Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05262

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05261 and MPMX19_05262 are separated by 90 nucleotidesMPMX19_05262 and MPMX19_05263 are separated by 6 nucleotides MPMX19_05261: MPMX19_05261 - Multidrug resistance protein MdtE, at 796,039 to 797,157 _05261 MPMX19_05262: MPMX19_05262 - hypothetical protein, at 797,248 to 797,880 _05262 MPMX19_05263: MPMX19_05263 - hypothetical protein, at 797,887 to 799,308 _05263 Position (kb) 797 798Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 796.622 kb on + strand, within MPMX19_05261at 796.622 kb on + strand, within MPMX19_05261at 796.622 kb on + strand, within MPMX19_05261at 796.622 kb on + strand, within MPMX19_05261at 796.622 kb on + strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.623 kb on - strand, within MPMX19_05261at 796.712 kb on + strand, within MPMX19_05261at 796.712 kb on + strand, within MPMX19_05261at 796.713 kb on - strand, within MPMX19_05261at 796.713 kb on - strand, within MPMX19_05261at 796.713 kb on - strand, within MPMX19_05261at 796.713 kb on - strand, within MPMX19_05261at 796.754 kb on + strand, within MPMX19_05261at 796.755 kb on - strand, within MPMX19_05261at 797.158 kb on - strandat 797.158 kb on - strandat 797.158 kb on - strandat 797.158 kb on - strandat 797.159 kb on - strandat 797.185 kb on + strandat 797.186 kb on - strandat 797.186 kb on - strandat 797.186 kb on - strandat 797.190 kb on + strandat 797.190 kb on + strandat 797.191 kb on - strandat 797.191 kb on - strandat 797.191 kb on - strandat 797.197 kb on - strandat 797.204 kb on + strandat 797.205 kb on - strandat 797.205 kb on - strandat 797.239 kb on + strandat 797.240 kb on - strandat 797.240 kb on - strandat 797.240 kb on - strandat 797.351 kb on - strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.410 kb on + strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.411 kb on - strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.440 kb on + strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.441 kb on - strand, within MPMX19_05262at 797.638 kb on + strand, within MPMX19_05262at 797.638 kb on + strand, within MPMX19_05262at 797.639 kb on - strand, within MPMX19_05262at 797.639 kb on - strand, within MPMX19_05262at 797.639 kb on - strand, within MPMX19_05262at 797.776 kb on + strand, within MPMX19_05262at 797.776 kb on + strand, within MPMX19_05262at 797.776 kb on + strand, within MPMX19_05262at 797.777 kb on - strand, within MPMX19_05262at 797.777 kb on - strand, within MPMX19_05262at 797.789 kb on + strand, within MPMX19_05262at 797.789 kb on + strand, within MPMX19_05262at 797.789 kb on + strand, within MPMX19_05262at 797.790 kb on - strand, within MPMX19_05262at 797.888 kb on + strandat 797.889 kb on - strandat 797.903 kb on + strandat 797.903 kb on + strandat 797.903 kb on + strandat 797.904 kb on - strandat 798.062 kb on + strand, within MPMX19_05263at 798.063 kb on - strand, within MPMX19_05263at 798.063 kb on - strand, within MPMX19_05263at 798.063 kb on - strand, within MPMX19_05263at 798.080 kb on + strand, within MPMX19_05263at 798.080 kb on + strand, within MPMX19_05263at 798.081 kb on - strand, within MPMX19_05263at 798.081 kb on - strand, within MPMX19_05263at 798.081 kb on - strand, within MPMX19_05263at 798.174 kb on - strand, within MPMX19_05263at 798.449 kb on + strand, within MPMX19_05263at 798.450 kb on - strand, within MPMX19_05263at 798.563 kb on + strand, within MPMX19_05263at 798.564 kb on - strand, within MPMX19_05263at 798.695 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.776 kb on + strand, within MPMX19_05263at 798.777 kb on - strand, within MPMX19_05263at 798.777 kb on - strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.857 kb on + strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263at 798.858 kb on - strand, within MPMX19_05263

