Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04517

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04516 and MPMX19_04517 are separated by 70 nucleotidesMPMX19_04517 and MPMX19_04518 are separated by 2 nucleotides MPMX19_04516: MPMX19_04516 - Long-chain-fatty-acid--CoA ligase, at 888,299 to 889,819 _04516 MPMX19_04517: MPMX19_04517 - Glycine cleavage system transcriptional activator, at 889,890 to 890,936 _04517 MPMX19_04518: MPMX19_04518 - Acetyl-CoA:oxalate CoA-transferase, at 890,939 to 892,141 _04518 Position (kb) 889 890 891Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 889.053 kb on + strand, within MPMX19_04516at 889.053 kb on + strand, within MPMX19_04516at 889.053 kb on + strand, within MPMX19_04516at 889.053 kb on + strand, within MPMX19_04516at 889.053 kb on + strand, within MPMX19_04516at 889.053 kb on + strand, within MPMX19_04516at 889.053 kb on + strand, within MPMX19_04516at 889.054 kb on - strand, within MPMX19_04516at 889.054 kb on - strand, within MPMX19_04516at 889.054 kb on - strand, within MPMX19_04516at 889.054 kb on - strand, within MPMX19_04516at 889.054 kb on - strand, within MPMX19_04516at 889.054 kb on - strand, within MPMX19_04516at 889.326 kb on + strand, within MPMX19_04516at 889.326 kb on + strand, within MPMX19_04516at 889.326 kb on + strand, within MPMX19_04516at 889.326 kb on + strand, within MPMX19_04516at 889.326 kb on + strand, within MPMX19_04516at 889.326 kb on + strand, within MPMX19_04516at 889.327 kb on - strand, within MPMX19_04516at 889.327 kb on - strand, within MPMX19_04516at 889.327 kb on - strand, within MPMX19_04516at 889.327 kb on - strand, within MPMX19_04516at 889.327 kb on - strand, within MPMX19_04516at 889.327 kb on - strand, within MPMX19_04516at 889.327 kb on - strand, within MPMX19_04516at 889.327 kb on - strand, within MPMX19_04516at 889.524 kb on + strand, within MPMX19_04516at 889.524 kb on + strand, within MPMX19_04516at 889.524 kb on + strand, within MPMX19_04516at 889.524 kb on + strand, within MPMX19_04516at 889.524 kb on + strand, within MPMX19_04516at 889.524 kb on + strand, within MPMX19_04516at 889.525 kb on - strand, within MPMX19_04516at 889.525 kb on - strand, within MPMX19_04516at 889.525 kb on - strand, within MPMX19_04516at 889.545 kb on + strand, within MPMX19_04516at 889.545 kb on + strand, within MPMX19_04516at 889.545 kb on + strand, within MPMX19_04516at 889.545 kb on + strand, within MPMX19_04516at 889.545 kb on + strand, within MPMX19_04516at 889.545 kb on + strand, within MPMX19_04516at 889.545 kb on + strand, within MPMX19_04516at 889.545 kb on + strand, within MPMX19_04516at 889.545 kb on + strand, within MPMX19_04516at 889.546 kb on - strand, within MPMX19_04516at 889.546 kb