Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05151

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05150 and MPMX19_05151 are separated by 105 nucleotidesMPMX19_05151 and MPMX19_05152 are separated by 29 nucleotidesMPMX19_05152 and MPMX19_05153 are separated by 32 nucleotides MPMX19_05150: MPMX19_05150 - HTH-type transcriptional activator CmpR, at 647,154 to 648,140 _05150 MPMX19_05151: MPMX19_05151 - 2-aminoethylphosphonate--pyruvate transaminase, at 648,246 to 649,364 _05151 MPMX19_05152: MPMX19_05152 - Phosphonoacetaldehyde hydrolase, at 649,394 to 650,224 _05152 MPMX19_05153: MPMX19_05153 - 4-methylaminobutanoate oxidase (formaldehyde-forming), at 650,257 to 651,483 _05153 Position (kb) 648 649 650Strain fitness (log2 ratio) -2 -1 0 1 2 3at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.338 kb on + strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.339 kb on - strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.674 kb on + strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 647.675 kb on - strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.004 kb on + strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.005 kb on - strand, within MPMX19_05150at 648.143 kb on - strandat 648.143 kb on - strandat 648.152 kb on + strandat 648.152 kb on + strandat 648.152 kb on + strandat 648.153 kb on - strandat 648.172 kb on + strandat 648.172 kb on + strandat 648.177 kb on + strandat 648.264 kb on + strandat 648.264 kb on + strandat 648.265 kb on - strandat 648.265 kb on - strandat 648.519 kb on + strand, within MPMX19_05151at 648.519 kb on + strand, within MPMX19_05151at 648.520 kb on - strand, within MPMX19_05151at 648.520 kb on - strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.194 kb on + strand, within MPMX19_05151at 649.195 kb on - strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.227 kb on + strand, within MPMX19_05151at 649.228 kb on - strand, within MPMX19_05151at 649.406 kb on + strandat 649.407 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.419 kb on - strandat 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.673 kb on + strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.674 kb on - strand, within MPMX19_05152at 649.848 kb on - strand, within MPMX19_05152at 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.144 kb on + strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strandat 650.145 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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647,338 + MPMX19_05150 0.19 -0.3
647,338 + MPMX19_05150 0.19 -0.7
647,338 + MPMX19_05150 0.19 -0.2
647,338 + MPMX19_05150 0.19 -1.6
647,338 + MPMX19_05150 0.19 -0.6
647,338 + MPMX19_05150 0.19 -0.3
647,338 + MPMX19_05150 0.19 +0.1
647,338 + MPMX19_05150 0.19 +0.7
647,338 + MPMX19_05150 0.19 -0.6
647,338 + MPMX19_05150 0.19 +1.3
647,338 + MPMX19_05150 0.19 -1.6
647,338 + MPMX19_05150 0.19 +1.0
