Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04933

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04931 and MPMX19_04932 are separated by 271 nucleotidesMPMX19_04932 and MPMX19_04933 are separated by 249 nucleotidesMPMX19_04933 and MPMX19_04934 are separated by 22 nucleotides MPMX19_04931: MPMX19_04931 - Catalase, at 392,011 to 393,462 _04931 MPMX19_04932: MPMX19_04932 - hypothetical protein, at 393,734 to 394,195 _04932 MPMX19_04933: MPMX19_04933 - hypothetical protein, at 394,445 to 395,524 _04933 MPMX19_04934: MPMX19_04934 - hypothetical protein, at 395,547 to 396,572 _04934 Position (kb) 394 395 396Strain fitness (log2 ratio) -2 -1 0 1at 393.697 kb on + strandat 393.697 kb on + strandat 393.697 kb on + strandat 393.697 kb on + strandat 393.698 kb on - strandat 394.006 kb on + strand, within MPMX19_04932at 394.007 kb on - strand, within MPMX19_04932at 394.314 kb on + strandat 394.314 kb on + strandat 394.375 kb on + strandat 394.375 kb on + strandat 394.376 kb on - strandat 394.405 kb on + strandat 394.405 kb on + strandat 394.724 kb on + strand, within MPMX19_04933at 394.724 kb on + strand, within MPMX19_04933at 394.725 kb on - strand, within MPMX19_04933at 394.725 kb on - strand, within MPMX19_04933at 394.725 kb on - strand, within MPMX19_04933at 394.802 kb on + strand, within MPMX19_04933at 394.802 kb on + strand, within MPMX19_04933at 394.802 kb on + strand, within MPMX19_04933at 394.803 kb on - strand, within MPMX19_04933at 394.803 kb on - strand, within MPMX19_04933at 394.817 kb on + strand, within MPMX19_04933at 394.817 kb on + strand, within MPMX19_04933at 394.817 kb on + strand, within MPMX19_04933at 394.817 kb on + strand, within MPMX19_04933at 394.817 kb on + strand, within MPMX19_04933at 394.817 kb on + strand, within MPMX19_04933at 394.818 kb on - strand, within MPMX19_04933at 394.818 kb on - strand, within MPMX19_04933at 394.818 kb on - strand, within MPMX19_04933at 394.818 kb on - strand, within MPMX19_04933at 394.818 kb on - strand, within MPMX19_04933at 394.818 kb on - strand, within MPMX19_04933at 394.818 kb on - strand, within MPMX19_04933at 394.853 kb on + strand, within MPMX19_04933at 394.874 kb on + strand, within MPMX19_04933at 394.874 kb on + strand, within MPMX19_04933at 394.884 kb on - strand, within MPMX19_04933at 394.884 kb on - strand, within MPMX19_04933at 394.925 kb on + strand, within MPMX19_04933at 394.925 kb on + strand, within MPMX19_04933at 394.926 kb on - strand, within MPMX19_04933at 395.033 kb on + strand, within MPMX19_04933at 395.046 kb on - strand, within MPMX19_04933at 395.067 kb on - strand, within MPMX19_04933at 395.067 kb on - strand, within MPMX19_04933at 395.096 kb on + strand, within MPMX19_04933at 395.096 kb on + strand, within MPMX19_04933at 395.096 kb on + strand, within MPMX19_04933at 395.096 kb on + strand, within MPMX19_04933at 395.096 kb on + strand, within MPMX19_04933at 395.659 kb on + strand, within MPMX19_04934at 395.659 kb on + strand, within MPMX19_04934at 395.659 kb on + strand, within MPMX19_04934at 395.660 kb on - strand, within MPMX19_04934at 395.660 kb on - strand, within MPMX19_04934at 395.660 kb on - strand, within MPMX19_04934at 395.660 kb on - strand, within MPMX19_04934at 395.660 kb on - strand, within MPMX19_04934at 395.921 kb on + strand, within MPMX19_04934at 395.921 kb on + strand, within MPMX19_04934at 396.157 kb on + strand, within MPMX19_04934at 396.157 kb on + strand, within MPMX19_04934at 396.157 kb on + strand, within MPMX19_04934at 396.158 kb on - strand, within MPMX19_04934at 396.158 kb on - strand, within MPMX19_04934at 396.388 kb on + strand, within MPMX19_04934at 396.388 kb on + strand, within MPMX19_04934at 396.389 kb on - strand, within MPMX19_04934at 396.389 kb on - strand, within MPMX19_04934at 396.389 kb on - strand, within MPMX19_04934at 396.389 kb on - strand, within MPMX19_04934at 396.389 kb on - strand, within MPMX19_04934

