat 37.684 kb on - strandat 37.691 kb on + strandat 37.691 kb on + strandat 37.691 kb on + strandat 37.692 kb on - strandat 37.692 kb on - strandat 37.728 kb on + strandat 37.728 kb on + strandat 37.728 kb on + strandat 37.728 kb on + strandat 37.728 kb on + strandat 37.728 kb on + strandat 37.728 kb on + strandat 37.728 kb on + strandat 37.729 kb on - strandat 37.729 kb on - strandat 37.729 kb on - strandat 37.729 kb on - strandat 37.821 kb on + strand, within MPMX19_05362at 37.822 kb on - strand, within MPMX19_05362at 37.897 kb on + strand, within MPMX19_05362at 37.897 kb on + strand, within MPMX19_05362at 37.935 kb on + strand, within MPMX19_05362at 37.935 kb on + strand, within MPMX19_05362at 37.935 kb on + strand, within MPMX19_05362at 37.936 kb on - strand, within MPMX19_05362at 38.243 kb on - strandat 38.304 kb on + strandat 38.304 kb on + strandat 38.344 kb on + strandat 38.344 kb on + strandat 38.344 kb on + strandat 38.345 kb on - strandat 38.345 kb on - strandat 38.345 kb on - strandat 38.345 kb on - strandat 38.372 kb on - strandat 38.372 kb on - strandat 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.689 kb on + strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.690 kb on - strand, within MPMX19_05363at 38.789 kb on + strand, within MPMX19_05363at 38.789 kb on + strand, within MPMX19_05363at 38.911 kb on + strand, within MPMX19_05363at 38.911 kb on + strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 38.912 kb on - strand, within MPMX19_05363at 39.031 kb on + strand, within MPMX19_05363at 39.031 kb on + strand, within MPMX19_05363at 39.031 kb on + strand, within MPMX19_05363at 39.031 kb on + strand, within MPMX19_05363at 39.032 kb on - strand, within MPMX19_05363at 39.032 kb on - strand, within MPMX19_05363at 39.166 kb on + strandat 39.166 kb on + strandat 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.718 kb on + strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.719 kb on - strand, within MPMX19_05364at 39.827 kb on - strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.862 kb on - strandat 39.996 kb on + strand, within MPMX19_05365at 39.996 kb on + strand, within MPMX19_05365at 39.996 kb on + strand, within MPMX19_05365at 39.996 kb on + strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 39.997 kb on - strand, within MPMX19_05365at 40.011 kb on + strand, within MPMX19_05365at 40.012 kb on - strand, within MPMX19_05365at 40.012 kb on - strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.074 kb on + strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365at 40.075 kb on - strand, within MPMX19_05365