on - strand, within MPMX19_04516at 889.546 kb on - strand, within MPMX19_04516at 889.546 kb on - strand, within MPMX19_04516at 889.546 kb on - strand, within MPMX19_04516at 889.546 kb on - strand, within MPMX19_04516at 889.566 kb on + strand, within MPMX19_04516at 889.566 kb on + strand, within MPMX19_04516at 889.566 kb on + strand, within MPMX19_04516at 889.566 kb on + strand, within MPMX19_04516at 889.566 kb on + strand, within MPMX19_04516at 889.566 kb on + strand, within MPMX19_04516at 889.566 kb on + strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.567 kb on - strand, within MPMX19_04516at 889.596 kb on + strand, within MPMX19_04516at 889.596 kb on + strand, within MPMX19_04516at 889.596 kb on + strand, within MPMX19_04516at 889.596 kb on + strand, within MPMX19_04516at 889.596 kb on + strand, within MPMX19_04516at 889.596 kb on + strand, within MPMX19_04516at 889.597 kb on - strand, within MPMX19_04516at 889.597 kb on - strand, within MPMX19_04516at 889.597 kb on - strand, within MPMX19_04516at 889.597 kb on - strand, within MPMX19_04516at 889.597 kb on - strand, within MPMX19_04516at 889.597 kb on - strand, within MPMX19_04516at 889.714 kb on - strandat 889.714 kb on - strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.993 kb on + strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.994 kb on - strandat 889.996 kb on + strand, within MPMX19_04517at 889.997 kb on - strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.365 kb on + strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.366 kb on - strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.825 kb on + strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.826 kb on - strand, within MPMX19_04517at 890.827 kb on + strand, within MPMX19_04517at 890.827 kb on + strand, within MPMX19_04517at 890.828 kb on - strand, within MPMX19_04517at 890.828 kb on - strand, within MPMX19_04517at 891.363 kb on + strand, within MPMX19_04518at 891.478 kb on - strand, within MPMX19_04518at 891.723 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.795 kb on + strand, within MPMX19_04518at 891.795 kb on + strand, within MPMX19_04518at 891.911 kb on - strand, within MPMX19_04518at 891.911 kb on - strand, within MPMX19_04518

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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889,053 + MPMX19_04516 0.50 -0.3
889,053 + MPMX19_04516 0.50 +0.4
889,053 + MPMX19_04516 0.50 -0.9
889,053 + MPMX19_04516 0.50 -0.9
889,053 + MPMX19_04516 0.50 -2.0
889,053 + MPMX19_04516 0.50 -0.5
889,053 + MPMX19_04516 0.50 -1.4
889,054 - MPMX19_04516 0.50 -0.1
889,054 - MPMX19_04516 0.50 -0.9
889,054 - MPMX19_04516 0.50 -0.7
889,054 - MPMX19_04516 0.50 -0.9
889,054 - MPMX19_04516 0.50 -0.6
