Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04475 and MPMX19_04476 are separated by 185 nucleotides MPMX19_04476 and MPMX19_04477 are separated by 641 nucleotides
MPMX19_04475: MPMX19_04475 - IS701 family transposase ISPye15, at 842,288 to 843,532
_04475
MPMX19_04476: MPMX19_04476 - hypothetical protein, at 843,718 to 844,134
_04476
MPMX19_04477: MPMX19_04477 - hypothetical protein, at 844,776 to 845,339
_04477
Position (kb) 843
844
845 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.866 kb on - strand, within MPMX19_04475 at 842.866 kb on - strand, within MPMX19_04475 at 842.866 kb on - strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.914 kb on - strand, within MPMX19_04475 at 842.914 kb on - strand, within MPMX19_04475 at 842.914 kb on - strand, within MPMX19_04475 at 842.984 kb on + strand, within MPMX19_04475 at 842.985 kb on - strand, within MPMX19_04475 at 843.072 kb on + strand, within MPMX19_04475 at 843.072 kb on + strand, within MPMX19_04475 at 843.072 kb on + strand, within MPMX19_04475 at 843.072 kb on + strand, within MPMX19_04475 at 843.073 kb on - strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.168 kb on + strand, within MPMX19_04475 at 843.169 kb on - strand, within MPMX19_04475 at 843.169 kb on - strand, within MPMX19_04475 at 843.169 kb on - strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.197 kb on - strand, within MPMX19_04475 at 843.197 kb on - strand, within MPMX19_04475 at 843.197 kb on - strand, within MPMX19_04475 at 843.197 kb on - strand, within MPMX19_04475 at 843.197 kb on - strand, within MPMX19_04475 at 843.310 kb on + strand, within MPMX19_04475 at 843.311 kb on - strand, within MPMX19_04475 at 843.347 kb on - strand, within MPMX19_04475 at 843.498 kb on - strand at 843.498 kb on - strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.586 kb on - strand at 843.586 kb on - strand at 843.586 kb on - strand at 843.586 kb on - strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.592 kb on - strand at 843.592 kb on - strand at 843.592 kb on - strand at 843.592 kb on - strand at 843.592 kb on - strand at 843.633 kb on - strand at 843.633 kb on - strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.735 kb on + strand at 843.735 kb on + strand at 843.736 kb on - strand at 843.740 kb on - strand at 843.740 kb on - strand at 843.740 kb on - strand at 843.740 kb on - strand at 843.740 kb on - strand at 843.740 kb on - strand at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.136 kb on + strand at 844.162 kb on + strand at 844.162 kb on + strand at 844.162 kb on + strand at 844.162 kb on + strand at 844.163 kb on - strand at 844.163 kb on - strand at 844.163 kb on - strand at 844.163 kb on - strand at 844.183 kb on + strand at 844.184 kb on - strand at 844.194 kb on + strand at 844.194 kb on + strand at 844.194 kb on + strand at 844.195 kb on - strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.208 kb on - strand at 844.208 kb on - strand