647,338 + MPMX19_05150 0.19 +0.1
647,339 - MPMX19_05150 0.19 -0.3
647,339 - MPMX19_05150 0.19 -0.6
647,339 - MPMX19_05150 0.19 -0.5
647,339 - MPMX19_05150 0.19 +1.7
647,339 - MPMX19_05150 0.19 +0.7
647,339 - MPMX19_05150 0.19 -0.6
647,339 - MPMX19_05150 0.19 +1.1
647,339 - MPMX19_05150 0.19 +0.4
647,339 - MPMX19_05150 0.19 -0.6
647,674 + MPMX19_05150 0.53 +1.5
647,674 + MPMX19_05150 0.53 -1.3
647,674 + MPMX19_05150 0.53 -2.3
647,674 + MPMX19_05150 0.53 -0.9
647,674 + MPMX19_05150 0.53 -1.3
647,674 + MPMX19_05150 0.53 -0.8
647,674 + MPMX19_05150 0.53 -0.3
647,674 + MPMX19_05150 0.53 -0.3
647,674 + MPMX19_05150 0.53 -0.3
647,674 + MPMX19_05150 0.53 -1.1
647,675 - MPMX19_05150 0.53 -2.2
647,675 - MPMX19_05150 0.53 +0.7
647,675 - MPMX19_05150 0.53 +0.7
647,675 - MPMX19_05150 0.53 +0.7
647,675 - MPMX19_05150 0.53 +0.1
647,675 - MPMX19_05150 0.53 -0.9
647,675 - MPMX19_05150 0.53 +0.1
647,675 - MPMX19_05150 0.53 +0.3
647,675 - MPMX19_05150 0.53 -0.1
647,675 - MPMX19_05150 0.53 -0.3
647,675 - MPMX19_05150 0.53 -0.3
648,004 + MPMX19_05150 0.86 -0.6
648,004 + MPMX19_05150 0.86 -0.1
648,004 + MPMX19_05150 0.86 +0.8
648,004 + MPMX19_05150 0.86 +0.1
648,004 + MPMX19_05150 0.86 +0.1
648,005 - MPMX19_05150 0.86 -1.0
648,005 - MPMX19_05150 0.86 +0.1
648,005 - MPMX19_05150 0.86 -0.3
648,005 - MPMX19_05150 0.86 +1.1
648,005 - MPMX19_05150 0.86 +3.7
648,005 - MPMX19_05150 0.86 -0.9
648,005 - MPMX19_05150 0.86 -0.7
648,005 - MPMX19_05150 0.86 -0.6
648,143 - -0.5
648,143 - +1.7
648,152 + +1.4
648,152 + +0.3
648,152 + -1.3
648,153 - +1.4
648,172 + +1.3
648,172 + -0.5
648,177 + -1.5
648,264 + -0.3
648,264 + -2.2
648,265 - -0.3
648,265 - -0.9
648,519 + MPMX19_05151 0.24 -0.6
648,519 + MPMX19_05151 0.24 -0.3
648,520 - MPMX19_05151 0.24 +1.7
648,520 - MPMX19_05151 0.24 -1.6
649,194 + MPMX19_05151 0.85 -2.7
649,194 + MPMX19_05151 0.85 -0.3
649,194 + MPMX19_05151 0.85 -0.6
649,194 + MPMX19_05151 0.85 -0.9
649,194 + MPMX19_05151 0.85 -0.6
649,195 - MPMX19_05151 0.85 -0.9
649,227 + MPMX19_05151 0.88 -1.1
649,227 + MPMX19_05151 0.88 -1.3
649,227 + MPMX19_05151 0.88 -1.6
649,227 + MPMX19_05151 0.88 +0.7
649,227 + MPMX19_05151 0.88 -1.7
649,227 + MPMX19_05151 0.88 +0.9
649,227 + MPMX19_05151 0.88 -0.5
649,228 - MPMX19_05151 0.88 -1.6
649,406 + -0.5
649,407 - +0.1
649,419 - -1.6
649,419 - -1.0
649,419 - +0.1
649,419 - -0.2
649,673 + MPMX19_05152 0.34 +0.1
649,673 + MPMX19_05152 0.34 +0.1
649,673 + MPMX19_05152 0.34 -0.7
649,673 + MPMX19_05152 0.34 +0.3
649,673 + MPMX19_05152 0.34 -1.1
649,673 + MPMX19_05152 0.34 -0.3
649,674 - MPMX19_05152 0.34 -0.1
649,674 - MPMX19_05152 0.34 -0.9
649,674 - MPMX19_05152 0.34 -1.1
649,848 - MPMX19_05152 0.55 -1.9
650,144 + -0.6
650,144 + +0.1
650,144 + +0.1
650,144 + -0.1
650,144 + +0.1
650,145 - -1.1
650,145 - +0.3
650,145 - -0.9
650,145 - -1.0
650,145 - +0.1
650,145 - -0.3
650,145 - -2.4
650,145 - -1.1

Or see this region's nucleotide sequence