Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04679

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04678 and MPMX19_04679 are separated by 35 nucleotidesMPMX19_04679 and MPMX19_04680 are separated by 15 nucleotidesMPMX19_04680 and MPMX19_04681 are separated by 6 nucleotides MPMX19_04678: MPMX19_04678 - hypothetical protein, at 64,233 to 65,279 _04678 MPMX19_04679: MPMX19_04679 - Spermidine/putrescine transport system permease protein PotB, at 65,315 to 66,172 _04679 MPMX19_04680: MPMX19_04680 - Inner membrane ABC transporter permease protein YdcV, at 66,188 to 67,024 _04680 MPMX19_04681: MPMX19_04681 - 5-hydroxyisourate hydrolase, at 67,031 to 67,384 _04681 Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.435 kb on + strand, within MPMX19_04678at 64.436 kb on - strand, within MPMX19_04678at 64.572 kb on + strand, within MPMX19_04678at 64.572 kb on + strand, within MPMX19_04678at 64.572 kb on + strand, within MPMX19_04678at 64.573 kb on - strand, within MPMX19_04678at 64.573 kb on - strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.575 kb on + strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.576 kb on - strand, within MPMX19_04678at 64.647 kb on + strand, within MPMX19_04678at 64.647 kb on + strand, within MPMX19_04678at 64.647 kb on + strand, within MPMX19_04678at 64.647 kb on + strand, within MPMX19_04678at 64.647 kb on + strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 64.648 kb on - strand, within MPMX19_04678at 65.109 kb on + strand, within MPMX19_04678at 65.109 kb on + strand, within MPMX19_04678at 65.109 kb on + strand, within MPMX19_04678at 65.110 kb on - strand, within MPMX19_04678at 65.110 kb on - strand, within MPMX19_04678at 65.110 kb on - strand, within MPMX19_04678at 65.288 kb on + strandat 65.289 kb on - strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.345 kb on + strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.346 kb on - strandat 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.471 kb on + strand, within MPMX19_04679at 65.472 kb on - strand, within MPMX19_04679at 65.472 kb on - strand, within MPMX19_04679at 65.472 kb on - strand, within MPMX19_04679at 65.472 kb on - strand, within MPMX19_04679at 65.472 kb on - strand, within MPMX19_04679at 65.556 kb on + strand, within MPMX19_04679at 65.557 kb on - strand, within MPMX19_04679at 65.557 kb on - strand, within MPMX19_04679at 65.759 kb on + strand, within MPMX19_04679at 65.759 kb on + strand, within MPMX19_04679at 65.759 kb on + strand, within MPMX19_04679at 65.759 kb on + strand, within MPMX19_04679at 65.760 kb on - strand, within MPMX19_04679at 65.796 kb on + strand, within MPMX19_04679at 65.796 kb on + strand, within MPMX19_04679at 65.796 kb on + strand, within MPMX19_04679at 65.796 kb on + strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.797 kb on - strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.960 kb on + strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 65.961 kb on - strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.032 kb on + strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.033 kb on - strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.038 