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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393,697 + +0.4
393,697 + +0.4
393,697 + -0.5
393,697 + -1.1
393,698 - +0.1
394,006 + MPMX19_04932 0.59 -1.3
394,007 - MPMX19_04932 0.59 +0.7
394,314 + -1.5
394,314 + +0.4
394,375 + -0.6
394,375 + -0.9
394,376 - +1.3
394,405 + -0.9
394,405 + -1.1
394,724 + MPMX19_04933 0.26 +0.7
394,724 + MPMX19_04933 0.26 -0.6
394,725 - MPMX19_04933 0.26 -0.3
394,725 - MPMX19_04933 0.26 +1.1
394,725 - MPMX19_04933 0.26 -0.6
394,802 + MPMX19_04933 0.33 -1.1
394,802 + MPMX19_04933 0.33 +0.1
394,802 + MPMX19_04933 0.33 +0.7
394,803 - MPMX19_04933 0.33 -1.1
394,803 - MPMX19_04933 0.33 -0.6
394,817 + MPMX19_04933 0.34 -0.3
394,817 + MPMX19_04933 0.34 +0.1
394,817 + MPMX19_04933 0.34 +0.1
394,817 + MPMX19_04933 0.34 -0.3
394,817 + MPMX19_04933 0.34 -0.9
394,817 + MPMX19_04933 0.34 -2.3
394,818 - MPMX19_04933 0.35 +0.1
394,818 - MPMX19_04933 0.35 -1.1
394,818 - MPMX19_04933 0.35 +0.1
394,818 - MPMX19_04933 0.35 -0.3
394,818 - MPMX19_04933 0.35 +0.1
394,818 - MPMX19_04933 0.35 -1.1
394,818 - MPMX19_04933 0.35 +0.1
394,853 + MPMX19_04933 0.38 -0.3
394,874 + MPMX19_04933 0.40 +0.7
394,874 + MPMX19_04933 0.40 -0.6
394,884 - MPMX19_04933 0.41 -1.9
394,884 - MPMX19_04933 0.41 -0.9
394,925 + MPMX19_04933 0.44 -0.3
394,925 + MPMX19_04933 0.44 +0.7
394,926 - MPMX19_04933 0.45 -0.1
395,033 + MPMX19_04933 0.54 -1.1
395,046 - MPMX19_04933 0.56 -1.1
395,067 - MPMX19_04933 0.58 +1.7
395,067 - MPMX19_04933 0.58 +0.7
395,096 + MPMX19_04933 0.60 +0.4
395,096 + MPMX19_04933 0.60 -0.9
395,096 + MPMX19_04933 0.60 -0.3
395,096 + MPMX19_04933 0.60 -1.1
395,096 + MPMX19_04933 0.60 -0.3
395,659 + MPMX19_04934 0.11 +0.5
395,659 + MPMX19_04934 0.11 -1.3
395,659 + MPMX19_04934 0.11 -0.2
395,660 - MPMX19_04934 0.11 -2.6
395,660 - MPMX19_04934 0.11 -0.6
395,660 - MPMX19_04934 0.11 -1.3
395,660 - MPMX19_04934 0.11 +0.0
395,660 - MPMX19_04934 0.11 -1.9
395,921 + MPMX19_04934 0.36 -0.3
395,921 + MPMX19_04934 0.36 -0.1
396,157 + MPMX19_04934 0.59 +0.7
396,157 + MPMX19_04934 0.59 -0.7
396,157 + MPMX19_04934 0.59 -0.5
396,158 - MPMX19_04934 0.60 -1.1
396,158 - MPMX19_04934 0.60 +0.7
396,388 + MPMX19_04934 0.82 +0.4
396,388 + MPMX19_04934 0.82 -0.6
396,389 - MPMX19_04934 0.82 -0.9
396,389 - MPMX19_04934 0.82 -0.4
396,389 - MPMX19_04934 0.82 -0.1
396,389 - MPMX19_04934 0.82 -1.2
396,389 - MPMX19_04934 0.82 -1.5

Or see this region's nucleotide sequence