889,054 - MPMX19_04516 0.50 -2.1
889,326 + MPMX19_04516 0.68 -0.1
889,326 + MPMX19_04516 0.68 -0.6
889,326 + MPMX19_04516 0.68 -0.7
889,326 + MPMX19_04516 0.68 +2.0
889,326 + MPMX19_04516 0.68 -1.7
889,326 + MPMX19_04516 0.68 -1.5
889,327 - MPMX19_04516 0.68 +0.5
889,327 - MPMX19_04516 0.68 +0.4
889,327 - MPMX19_04516 0.68 +2.0
889,327 - MPMX19_04516 0.68 -0.6
889,327 - MPMX19_04516 0.68 +0.4
889,327 - MPMX19_04516 0.68 -0.8
889,327 - MPMX19_04516 0.68 +0.6
889,327 - MPMX19_04516 0.68 +0.2
889,524 + MPMX19_04516 0.81 -0.7
889,524 + MPMX19_04516 0.81 -0.1
889,524 + MPMX19_04516 0.81 -2.4
889,524 + MPMX19_04516 0.81 -1.7
889,524 + MPMX19_04516 0.81 -1.0
889,524 + MPMX19_04516 0.81 -0.9
889,525 - MPMX19_04516 0.81 -0.7
889,525 - MPMX19_04516 0.81 -0.0
889,525 - MPMX19_04516 0.81 -0.9
889,545 + MPMX19_04516 0.82 -1.1
889,545 + MPMX19_04516 0.82 -1.4
889,545 + MPMX19_04516 0.82 -1.9
889,545 + MPMX19_04516 0.82 +0.1
889,545 + MPMX19_04516 0.82 -0.7
889,545 + MPMX19_04516 0.82 -1.6
889,545 + MPMX19_04516 0.82 +0.1
889,545 + MPMX19_04516 0.82 +0.0
889,545 + MPMX19_04516 0.82 +0.4
889,546 - MPMX19_04516 0.82 +0.6
889,546 - MPMX19_04516 0.82 -0.1
889,546 - MPMX19_04516 0.82 -2.3
889,546 - MPMX19_04516 0.82 +0.1
889,546 - MPMX19_04516 0.82 -1.0
889,546 - MPMX19_04516 0.82 -0.7
889,566 + MPMX19_04516 0.83 +0.6
889,566 + MPMX19_04516 0.83 +2.7
889,566 + MPMX19_04516 0.83 -1.0
889,566 + MPMX19_04516 0.83 -0.6
889,566 + MPMX19_04516 0.83 +0.1
889,566 + MPMX19_04516 0.83 +1.4
889,566 + MPMX19_04516 0.83 -0.9
889,567 - MPMX19_04516 0.83 -0.1
889,567 - MPMX19_04516 0.83 +0.3
889,567 - MPMX19_04516 0.83 -0.6
889,567 - MPMX19_04516 0.83 -2.3
889,567 - MPMX19_04516 0.83 -1.5
889,567 - MPMX19_04516 0.83 -1.4
889,567 - MPMX19_04516 0.83 +2.0
889,567 - MPMX19_04516 0.83 +0.4
889,567 - MPMX19_04516 0.83 -2.1
889,567 - MPMX19_04516 0.83 -0.1
889,567 - MPMX19_04516 0.83 -1.6
889,567 - MPMX19_04516 0.83 -1.6
889,567 - MPMX19_04516 0.83 -1.4
889,567 - MPMX19_04516 0.83 -0.2
889,567 - MPMX19_04516 0.83 -0.1
889,567 - MPMX19_04516 0.83 -0.6
889,596 + MPMX19_04516 0.85 +0.2
889,596 + MPMX19_04516 0.85 -1.4
889,596 + MPMX19_04516 0.85 -2.9
889,596 + MPMX19_04516 0.85 +0.4
889,596 + MPMX19_04516 0.85 +0.4
889,596 + MPMX19_04516 0.85 -0.9
889,597 - MPMX19_04516 0.85 -0.1
889,597 - MPMX19_04516 0.85 -0.9
889,597 - MPMX19_04516 0.85 +0.7
889,597 - MPMX19_04516 0.85 -2.1
889,597 - MPMX19_04516 0.85 +0.4
889,597 - MPMX19_04516 0.85 -1.4
889,714 - -0.6
889,714 - -0.6
889,993 + +0.4
889,993 + -0.9
889,993 + +0.9
889,993 + +0.9
889,993 + -1.0
889,993 + +1.0
889,993 + -1.4
889,993 + -0.6
889,993 + -0.4
889,993 + -2.3
889,993 + +0.2
889,993 + -1.9
889,993 + -1.4
889,993 + +0.0
889,993 + -1.0
889,994 - +0.9
889,994 - +0.3
