Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04536

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04535 and MPMX19_04536 are separated by 76 nucleotidesMPMX19_04536 and MPMX19_04537 are separated by 46 nucleotidesMPMX19_04537 and MPMX19_04538 are separated by 252 nucleotides MPMX19_04535: MPMX19_04535 - Maleate isomerase, at 908,561 to 909,367 _04535 MPMX19_04536: MPMX19_04536 - D-amino acid dehydrogenase 1, at 909,444 to 910,691 _04536 MPMX19_04537: MPMX19_04537 - 2-iminobutanoate/2-iminopropanoate deaminase, at 910,738 to 911,088 _04537 MPMX19_04538: MPMX19_04538 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 911,341 to 912,474 _04538 Position (kb) 909 910 911Strain fitness (log2 ratio) -2 -1 0 1 2at 908.562 kb on + strandat 908.874 kb on + strand, within MPMX19_04535at 908.874 kb on + strand, within MPMX19_04535at 908.874 kb on + strand, within MPMX19_04535at 908.875 kb on - strand, within MPMX19_04535at 909.184 kb on - strand, within MPMX19_04535at 909.184 kb on - strand, within MPMX19_04535at 909.184 kb on - strand, within MPMX19_04535at 909.358 kb on - strandat 909.361 kb on + strandat 909.362 kb on - strandat 909.640 kb on + strand, within MPMX19_04536at 909.640 kb on + strand, within MPMX19_04536at 909.640 kb on + strand, within MPMX19_04536at 909.640 kb on + strand, within MPMX19_04536at 909.641 kb on - strand, within MPMX19_04536at 909.641 kb on - strand, within MPMX19_04536at 909.641 kb on - strand, within MPMX19_04536at 909.641 kb on - strand, within MPMX19_04536at 909.787 kb on + strand, within MPMX19_04536at 909.787 kb on + strand, within MPMX19_04536at 909.787 kb on + strand, within MPMX19_04536at 909.788 kb on - strand, within MPMX19_04536at 909.788 kb on - strand, within MPMX19_04536at 909.862 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.866 kb on - strand, within MPMX19_04536at 909.866 kb on - strand, within MPMX19_04536at 909.880 kb on + strand, within MPMX19_04536at 909.880 kb on + strand, within MPMX19_04536at 909.881 kb on - strand, within MPMX19_04536at 909.881 kb on - strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 910.034 kb on - strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.270 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.277 kb on - strand, within MPMX19_04536at 910.277 kb on - strand, within MPMX19_04536at 910.351 kb on + strand, within MPMX19_04536at 910.351 kb on + strand, within MPMX19_04536at 910.352 kb on - strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.535 kb on - strand, within MPMX19_04536at 910.535 kb on - strand, within MPMX19_04536at 910.535 kb on - strand, within MPMX19_04536at 910.642 kb on + strandat 910.642 kb on + strandat 910.643 kb on - strandat 910.643 kb on - strandat 911.021 kb on + strand, within MPMX19_04537at 911.022 kb on - strand, within MPMX19_04537at 911.022 kb on - strand, within MPMX19_04537at 911.073 kb on + strandat 911.073 kb on + strandat 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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908,562 + -0.4
908,874 + MPMX19_04535 0.39 -1.3
908,874 + MPMX19_04535 0.39 +0.4
908,874 + MPMX19_04535 0.39 -1.6
908,875 - MPMX19_04535 0.39 -0.9
909,184 - MPMX19_04535 0.77 -1.7
909,184 - MPMX19_04535 0.77 +2.2
909,184 - MPMX19_04535 0.77 -1.1
909,358 - -1.4
909,361 + -0.6
909,362 - +1.4
909,640 + MPMX19_04536 0.16 -0.6
909,640 + MPMX19_04536 0.16 -1.0
909,640 + MPMX19_04536 0.16 +0.4
909,640 + MPMX19_04536 0.16 -0.1
909,641 - MPMX19_04536 0.16 -0.6
909,641 - MPMX19_04536 0.16 -2.1