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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796,622 + MPMX19_05261 0.52 -1.7
796,622 + MPMX19_05261 0.52 -0.3
796,622 + MPMX19_05261 0.52 +0.4
796,622 + MPMX19_05261 0.52 -1.3
796,622 + MPMX19_05261 0.52 +0.2
796,623 - MPMX19_05261 0.52 +1.0
796,623 - MPMX19_05261 0.52 +0.2
796,623 - MPMX19_05261 0.52 -0.8
796,623 - MPMX19_05261 0.52 -0.8
796,623 - MPMX19_05261 0.52 -0.2
796,623 - MPMX19_05261 0.52 +0.2
796,623 - MPMX19_05261 0.52 -0.8
796,712 + MPMX19_05261 0.60 +0.6
796,712 + MPMX19_05261 0.60 -1.7
796,713 - MPMX19_05261 0.60 +0.2
796,713 - MPMX19_05261 0.60 +0.0
796,713 - MPMX19_05261 0.60 +0.2
796,713 - MPMX19_05261 0.60 -1.2
796,754 + MPMX19_05261 0.64 -0.6
796,755 - MPMX19_05261 0.64 -0.3
797,158 - -0.3
797,158 - -0.8
797,158 - -0.6
797,158 - -0.7
797,159 - +0.2
797,185 + +0.4
797,186 - -1.3
797,186 - -1.4
797,186 - +0.7
797,190 + -0.1
797,190 + -1.6
797,191 - -1.2
797,191 - -1.6
797,191 - +0.7
797,197 - -1.3
797,204 + -0.7
797,205 - -1.6
797,205 - -1.8
797,239 + +1.3
797,240 - +1.7
797,240 - -0.3
797,240 - -0.8
797,351 - MPMX19_05262 0.16 +0.4
797,410 + MPMX19_05262 0.26 +1.7
797,410 + MPMX19_05262 0.26 +0.2
797,410 + MPMX19_05262 0.26 -2.0
797,410 + MPMX19_05262 0.26 -1.7
797,411 - MPMX19_05262 0.26 -1.7
797,411 - MPMX19_05262 0.26 -0.6
797,411 - MPMX19_05262 0.26 +0.3
797,411 - MPMX19_05262 0.26 +0.7
797,411 - MPMX19_05262 0.26 +0.2
797,411 - MPMX19_05262 0.26 -0.3
797,411 - MPMX19_05262 0.26 -0.1
797,440 + MPMX19_05262 0.30 -2.0
797,440 + MPMX19_05262 0.30 -1.6
797,440 + MPMX19_05262 0.30 -1.0
797,440 + MPMX19_05262 0.30 +0.4
797,440 + MPMX19_05262 0.30 +0.7
797,440 + MPMX19_05262 0.30 -0.3
797,440 + MPMX19_05262 0.30 +0.2
797,440 + MPMX19_05262 0.30 -3.5
797,440 + MPMX19_05262 0.30 +0.4
797,441 - MPMX19_05262 0.30 -1.1
797,441 - MPMX19_05262 0.30 +0.1
797,441 - MPMX19_05262 0.30 -2.4
797,441 - MPMX19_05262 0.30 -0.3
797,638 + MPMX19_05262 0.62 -0.8
797,638 + MPMX19_05262 0.62 +1.2
797,639 - MPMX19_05262 0.62 +0.7
797,639 - MPMX19_05262 0.62 -0.3
797,639 - MPMX19_05262 0.62 +1.7
797,776 + MPMX19_05262 0.83 -1.7
797,776 + MPMX19_05262 0.83 +0.7
797,776 + MPMX19_05262 0.83 -0.8
797,777 - MPMX19_05262 0.84 -1.1
797,777 - MPMX19_05262 0.84 +0.2
797,789 + MPMX19_05262 0.85 +1.7
797,789 + MPMX19_05262 0.85 -1.6
797,789 + MPMX19_05262 0.85 -0.3
797,790 - MPMX19_05262 0.86 -0.7
797,888 + +1.3
797,889 - +0.2
797,903 + +1.3
797,903 + -0.6
797,903 + -0.8
797,904 - -0.1
798,062 + MPMX19_05263 0.12 -1.6
798,063 - MPMX19_05263 0.12 -0.1
798,063 - MPMX19_05263 0.12 -0.6
798,063 - MPMX19_05263 0.12 -0.4
798,080 + MPMX19_05263 0.14 -0.3
798,080 + MPMX19_05263 0.14 -0.6
798,081 - MPMX19_05263 0.14 +0.2
798,081 - MPMX19_05263 0.14 -0.8
798,081 - MPMX19_05263 0.14 -0.4
798,174 - MPMX19_05263 0.20 -1.4
798,449 + MPMX19_05263 0.40 -0.7
798,450 - MPMX19_05263 0.40 -2.6
798,563 + MPMX19_05263 0.48 -1.3
798,564 - MPMX19_05263 0.48 +0.2
798,695 + MPMX19_05263 0.57 +0.5
798,776 + MPMX19_05263 0.63 +0.0
798,776 + MPMX19_05263 0.63 +0.7
798,776 + MPMX19_05263 0.63 -1.9
798,776 + MPMX19_05263 0.63 +1.0
798,777 - MPMX19_05263 0.63 -0.8
798,777 - MPMX19_05263 0.63 -0.3
798,857 + MPMX19_05263 0.68 -2.2
798,857 + MPMX19_05263 0.68 -1.6
798,857 + MPMX19_05263 0.68 -0.8
798,857 + MPMX19_05263 0.68 -0.3
798,857 + MPMX19_05263 0.68 +0.3
798,857 + MPMX19_05263 0.68 -0.9
798,857 + MPMX19_05263 0.68 +0.4
798,857 + MPMX19_05263 0.68 -1.3
798,858 - MPMX19_05263 0.68 -0.6
798,858 - MPMX19_05263 0.68 -2.0
798,858 - MPMX19_05263 0.68 +0.2
798,858 - MPMX19_05263 0.68 -1.8
798,858 - MPMX19_05263 0.68 +1.2
798,858 - MPMX19_05263 0.68 +1.2
798,858 - MPMX19_05263 0.68 +0.4
798,858 - MPMX19_05263 0.68 +0.5
798,858 - MPMX19_05263 0.68 -0.3
798,858 - MPMX19_05263 0.68 +2.3

Or see this region's nucleotide sequence