kb on + strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.039 kb on - strand, within MPMX19_04679at 66.159 kb on - strandat 66.159 kb on - strandat 66.198 kb on - strandat 66.341 kb on + strand, within MPMX19_04680at 66.341 kb on + strand, within MPMX19_04680at 66.342 kb on - strand, within MPMX19_04680at 66.342 kb on - strand, within MPMX19_04680at 66.368 kb on + strand, within MPMX19_04680at 66.368 kb on + strand, within MPMX19_04680at 66.384 kb on - strand, within MPMX19_04680at 66.756 kb on - strand, within MPMX19_04680at 67.158 kb on + strand, within MPMX19_04681at 67.158 kb on + strand, within MPMX19_04681at 67.158 kb on + strand, within MPMX19_04681at 67.159 kb on - strand, within MPMX19_04681at 67.159 kb on - strand, within MPMX19_04681

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
64,435 + MPMX19_04678 0.19 +1.0
64,436 - MPMX19_04678 0.19 -0.1
64,572 + MPMX19_04678 0.32 +0.1
64,572 + MPMX19_04678 0.32 +0.4
64,572 + MPMX19_04678 0.32 +0.4
64,573 - MPMX19_04678 0.32 -0.9
64,573 - MPMX19_04678 0.32 -1.5
64,575 + MPMX19_04678 0.33 -0.1
64,575 + MPMX19_04678 0.33 +2.0
64,575 + MPMX19_04678 0.33 -1.1
64,575 + MPMX19_04678 0.33 -0.6
64,575 + MPMX19_04678 0.33 +0.7
64,575 + MPMX19_04678 0.33 -2.4
64,575 + MPMX19_04678 0.33 -0.6
64,575 + MPMX19_04678 0.33 +0.7
64,575 + MPMX19_04678 0.33 +0.1
64,575 + MPMX19_04678 0.33 -1.3
64,575 + MPMX19_04678 0.33 -0.6
64,575 + MPMX19_04678 0.33 +1.1
64,576 - MPMX19_04678 0.33 -0.3
64,576 - MPMX19_04678 0.33 +1.7
64,576 - MPMX19_04678 0.33 -0.6
64,576 - MPMX19_04678 0.33 +0.7
64,576 - MPMX19_04678 0.33 +2.1
64,576 - MPMX19_04678 0.33 -0.5
64,576 - MPMX19_04678 0.33 +0.5
64,576 - MPMX19_04678 0.33 -1.0
64,576 - MPMX19_04678 0.33 -0.3
64,647 + MPMX19_04678 0.40 -0.5
64,647 + MPMX19_04678 0.40 -0.6
64,647 + MPMX19_04678 0.40 -2.5
64,647 + MPMX19_04678 0.40 +0.2
64,647 + MPMX19_04678 0.40 -2.5
64,648 - MPMX19_04678 0.40 +1.7
64,648 - MPMX19_04678 0.40 -0.6
64,648 - MPMX19_04678 0.40 -0.1
64,648 - MPMX19_04678 0.40 -1.3
64,648 - MPMX19_04678 0.40 -0.9
64,648 - MPMX19_04678 0.40 -0.2
64,648 - MPMX19_04678 0.40 -1.0
64,648 - MPMX19_04678 0.40 -0.8
64,648 - MPMX19_04678 0.40 +0.7
65,109 + MPMX19_04678 0.84 -1.1
65,109 + MPMX19_04678 0.84 -1.6
65,109 + MPMX19_04678 0.84 -0.5
65,110 - MPMX19_04678 0.84 -2.3
65,110 - MPMX19_04678 0.84 -1.6
65,110 - MPMX19_04678 0.84 +1.0
65,288 + +0.3
65,289 - -0.3
65,345 + -0.1
65,345 + -1.6
65,345 + +0.1
65,345 + -0.3
65,345 + +0.7
65,345 + -0.9
65,345 + +0.5
65,346 - -0.1
65,346 - -0.7
65,346 - +0.1
65,346 - -1.0
65,346 - -1.7
65,346 - -0.7
65,346 - +1.1
65,471 + MPMX19_04679 0.18 -2.2
65,471 + MPMX19_04679 0.18 +0.4
65,471 + MPMX19_04679 0.18 +1.0
65,471 + MPMX19_04679 0.18 -0.0
65,471 + MPMX19_04679 0.18 -1.5
65,471 + MPMX19_04679 0.18 +0.4
65,471 + MPMX19_04679 0.18 -1.7
65,471 + MPMX19_04679 0.18 +1.1
65,471 + MPMX19_04679 0.18 +2.3
65,472 - MPMX19_04679 0.18 -0.4
65,472 - MPMX19_04679 0.18 +1.4
65,472 - MPMX19_04679 0.18 -0.3
65,472 - MPMX19_04679 0.18 -1.5
65,472 - MPMX19_04679 0.18 +1.1
65,556 + MPMX19_04679 0.28 +0.1
65,557 - MPMX19_04679 0.28 +1.4
65,557 - MPMX19_04679 0.28 -0.6
65,759 + MPMX19_04679 0.52 -1.6