at 844.208 kb on - strand at 844.208 kb on - strand at 844.257 kb on + strand at 844.258 kb on - strand at 844.258 kb on - strand at 844.312 kb on + strand at 844.364 kb on + strand at 844.551 kb on + strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.703 kb on + strand at 844.703 kb on + strand at 844.703 kb on + strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.706 kb on - strand at 844.706 kb on - strand at 844.777 kb on + strand at 844.777 kb on + strand at 844.777 kb on + strand at 844.778 kb on - strand at 844.778 kb on - strand at 844.778 kb on - strand at 845.092 kb on + strand, within MPMX19_04477 at 845.092 kb on + strand, within MPMX19_04477 at 845.093 kb on - strand, within MPMX19_04477 at 845.093 kb on - strand, within MPMX19_04477 at 845.093 kb on - strand, within MPMX19_04477 at 845.104 kb on + strand, within MPMX19_04477 at 845.104 kb on + strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 842,865 + MPMX19_04475 0.46 +0.9 842,865 + MPMX19_04475 0.46 -2.4 842,865 + MPMX19_04475 0.46 +1.4 842,865 + MPMX19_04475 0.46 -0.8 842,865 + MPMX19_04475 0.46 +0.7 842,865 + MPMX19_04475 0.46 -0.9 842,865 + MPMX19_04475 0.46 -0.9 842,866 - MPMX19_04475 0.46 -1.2 842,866 - MPMX19_04475 0.46 -0.1 842,866 - MPMX19_04475 0.46 -2.0 842,913 + MPMX19_04475 0.50 -1.1 842,913 + MPMX19_04475 0.50 -2.5 842,913 + MPMX19_04475 0.50 +0.4 842,913 + MPMX19_04475 0.50 -0.4 842,913 + MPMX19_04475 0.50 -0.5 842,913 + MPMX19_04475 0.50 -0.9 842,914 - MPMX19_04475 0.50 -0.9 842,914 - MPMX19_04475 0.50 -2.3 842,914 - MPMX19_04475 0.50 +0.2 842,984 + MPMX19_04475 0.56 -0.6 842,985 - MPMX19_04475 0.56 +0.4 843,072 + MPMX19_04475 0.63 -0.6 843,072 + MPMX19_04475 0.63 +0.4 843,072 + MPMX19_04475 0.63 -0.9 843,072 + MPMX19_04475 0.63 -0.6 843,073 - MPMX19_04475 0.63 -1.9 843,114 + MPMX19_04475 0.66 +1.4 843,114 + MPMX19_04475 0.66 -0.1 843,114 + MPMX19_04475 0.66 -1.9 843,114 + MPMX19_04475 0.66 -0.1 843,114 + MPMX19_04475 0.66 +0.1 843,114 + MPMX19_04475 0.66 -3.8 843,114 + MPMX19_04475 0.66 -1.4 843,114 + MPMX19_04475 0.66 -0.7 843,114 + MPMX19_04475 0.66 -0.1 843,114 + MPMX19_04475 0.66 -0.3 843,115 - MPMX19_04475 0.66 -0.1 843,115 - MPMX19_04475 0.66 -1.6 843,115 - MPMX19_04475 0.66 -0.4 843,115 - MPMX19_04475 0.66 +0.4 843,115 - MPMX19_04475 0.66 -1.4 843,115 - MPMX19_04475 0.66 +0.0 843,115 - MPMX19_04475 0.66 -0.6 843,168 + MPMX19_04475 0.71 -1.9 843,169 - MPMX19_04475 0.71 -0.6 843,169 - MPMX19_04475 0.71 -1.1 843,169 - MPMX19_04475 0.71 +0.0 843,196 + MPMX19_04475 0.73 -1.7 843,196 + MPMX19_04475 0.73 -0.1 843,196 + MPMX19_04475 0.73 +0.4 843,196 + MPMX19_04475 0.73 -2.1 843,196 + MPMX19_04475 0.73 -0.6 843,196 + MPMX19_04475 0.73 -0.1 843,197 - MPMX19_04475 0.73 -0.1 843,197 - MPMX19_04475 0.73 -0.7 843,197 - MPMX19_04475 0.73 -0.6 843,197 - MPMX19_04475 0.73 -1.4 843,197 - MPMX19_04475 0.73 -2.0 843,310 + MPMX19_04475 0.82 +0.4 843,311 - MPMX19_04475 0.82 -1.3 843,347 - MPMX19_04475 0.85 -0.4 843,498 - -0.1 