Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04801

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04799 and MPMX19_04800 are separated by 3 nucleotidesMPMX19_04800 and MPMX19_04801 are separated by 325 nucleotidesMPMX19_04801 and MPMX19_04802 are separated by 304 nucleotidesMPMX19_04802 and MPMX19_04803 are separated by 84 nucleotidesMPMX19_04803 and MPMX19_04804 are separated by 153 nucleotides MPMX19_04799: MPMX19_04799 - D-inositol-3-phosphate glycosyltransferase, at 200,009 to 201,121 _04799 MPMX19_04800: MPMX19_04800 - hypothetical protein, at 201,125 to 201,718 _04800 MPMX19_04801: MPMX19_04801 - D-inositol-3-phosphate glycosyltransferase, at 202,044 to 203,219 _04801 MPMX19_04802: MPMX19_04802 - tRNA-Met, at 203,524 to 203,600 _04802 MPMX19_04803: MPMX19_04803 - 5S ribosomal RNA, at 203,685 to 203,795 _04803 MPMX19_04804: MPMX19_04804 - 23S ribosomal RNA, at 203,949 to 206,684 _04804 Position (kb) 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 201.129 kb on + strandat 201.129 kb on + strandat 201.130 kb on - strandat 201.130 kb on - strandat 201.130 kb on - strandat 201.143 kb on + strandat 201.144 kb on - strandat 201.144 kb on - strandat 201.192 kb on + strand, within MPMX19_04800at 201.192 kb on + strand, within MPMX19_04800at 201.252 kb on + strand, within MPMX19_04800at 201.253 kb on - strand, within MPMX19_04800at 201.258 kb on + strand, within MPMX19_04800at 201.304 kb on + strand, within MPMX19_04800at 201.304 kb on + strand, within MPMX19_04800at 201.304 kb on + strand, within MPMX19_04800at 201.305 kb on - strand, within MPMX19_04800at 201.305 kb on - strand, within MPMX19_04800at 201.305 kb on - strand, within MPMX19_04800at 201.305 kb on - strand, within MPMX19_04800at 201.306 kb on + strand, within MPMX19_04800at 201.307 kb on - strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.431 kb on - strand, within MPMX19_04800at 201.704 kb on + strandat 201.704 kb on + strandat 201.705 kb on - strandat 201.757 kb on - strandat 201.757 kb on - strandat 201.757 kb on - strandat 201.809 kb on + strandat 201.810 kb on - strandat 201.810 kb on - strandat 201.872 kb on + strandat 201.872 kb on + strandat 201.872 kb on + strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.900 kb on - strandat 201.931 kb on + strandat 201.931 kb on + strandat 202.201 kb on + strand, within MPMX19_04801at 202.201 kb on + strand, within MPMX19_04801at 202.201 kb on + strand, within MPMX19_04801at 202.201 kb on + strand, within MPMX19_04801at 202.201 kb on + strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.206 kb on + strand, within MPMX19_04801at 202.206 kb on + strand, within MPMX19_04801at 202.206 kb on + strand, within MPMX19_04801at 202.206 kb on + strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.278 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.438 kb on - strand, within MPMX19_04801at 202.479 kb on + strand, within MPMX19_04801at 202.551 kb on + strand, within MPMX19_04801at 202.551 kb on + strand, within MPMX19_04801at 202.551 kb on + strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.553 kb on + strand, within MPMX19_04801at 202.553 kb on + strand, within MPMX19_04801at 202.553 kb on + strand, within MPMX19_04801at 202.554 kb on - strand, within MPMX19_04801at 202.554 kb on - strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 203.000 kb on + strand, within MPMX19_04801at 203.001 kb on - strand, within MPMX19_04801at 203.001 kb on - strand, within MPMX19_04801at 203.001 kb on - strand, within MPMX19_04801at 203.001 kb on - strand, within MPMX19_04801at 203.115 kb on + strandat 203.115 kb on + strandat 203.116 kb on - strandat 203.257 kb on + strandat 203.257 kb on + strandat 203.258 kb on - strandat 203.258 kb on - strandat 203.258 kb on - strandat 203.258 kb on - strandat 203.469 kb on - strandat 203.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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201,129 + +0.3
201,129 + -1.6
201,130 - -0.5
201,130 - -0.0
201,130 - +2.3
201,143 + -0.6
201,144 - -1.6
201,144 - -0.6
201,192 + MPMX19_04800 0.11 -0.9
201,192 + MPMX19_04800 0.11 -1.8
201,252 + MPMX19_04800 0.21 -0.3
201,253 - MPMX19_04800 0.22 +0.3
201,258 + MPMX19_04800 0.22 -1.5
201,304 + MPMX19_04800 0.30 -0.2
201,304 + MPMX19_04800 0.30 -0.6
201,304 + MPMX19_04800 0.30 -1.1
201,305 - MPMX19_04800 0.30 -0.9
201,305 - MPMX19_04800 0.30 -0.3
201,305 - MPMX19_04800 0.30 -0.5
201,305 - MPMX19_04800 0.30 +0.4
201,306 + MPMX19_04800 0.30 -1.7
201,307 - MPMX19_04800 0.31 -1.1
201,345 + MPMX19_04800 0.37 +0.1
201,345 + MPMX19_04800 0.37 -0.7
201,345 + MPMX19_04800 0.37 +0.1
201,345 + MPMX19_04800 0.37 -2.0
201,345 + MPMX19_04800 0.37 -0.6
201,345 + MPMX19_04800 0.37 -0.9
201,345 + MPMX19_04800 0.37 -0.6
201,345 + MPMX19_04800 0.37 -2.5
201,345 + MPMX19_04800 0.37 +0.3
201,346 - MPMX19_04800 0.37 -0.5
201,346 - MPMX19_04800 0.37 -1.0
201,346 - MPMX19_04800 0.37 +0.9
201,346 - MPMX19_04800 0.37 +0.9
201,346 - MPMX19_04800 0.37 +1.1
201,346 - MPMX19_04800 0.37 +1.0
201,346 - MPMX19_04800 0.37 -1.2
201,346 - MPMX19_04800 0.37 +0.4
201,346 - MPMX19_04800 0.37 -1.1
201,346 - MPMX19_04800 0.37 -0.9
201,346 - MPMX19_04800 0.37 +0.5
201,346 - MPMX19_04800 0.37 -0.5
201,346 - MPMX19_04800 0.37 -0.3
201,431 - MPMX19_04800 0.52 -0.6
201,704 + +0.4
201,704 + -1.3
201,705 - -0.4
201,757 - -1.0
201,757 - -0.8
201,757 - -1.6
201,809 + -0.4
201,810 - -1.2
201,810 - +2.3
201,872 + +0.7
201,872 + +0.1
201,872 + -1.2
201,873 - -0.9
201,873 - -0.5
201,873 - -1.1
201,873 - +0.1
201,873 - -1.6
201,873 - -0.1
201,873 - -0.4
201,873 - -0.0
201,873 - +0.4
201,876 + -0.6
201,876 + -0.3
201,876 + -0.5
201,876 + -1.0
201,876 + -1.7
201,876 + -1.5
201,876 + -0.6
201,876 + -0.5