909,641 - MPMX19_04536 0.16 +0.0
909,641 - MPMX19_04536 0.16 +1.0
909,787 + MPMX19_04536 0.27 -0.1
909,787 + MPMX19_04536 0.27 -1.4
909,787 + MPMX19_04536 0.27 +1.0
909,788 - MPMX19_04536 0.28 -1.4
909,788 - MPMX19_04536 0.28 -0.9
909,862 + MPMX19_04536 0.33 +1.2
909,865 + MPMX19_04536 0.34 +0.4
909,865 + MPMX19_04536 0.34 +2.0
909,865 + MPMX19_04536 0.34 +1.4
909,865 + MPMX19_04536 0.34 -0.9
909,866 - MPMX19_04536 0.34 -0.6
909,866 - MPMX19_04536 0.34 -0.7
909,880 + MPMX19_04536 0.35 +0.0
909,880 + MPMX19_04536 0.35 +0.7
909,881 - MPMX19_04536 0.35 +0.9
909,881 - MPMX19_04536 0.35 -1.1
909,946 + MPMX19_04536 0.40 +0.3
909,946 + MPMX19_04536 0.40 -0.0
909,946 + MPMX19_04536 0.40 -1.1
909,946 + MPMX19_04536 0.40 -0.3
909,946 + MPMX19_04536 0.40 +0.1
909,946 + MPMX19_04536 0.40 -0.1
909,946 + MPMX19_04536 0.40 -0.6
909,946 + MPMX19_04536 0.40 -0.4
909,946 + MPMX19_04536 0.40 -1.3
909,946 + MPMX19_04536 0.40 -1.6
909,946 + MPMX19_04536 0.40 -1.5
909,947 - MPMX19_04536 0.40 -0.6
909,947 - MPMX19_04536 0.40 -1.7
909,947 - MPMX19_04536 0.40 -0.4
909,947 - MPMX19_04536 0.40 -0.2
909,947 - MPMX19_04536 0.40 -0.1
909,947 - MPMX19_04536 0.40 -0.6
909,947 - MPMX19_04536 0.40 -1.4
909,947 - MPMX19_04536 0.40 +0.2
909,947 - MPMX19_04536 0.40 -0.7
909,947 - MPMX19_04536 0.40 -2.0
910,034 - MPMX19_04536 0.47 -1.4
910,120 + MPMX19_04536 0.54 -0.1
910,120 + MPMX19_04536 0.54 +1.7
910,120 + MPMX19_04536 0.54 -2.0
910,120 + MPMX19_04536 0.54 +0.4
910,120 + MPMX19_04536 0.54 +0.3
910,120 + MPMX19_04536 0.54 -1.1
910,120 + MPMX19_04536 0.54 -1.1
910,120 + MPMX19_04536 0.54 +0.4
910,120 + MPMX19_04536 0.54 -0.0
910,120 + MPMX19_04536 0.54 -0.1
910,120 + MPMX19_04536 0.54 -0.6
910,120 + MPMX19_04536 0.54 +0.4
910,120 + MPMX19_04536 0.54 -1.3
910,121 - MPMX19_04536 0.54 -1.5
910,121 - MPMX19_04536 0.54 -0.9
910,121 - MPMX19_04536 0.54 -1.1
910,121 - MPMX19_04536 0.54 +1.4
910,121 - MPMX19_04536 0.54 -1.1
910,121 - MPMX19_04536 0.54 -0.4
910,121 - MPMX19_04536 0.54 +0.2
910,121 - MPMX19_04536 0.54 -0.7
910,121 - MPMX19_04536 0.54 -0.9
910,121 - MPMX19_04536 0.54 -1.4
910,121 - MPMX19_04536 0.54 -0.6
910,121 - MPMX19_04536 0.54 -0.4
910,270 + MPMX19_04536 0.66 -0.9
910,276 + MPMX19_04536 0.67 -1.1
910,276 + MPMX19_04536 0.67 -0.6
910,276 + MPMX19_04536 0.67 -2.0
910,276 + MPMX19_04536 0.67 -0.1
910,276 + MPMX19_04536 0.67 -1.4
910,277 - MPMX19_04536 0.67 -0.9
910,277 - MPMX19_04536 0.67 -0.1
910,351 + MPMX19_04536 0.73 -0.4
910,351 + MPMX19_04536 0.73 -1.3
910,352 - MPMX19_04536 0.73 +1.0
910,534 + MPMX19_04536 0.87 +1.1
910,534 + MPMX19_04536 0.87 +0.2
910,534 + MPMX19_04536 0.87 +1.4
910,534 + MPMX19_04536 0.87 +2.0
910,534 + MPMX19_04536 0.87 +0.4
910,534 + MPMX19_04536 0.87 +1.1
910,535 - MPMX19_04536 0.87 -0.6
910,535 - MPMX19_04536 0.87 +1.8
910,535 - MPMX19_04536 0.87 -1.2
910,642 + -0.6
910,642 + -1.6
910,643 - +0.4
910,643 - -0.1
911,021 + MPMX19_04537 0.81 +0.9
911,022 - MPMX19_04537 0.81 -0.3
911,022 - MPMX19_04537 0.81 -0.6
911,073 + -0.0
911,073 + -1.3
911,671 + MPMX19_04538 0.29 -1.0
911,671 + MPMX19_04538 0.29 -0.1
911,671 + MPMX19_04538 0.29 +0.1
911,671 + MPMX19_04538 0.29 -1.8
911,671 + MPMX19_04538 0.29 -0.6
911,671 + MPMX19_04538 0.29 -0.9
911,671 + MPMX19_04538 0.29 +0.9
911,671 + MPMX19_04538 0.29 -0.9
911,671 + MPMX19_04538 0.29 -0.7
911,671 + MPMX19_04538 0.29 -0.7
911,672 - MPMX19_04538 0.29 -0.1
911,672 - MPMX19_04538 0.29 -1.7
911,672 - MPMX19_04538 0.29 -1.7
911,672 - MPMX19_04538 0.29 -0.7
911,672 - MPMX19_04538 0.29 -1.0

Or see this region's nucleotide sequence