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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37,460 + MPMX19_05361 0.70 +3.0
37,460 + MPMX19_05361 0.70 +0.8
37,460 + MPMX19_05361 0.70 +2.1
37,460 + MPMX19_05361 0.70 +0.8
37,460 + MPMX19_05361 0.70 +3.9
37,460 + MPMX19_05361 0.70 +1.8
37,461 - MPMX19_05361 0.70 +2.8
37,461 - MPMX19_05361 0.70 +3.0
37,461 - MPMX19_05361 0.70 +1.0
37,461 - MPMX19_05361 0.70 +3.2
37,471 + MPMX19_05361 0.72 +2.4
37,471 + MPMX19_05361 0.72 +0.7
37,471 + MPMX19_05361 0.72 +1.8
37,471 + MPMX19_05361 0.72 +2.2
37,472 - MPMX19_05361 0.72 +3.2
37,472 - MPMX19_05361 0.72 +1.4
37,472 - MPMX19_05361 0.72 +1.8
37,472 - MPMX19_05361 0.72 +1.4
37,472 - MPMX19_05361 0.72 +1.6
37,595 + MPMX19_05361 0.89 +3.1
37,595 + MPMX19_05361 0.89 +1.7
37,595 + MPMX19_05361 0.89 +2.0
37,595 + MPMX19_05361 0.89 +2.4
37,595 + MPMX19_05361 0.89 +3.6
37,595 + MPMX19_05361 0.89 +2.1
37,595 + MPMX19_05361 0.89 +0.1
37,595 + MPMX19_05361 0.89 +2.0
37,596 - MPMX19_05361 0.89 +2.6
37,596 - MPMX19_05361 0.89 +0.6
37,596 - MPMX19_05361 0.89 +1.1
37,596 - MPMX19_05361 0.89 +1.2
37,596 - MPMX19_05361 0.89 +2.6
37,609 + +4.4
37,609 + +2.0
37,610 - +2.5
37,610 - +1.8
37,670 + -1.7
37,683 + -0.6
37,683 + +0.3
37,683 + +0.7
37,683 + -0.6
37,683 + -0.9
37,683 + -1.7
37,683 + -0.9
37,683 + -1.2
37,683 + -0.0
37,684 - -0.2
37,684 - -0.9
37,684 - -0.6
37,684 - +0.7
37,691 + +1.9
37,691 + -0.4
37,691 + -0.9
37,692 - -1.4
37,692 - -0.4
37,728 + +0.4
37,728 + +0.4
37,728 + +0.8
37,728 + -0.8
37,728 + +0.7
37,728 + -0.3
37,728 + -0.2
37,728 + +2.4
37,729 - +0.4
37,729 - -1.4
37,729 - +0.1
37,729 - -0.3
37,821 + MPMX19_05362 0.11 -0.9
37,822 - MPMX19_05362 0.11 +0.8
37,897 + MPMX19_05362 0.31 +0.1
37,897 + MPMX19_05362 0.31 -0.2
37,935 + MPMX19_05362 0.41 +1.1
37,935 + MPMX19_05362 0.41 -0.0
37,935 + MPMX19_05362 0.41 -1.5
37,936 - MPMX19_05362 0.41 -0.2
38,243 - -1.2
38,304 + +0.4
38,304 + -0.6
38,344 + +0.2
38,344 + -0.9
38,344 + +1.2
38,345 - +0.4
38,345 - +0.4
38,345 - -0.7
38,345 - +1.4
38,372 - -0.5
38,372 - +0.4
38,689 + MPMX19_05363 0.40 -1.9
38,689 + MPMX19_05363 0.40 -1.4
38,689 + MPMX19_05363 0.40 -1.2
38,689 + MPMX19_05363 0.40 +0.4
38,689 + MPMX19_05363 0.40 -0.2
38,689 + MPMX19_05363 0.40 -1.4
38,689 + MPMX19_05363 0.40 +0.6
38,689 + MPMX19_05363 0.40 +0.7
38,689 + MPMX19_05363 0.40 -1.6
38,689 + MPMX19_05363 0.40 +0.1
38,689 + MPMX19_05363 0.40 -1.9
38,689 + MPMX19_05363 0.40 +1.1
38,689 + MPMX19_05363 0.40 +0.8
38,690 - MPMX19_05363 0.41 -0.2
38,690 - MPMX19_05363 0.41 +3.0
38,690 - MPMX19_05363 0.41 +0.6
38,690 - MPMX19_05363 0.41 -1.0
38,690 - MPMX19_05363 0.41 +0.1
38,690 - MPMX19_05363 0.41 +0.2
38,690 - MPMX19_05363 0.41 +0.8
38,690 - MPMX19_05363 0.41 -0.6
38,690 - MPMX19_05363 0.41 +0.3