201,876 + -0.0
201,876 + -1.7
201,876 + -1.1
201,876 + -0.2
201,876 + -3.1
201,876 + +0.7
201,876 + -0.2
201,876 + -0.6
201,876 + -1.5
201,877 - -1.2
201,877 - -0.3
201,877 - +0.4
201,877 - -1.3
201,877 - -1.6
201,877 - +0.1
201,877 - -0.9
201,877 - +0.7
201,877 - +1.6
201,877 - -1.6
201,900 - -0.6
201,931 + -0.3
201,931 + +0.7
202,201 + MPMX19_04801 0.13 +0.0
202,201 + MPMX19_04801 0.13 -1.3
202,201 + MPMX19_04801 0.13 -1.7
202,201 + MPMX19_04801 0.13 -0.3
202,201 + MPMX19_04801 0.13 -1.4
202,202 - MPMX19_04801 0.13 -1.1
202,202 - MPMX19_04801 0.13 -1.5
202,202 - MPMX19_04801 0.13 +0.1
202,202 - MPMX19_04801 0.13 -0.9
202,202 - MPMX19_04801 0.13 -1.1
202,202 - MPMX19_04801 0.13 -1.1
202,206 + MPMX19_04801 0.14 -0.5
202,206 + MPMX19_04801 0.14 -0.3
202,206 + MPMX19_04801 0.14 -0.5
202,206 + MPMX19_04801 0.14 -0.3
202,207 - MPMX19_04801 0.14 +0.7
202,207 - MPMX19_04801 0.14 +0.4
202,207 - MPMX19_04801 0.14 -0.6
202,207 - MPMX19_04801 0.14 +0.3
202,207 - MPMX19_04801 0.14 +0.7
202,207 - MPMX19_04801 0.14 -1.3
202,207 - MPMX19_04801 0.14 -1.1
202,207 - MPMX19_04801 0.14 -1.1
202,278 + MPMX19_04801 0.20 -0.6
202,437 + MPMX19_04801 0.33 +2.3
202,437 + MPMX19_04801 0.33 -1.1
202,437 + MPMX19_04801 0.33 -0.3
202,437 + MPMX19_04801 0.33 -0.6
202,437 + MPMX19_04801 0.33 -0.9
202,437 + MPMX19_04801 0.33 +0.5
202,438 - MPMX19_04801 0.34 +1.0
202,479 + MPMX19_04801 0.37 -0.9
202,551 + MPMX19_04801 0.43 -0.7
202,551 + MPMX19_04801 0.43 +0.7
202,551 + MPMX19_04801 0.43 -1.3
202,552 - MPMX19_04801 0.43 -0.3
202,552 - MPMX19_04801 0.43 +1.7
202,552 - MPMX19_04801 0.43 +0.1
202,552 - MPMX19_04801 0.43 +0.7
202,552 - MPMX19_04801 0.43 -0.6
202,552 - MPMX19_04801 0.43 -0.3
202,552 - MPMX19_04801 0.43 -0.9
202,552 - MPMX19_04801 0.43 -1.0
202,552 - MPMX19_04801 0.43 -0.0
202,553 + MPMX19_04801 0.43 -0.9
202,553 + MPMX19_04801 0.43 -1.5
202,553 + MPMX19_04801 0.43 -1.1
202,554 - MPMX19_04801 0.43 -1.7
202,554 - MPMX19_04801 0.43 -0.3
202,773 + MPMX19_04801 0.62 -1.7
202,773 + MPMX19_04801 0.62 -0.1
202,773 + MPMX19_04801 0.62 -1.0
202,773 + MPMX19_04801 0.62 -2.0
202,773 + MPMX19_04801 0.62 -1.9
202,773 + MPMX19_04801 0.62 -1.9
202,773 + MPMX19_04801 0.62 -1.5
202,773 + MPMX19_04801 0.62 +0.7
202,774 - MPMX19_04801 0.62 +0.1
202,774 - MPMX19_04801 0.62 +3.0
202,774 - MPMX19_04801 0.62 +0.2
202,774 - MPMX19_04801 0.62 +0.1
202,774 - MPMX19_04801 0.62 +0.1
202,774 - MPMX19_04801 0.62 -0.9
202,774 - MPMX19_04801 0.62 -0.9
202,774 - MPMX19_04801 0.62 -0.8
203,000 + MPMX19_04801 0.81 -1.5
203,001 - MPMX19_04801 0.81 -0.6
203,001 - MPMX19_04801 0.81 -1.2
203,001 - MPMX19_04801 0.81 -0.5
203,001 - MPMX19_04801 0.81 -0.3
203,115 + -1.6
203,115 + +1.2
203,116 - -0.6
203,257 + -0.3
203,257 + -1.1
203,258 - -1.5
203,258 - -0.7
203,258 - -1.2
203,258 - -0.3
203,469 - +1.3
203,974 - -0.6

Or see this region's nucleotide sequence