65,759 + MPMX19_04679 0.52 +0.1
65,759 + MPMX19_04679 0.52 -1.3
65,759 + MPMX19_04679 0.52 -1.9
65,760 - MPMX19_04679 0.52 -1.3
65,796 + MPMX19_04679 0.56 -2.0
65,796 + MPMX19_04679 0.56 +0.3
65,796 + MPMX19_04679 0.56 +1.0
65,796 + MPMX19_04679 0.56 -1.6
65,797 - MPMX19_04679 0.56 -1.5
65,797 - MPMX19_04679 0.56 -2.0
65,797 - MPMX19_04679 0.56 -0.3
65,797 - MPMX19_04679 0.56 -0.1
65,797 - MPMX19_04679 0.56 -0.6
65,797 - MPMX19_04679 0.56 +1.1
65,960 + MPMX19_04679 0.75 -0.3
65,960 + MPMX19_04679 0.75 -0.3
65,960 + MPMX19_04679 0.75 +0.3
65,960 + MPMX19_04679 0.75 -0.3
65,960 + MPMX19_04679 0.75 +0.0
65,960 + MPMX19_04679 0.75 +0.4
65,961 - MPMX19_04679 0.75 +0.1
65,961 - MPMX19_04679 0.75 -1.5
65,961 - MPMX19_04679 0.75 +1.1
65,961 - MPMX19_04679 0.75 -1.1
65,961 - MPMX19_04679 0.75 -0.2
65,961 - MPMX19_04679 0.75 -1.3
65,961 - MPMX19_04679 0.75 -0.3
65,961 - MPMX19_04679 0.75 -0.2
65,961 - MPMX19_04679 0.75 +2.7
66,032 + MPMX19_04679 0.84 -1.6
66,032 + MPMX19_04679 0.84 -0.0
66,032 + MPMX19_04679 0.84 +0.1
66,032 + MPMX19_04679 0.84 -0.9
66,032 + MPMX19_04679 0.84 -3.1
66,032 + MPMX19_04679 0.84 +2.5
66,032 + MPMX19_04679 0.84 -0.3
66,032 + MPMX19_04679 0.84 -1.7
66,032 + MPMX19_04679 0.84 +0.4
66,032 + MPMX19_04679 0.84 +1.7
66,032 + MPMX19_04679 0.84 -0.3
66,032 + MPMX19_04679 0.84 -1.9
66,032 + MPMX19_04679 0.84 -1.5
66,032 + MPMX19_04679 0.84 +0.5
66,032 + MPMX19_04679 0.84 +0.5
66,033 - MPMX19_04679 0.84 -1.1
66,033 - MPMX19_04679 0.84 -0.3
66,033 - MPMX19_04679 0.84 -2.1
66,033 - MPMX19_04679 0.84 +0.3
66,033 - MPMX19_04679 0.84 +0.4
66,033 - MPMX19_04679 0.84 +2.3
66,033 - MPMX19_04679 0.84 +0.1
66,033 - MPMX19_04679 0.84 +0.5
66,033 - MPMX19_04679 0.84 -0.0
66,033 - MPMX19_04679 0.84 -0.3
66,033 - MPMX19_04679 0.84 +0.5
66,033 - MPMX19_04679 0.84 -0.3
66,033 - MPMX19_04679 0.84 +0.7
66,038 + MPMX19_04679 0.84 -0.5
66,038 + MPMX19_04679 0.84 -1.1
66,038 + MPMX19_04679 0.84 -1.5
66,038 + MPMX19_04679 0.84 +0.1
66,038 + MPMX19_04679 0.84 +0.4
66,038 + MPMX19_04679 0.84 -1.6
66,038 + MPMX19_04679 0.84 -1.0
66,038 + MPMX19_04679 0.84 -0.9
66,038 + MPMX19_04679 0.84 -0.9
66,038 + MPMX19_04679 0.84 +0.7
66,039 - MPMX19_04679 0.84 -0.8
66,039 - MPMX19_04679 0.84 +0.2
66,039 - MPMX19_04679 0.84 +1.1
66,039 - MPMX19_04679 0.84 -0.1
66,039 - MPMX19_04679 0.84 -1.2
66,039 - MPMX19_04679 0.84 -0.1
66,039 - MPMX19_04679 0.84 -0.3
66,039 - MPMX19_04679 0.84 -1.0
66,039 - MPMX19_04679 0.84 -0.7
66,039 - MPMX19_04679 0.84 -1.0
66,039 - MPMX19_04679 0.84 +0.1
66,039 - MPMX19_04679 0.84 -1.6
66,039 - MPMX19_04679 0.84 -0.6
66,039 - MPMX19_04679 0.84 +0.9
66,039 - MPMX19_04679 0.84 +0.0
66,039 - MPMX19_04679 0.84 -0.5
66,159 - -2.4
66,159 - -0.9
66,198 - +1.0
66,341 + MPMX19_04680 0.18 +1.7
66,341 + MPMX19_04680 0.18 +0.0
66,342 - MPMX19_04680 0.18 +0.1
66,342 - MPMX19_04680 0.18 -0.6
66,368 + MPMX19_04680 0.22 -1.6
66,368 + MPMX19_04680 0.22 +1.9
66,384 - MPMX19_04680 0.23 -0.1
66,756 - MPMX19_04680 0.68 +0.7
67,158 + MPMX19_04681 0.36 -0.6
67,158 + MPMX19_04681 0.36 -1.5
67,158 + MPMX19_04681 0.36 +0.3
67,159 - MPMX19_04681 0.36 -1.9
67,159 - MPMX19_04681 0.36 -0.9

Or see this region's nucleotide sequence