38,690 - MPMX19_05363 0.41 +0.4
38,690 - MPMX19_05363 0.41 +0.4
38,789 + MPMX19_05363 0.53 -2.4
38,789 + MPMX19_05363 0.53 -0.0
38,911 + MPMX19_05363 0.69 -0.2
38,911 + MPMX19_05363 0.69 +0.1
38,912 - MPMX19_05363 0.69 -0.1
38,912 - MPMX19_05363 0.69 -1.8
38,912 - MPMX19_05363 0.69 -0.4
38,912 - MPMX19_05363 0.69 +0.1
38,912 - MPMX19_05363 0.69 -0.9
38,912 - MPMX19_05363 0.69 -0.2
38,912 - MPMX19_05363 0.69 +1.4
38,912 - MPMX19_05363 0.69 +0.4
39,031 + MPMX19_05363 0.84 -0.9
39,031 + MPMX19_05363 0.84 +0.4
39,031 + MPMX19_05363 0.84 -2.4
39,031 + MPMX19_05363 0.84 +0.8
39,032 - MPMX19_05363 0.84 -0.2
39,032 - MPMX19_05363 0.84 -0.2
39,166 + -2.3
39,166 + -0.2
39,718 + MPMX19_05364 0.85 +0.4
39,718 + MPMX19_05364 0.85 +1.4
39,718 + MPMX19_05364 0.85 -0.2
39,718 + MPMX19_05364 0.85 +1.4
39,718 + MPMX19_05364 0.85 +0.4
39,718 + MPMX19_05364 0.85 -1.2
39,718 + MPMX19_05364 0.85 -1.0
39,718 + MPMX19_05364 0.85 +0.2
39,718 + MPMX19_05364 0.85 +1.5
39,718 + MPMX19_05364 0.85 -0.7
39,719 - MPMX19_05364 0.85 +0.2
39,719 - MPMX19_05364 0.85 -0.4
39,719 - MPMX19_05364 0.85 +1.4
39,719 - MPMX19_05364 0.85 +0.4
39,719 - MPMX19_05364 0.85 -0.2
39,719 - MPMX19_05364 0.85 +0.5
39,827 - +0.6
39,861 + +0.7
39,861 + -0.6
39,861 + -1.2
39,861 + -0.9
39,861 + +0.1
39,861 + -1.4
39,861 + +1.7
39,861 + -1.8
39,861 + -0.9
39,862 - +0.1
39,862 - -1.6
39,862 - -0.9
39,862 - +1.4
39,862 - +0.8
39,862 - -1.1
39,862 - -1.6
39,862 - -2.9
39,862 - -1.4
39,862 - +0.4
39,862 - -1.0
39,862 - +0.4
39,862 - -0.4
39,862 - +1.4
39,862 - -0.6
39,996 + MPMX19_05365 0.24 +1.2
39,996 + MPMX19_05365 0.24 +0.7
39,996 + MPMX19_05365 0.24 +0.3
39,996 + MPMX19_05365 0.24 -0.6
39,997 - MPMX19_05365 0.24 -0.2
39,997 - MPMX19_05365 0.24 +0.4
39,997 - MPMX19_05365 0.24 +1.4
39,997 - MPMX19_05365 0.24 +0.8
40,011 + MPMX19_05365 0.27 -0.9
40,012 - MPMX19_05365 0.27 -1.1
40,012 - MPMX19_05365 0.27 +1.4
40,074 + MPMX19_05365 0.36 -0.1
40,074 + MPMX19_05365 0.36 +0.1
40,074 + MPMX19_05365 0.36 -0.8
40,074 + MPMX19_05365 0.36 +1.4
40,074 + MPMX19_05365 0.36 -0.6
40,074 + MPMX19_05365 0.36 -0.6
40,074 + MPMX19_05365 0.36 -0.2
40,074 + MPMX19_05365 0.36 -0.4
40,074 + MPMX19_05365 0.36 +0.2
40,074 + MPMX19_05365 0.36 -0.2
40,074 + MPMX19_05365 0.36 +1.4
40,074 + MPMX19_05365 0.36 +2.6
40,075 - MPMX19_05365 0.36 +0.4
40,075 - MPMX19_05365 0.36 -1.8
40,075 - MPMX19_05365 0.36 -0.8
40,075 - MPMX19_05365 0.36 -0.1
40,075 - MPMX19_05365 0.36 -1.6
40,075 - MPMX19_05365 0.36 +2.0
40,075 - MPMX19_05365 0.36 -0.0
40,075 - MPMX19_05365 0.36 -0.9
40,075 - MPMX19_05365 0.36 -1.4
40,075 - MPMX19_05365 0.36 -1.2
40,075 - MPMX19_05365 0.36 -0.3

Or see this region's nucleotide sequence