843,498 - -1.4 843,585 + -0.9 843,585 + +1.9 843,585 + +0.4 843,585 + -1.6 843,585 + -0.9 843,585 + -0.6 843,585 + -0.1 843,585 + -1.1 843,586 - +0.6 843,586 - -0.9 843,586 - -1.4 843,586 - +0.4 843,591 + -0.1 843,591 + -0.0 843,591 + -1.1 843,591 + +1.4 843,591 + +1.1 843,591 + -1.2 843,591 + -0.1 843,591 + +0.7 843,591 + -0.6 843,591 + +0.4 843,591 + -1.4 843,592 - +0.4 843,592 - -1.2 843,592 - -1.7 843,592 - -1.1 843,592 - -1.8 843,633 - -0.7 843,633 - -0.1 843,638 + +0.4 843,638 + -1.1 843,639 - -0.9 843,639 - -0.9 843,639 - -2.3 843,639 - -0.6 843,735 + -0.6 843,735 + +0.9 843,736 - -0.1 843,740 - -0.1 843,740 - -1.1 843,740 - +0.1 843,740 - -0.4 843,740 - -0.5 843,740 - -0.1 844,036 + MPMX19_04476 0.76 -0.6 844,036 + MPMX19_04476 0.76 -1.6 844,036 + MPMX19_04476 0.76 +1.0 844,036 + MPMX19_04476 0.76 -1.4 844,036 + MPMX19_04476 0.76 -1.9 844,036 + MPMX19_04476 0.76 -0.7 844,036 + MPMX19_04476 0.76 -0.1 844,036 + MPMX19_04476 0.76 +0.9 844,036 + MPMX19_04476 0.76 -1.1 844,036 + MPMX19_04476 0.76 +1.4 844,036 + MPMX19_04476 0.76 -0.2 844,037 - MPMX19_04476 0.76 -1.2 844,037 - MPMX19_04476 0.76 +0.2 844,037 - MPMX19_04476 0.76 -0.6 844,037 - MPMX19_04476 0.76 -1.6 844,037 - MPMX19_04476 0.76 +0.4 844,037 - MPMX19_04476 0.76 -0.1 844,037 - MPMX19_04476 0.76 -1.0 844,037 - MPMX19_04476 0.76 +0.1 844,037 - MPMX19_04476 0.76 -0.6 844,037 - MPMX19_04476 0.76 -1.4 844,037 - MPMX19_04476 0.76 -0.9 844,052 + MPMX19_04476 0.80 -0.4 844,052 + MPMX19_04476 0.80 -1.0 844,052 + MPMX19_04476 0.80 -0.9 844,052 + MPMX19_04476 0.80 -0.6 844,053 - MPMX19_04476 0.80 -0.9 844,053 - MPMX19_04476 0.80 -0.1 844,053 - MPMX19_04476 0.80 -0.1 844,053 - MPMX19_04476 0.80 -0.6 844,053 - MPMX19_04476 0.80 -0.1 844,136 + -1.2 844,162 + -1.2 844,162 + +1.2 844,162 + +1.4 844,162 + -1.1 844,163 - -1.4 844,163 - +0.4 844,163 - -1.4 844,163 - -0.4 844,183 + -2.0 844,184 - +0.1 844,194 + +0.4 844,194 + +0.4 844,194 + -0.4 844,195 - +0.1 844,207 + -0.6 844,207 + -1.1 844,207 + -0.4 844,207 + -1.7 844,207 + +0.1 844,207 + -0.9 844,207 + -1.0 844,207 + +3.0 844,208 - -1.6 844,208 - +1.4 844,208 - +0.2 844,208 - -0.6 844,257 + +0.8 844,258 - +0.4 844,258 - -0.4 844,312 + -2.1 844,364 + -0.2 844,551 + +0.9 844,552 - -0.9 844,552 - -0.6 844,552 - -1.1 844,552 - -1.1 844,552 - +0.4 844,703 + -0.1 844,703 + -0.6 844,703 + +1.1 844,704 - -0.4 844,704 - -0.1 844,704 - +0.2 844,704 - -1.1 844,704 - -0.6 844,704 - -1.4 844,704 - +0.4 844,704 - -0.9 844,706 - -0.6 844,706 - +0.4 844,777 + +1.4 844,777 + -0.6 844,777 + +0.0 844,778 - -0.8 844,778 - -1.3 844,778 - +0.7 845,092 + MPMX19_04477 0.56 -0.1 845,092 + MPMX19_04477 0.56 -0.6 845,093 - MPMX19_04477 0.56 -0.5 845,093 - MPMX19_04477 0.56 +0.4 845,093 - MPMX19_04477 0.56 -2.1 845,104 + MPMX19_04477 0.58 -0.9 845,104 + MPMX19_04477 0.58 -0.7 845,105 - MPMX19_04477 0.58 -1.9 845,105 - MPMX19_04477 0.58 -0.7 845,105 - MPMX19_04477 0.58 -1.6 845,105 - MPMX19_04477 0.58 -0.9
Or see this region's nucleotide sequence