889,994 - -1.6
889,994 - -0.4
889,994 - -1.9
889,994 - -0.1
889,994 - +0.1
889,994 - -2.0
889,994 - +0.1
889,994 - -1.1
889,994 - -1.1
889,994 - -0.1
889,996 + MPMX19_04517 0.10 -1.9
889,997 - MPMX19_04517 0.10 -1.0
890,365 + MPMX19_04517 0.45 -2.0
890,365 + MPMX19_04517 0.45 -1.8
890,365 + MPMX19_04517 0.45 -1.4
890,365 + MPMX19_04517 0.45 +0.4
890,365 + MPMX19_04517 0.45 -0.6
890,365 + MPMX19_04517 0.45 +0.7
890,365 + MPMX19_04517 0.45 -0.6
890,365 + MPMX19_04517 0.45 -0.6
890,365 + MPMX19_04517 0.45 +0.3
890,365 + MPMX19_04517 0.45 -1.1
890,365 + MPMX19_04517 0.45 -0.5
890,365 + MPMX19_04517 0.45 -0.8
890,365 + MPMX19_04517 0.45 -0.0
890,365 + MPMX19_04517 0.45 -0.1
890,365 + MPMX19_04517 0.45 -1.1
890,365 + MPMX19_04517 0.45 -0.7
890,366 - MPMX19_04517 0.45 -0.6
890,366 - MPMX19_04517 0.45 +0.4
890,366 - MPMX19_04517 0.45 -0.9
890,366 - MPMX19_04517 0.45 -1.1
890,366 - MPMX19_04517 0.45 +0.0
890,366 - MPMX19_04517 0.45 -0.1
890,366 - MPMX19_04517 0.45 +0.4
890,366 - MPMX19_04517 0.45 +1.4
890,366 - MPMX19_04517 0.45 -0.6
890,366 - MPMX19_04517 0.45 +0.3
890,366 - MPMX19_04517 0.45 -0.6
890,366 - MPMX19_04517 0.45 -2.0
890,366 - MPMX19_04517 0.45 -0.1
890,366 - MPMX19_04517 0.45 -0.7
890,366 - MPMX19_04517 0.45 +0.4
890,366 - MPMX19_04517 0.45 +0.3
890,366 - MPMX19_04517 0.45 +0.1
890,825 + MPMX19_04517 0.89 -2.1
890,825 + MPMX19_04517 0.89 +0.2
890,825 + MPMX19_04517 0.89 -2.1
890,825 + MPMX19_04517 0.89 -0.1
890,825 + MPMX19_04517 0.89 +0.1
890,825 + MPMX19_04517 0.89 -0.1
890,825 + MPMX19_04517 0.89 -1.1
890,825 + MPMX19_04517 0.89 -1.5
890,825 + MPMX19_04517 0.89 -0.1
890,826 - MPMX19_04517 0.89 -1.9
890,826 - MPMX19_04517 0.89 -1.1
890,826 - MPMX19_04517 0.89 +2.4
890,826 - MPMX19_04517 0.89 -3.5
890,826 - MPMX19_04517 0.89 +0.4
890,826 - MPMX19_04517 0.89 -0.1
890,826 - MPMX19_04517 0.89 +1.4
890,826 - MPMX19_04517 0.89 -1.4
890,826 - MPMX19_04517 0.89 -1.0
890,826 - MPMX19_04517 0.89 -2.1
890,827 + MPMX19_04517 0.89 -0.6
890,827 + MPMX19_04517 0.89 -0.6
890,828 - MPMX19_04517 0.90 -0.6
890,828 - MPMX19_04517 0.90 -1.7
891,363 + MPMX19_04518 0.35 -0.9
891,478 - MPMX19_04518 0.45 -0.6
891,723 + MPMX19_04518 0.65 -2.1
891,759 + MPMX19_04518 0.68 +0.7
891,759 + MPMX19_04518 0.68 -2.1
891,759 + MPMX19_04518 0.68 +0.6
891,759 + MPMX19_04518 0.68 -1.6
891,759 + MPMX19_04518 0.68 -0.1
891,760 - MPMX19_04518 0.68 +0.1
891,760 - MPMX19_04518 0.68 +0.0
891,760 - MPMX19_04518 0.68 -1.9
891,760 - MPMX19_04518 0.68 -0.8
891,760 - MPMX19_04518 0.68 +0.4
891,760 - MPMX19_04518 0.68 -0.4
891,760 - MPMX19_04518 0.68 -1.9
891,795 + MPMX19_04518 0.71 -0.9
891,795 + MPMX19_04518 0.71 +0.9
891,911 - MPMX19_04518 0.81 +0.4
891,911 - MPMX19_04518 0.81 +0.6

Or see this region's nucleotide sequence