Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04411

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04410 and MPMX19_04411 are separated by 385 nucleotidesMPMX19_04411 and MPMX19_04412 are separated by 38 nucleotidesMPMX19_04412 and MPMX19_04413 are separated by 194 nucleotides MPMX19_04410: MPMX19_04410 - Oxalate:formate antiporter, at 773,783 to 775,078 _04410 MPMX19_04411: MPMX19_04411 - hypothetical protein, at 775,464 to 775,679 _04411 MPMX19_04412: MPMX19_04412 - hypothetical protein, at 775,718 to 776,125 _04412 MPMX19_04413: MPMX19_04413 - hypothetical protein, at 776,320 to 776,808 _04413 Position (kb) 775 776Strain fitness (log2 ratio) -2 -1 0 1 2at 774.573 kb on + strand, within MPMX19_04410at 774.573 kb on + strand, within MPMX19_04410at 774.573 kb on + strand, within MPMX19_04410at 774.573 kb on + strand, within MPMX19_04410at 774.573 kb on + strand, within MPMX19_04410at 774.574 kb on - strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.753 kb on + strand, within MPMX19_04410at 774.753 kb on + strand, within MPMX19_04410at 774.753 kb on + strand, within MPMX19_04410at 774.753 kb on + strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.978 kb on + strandat 774.978 kb on + strandat 774.978 kb on + strandat 774.979 kb on - strandat 774.979 kb on - strandat 774.979 kb on - strandat 774.979 kb on - strandat 776.339 kb on + strandat 776.339 kb on + strandat 776.339 kb on + strandat 776.340 kb on - strandat 776.340 kb on - strandat 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.612 kb on + strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413at 776.613 kb on - strand, within MPMX19_04413

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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774,573 + MPMX19_04410 0.61 +0.2
774,573 + MPMX19_04410 0.61 +1.5
774,573 + MPMX19_04410 0.61 -0.2
774,573 + MPMX19_04410 0.61 +0.5
774,573 + MPMX19_04410 0.61 -0.1
774,574 - MPMX19_04410 0.61 -1.5
774,711 + MPMX19_04410 0.72 -1.7
774,711 + MPMX19_04410 0.72 -1.2
774,711 + MPMX19_04410 0.72 -0.8
774,711 + MPMX19_04410 0.72 -0.6
774,711 + MPMX19_04410 0.72 -1.7
774,711 + MPMX19_04410 0.72 -0.5
774,711 + MPMX19_04410 0.72 +0.5
774,711 + MPMX19_04410 0.72 -0.8
774,753 + MPMX19_04410 0.75 -0.5
774,753 + MPMX19_04410 0.75 -1.4
774,753 + MPMX19_04410 0.75 -0.1
774,753 + MPMX19_04410 0.75 +0.4
774,754 - MPMX19_04410 0.75 -0.8
774,754 - MPMX19_04410 0.75 -0.7
774,754 - MPMX19_04410 0.75 -1.6
774,754 - MPMX19_04410 0.75 -0.8
774,754 - MPMX19_04410 0.75 -1.1
774,754 - MPMX19_04410 0.75 +0.9
774,754 - MPMX19_04410 0.75 -0.1
774,754 - MPMX19_04410 0.75 +0.5
774,754 - MPMX19_04410 0.75 -1.1
774,978 + -0.8
774,978 + -1.1
774,978 + +0.2
774,979 - +2.5
774,979 - -0.5
774,979 - +0.9
774,979 - +0.5
776,339 + +1.5
776,339 + -0.1
776,339 + -2.1
776,340 - -2.6
776,340 - -0.1
776,612 + MPMX19_04413 0.60 -0.1
776,612 + MPMX19_04413 0.60 +0.2
776,612 + MPMX19_04413 0.60 -2.0
776,612 + MPMX19_04413 0.60 +0.5
776,612 + MPMX19_04413 0.60 +0.9
776,612 + MPMX19_04413 0.60 +1.1
776,612 + MPMX19_04413 0.60 -1.5
776,612 + MPMX19_04413 0.60 -0.8
776,612 + MPMX19_04413 0.60 -1.3
776,612 + MPMX19_04413 0.60 -0.5
776,612 + MPMX19_04413 0.60 -0.5
776,612 + MPMX19_04413 0.60 +0.1
776,612 + MPMX19_04413 0.60 +0.0
776,612 + MPMX19_04413 0.60 -1.3
776,612 + MPMX19_04413 0.60 -0.5
776,612 + MPMX19_04413 0.60 -0.5
776,612 + MPMX19_04413 0.60 -0.8
776,613 - MPMX19_04413 0.60 -0.5
776,613 - MPMX19_04413 0.60 +0.5
776,613 - MPMX19_04413 0.60 -0.1
776,613 - MPMX19_04413 0.60 -0.8
776,613 - MPMX19_04413 0.60 -0.1
776,613 - MPMX19_04413 0.60 -1.5
776,613 - MPMX19_04413 0.60 +1.0
776,613 - MPMX19_04413 0.60 +0.5
776,613 - MPMX19_04413 0.60 -0.6
776,613 - MPMX19_04413 0.60 -1.8
776,613 - MPMX19_04413 0.60 -0.8
776,613 - MPMX19_04413 0.60 -1.1
776,613 - MPMX19_04413 0.60 -1.0
776,613 - MPMX19_04413 0.60 -0.8
776,613 - MPMX19_04413 0.60 -2.3
776,613 - MPMX19_04413 0.60 -1.1
776,613 - MPMX19_04413 0.60 -1.3
776,613 - MPMX19_04413 0.60 -1.1
776,613 - MPMX19_04413 0.60 -0.1
776,613 - MPMX19_04413 0.60 -0.5
776,613 - MPMX19_04413 0.60 +0.5
776,613 - MPMX19_04413 0.60 -0.3
776,613 - MPMX19_04413 0.60 -0.6
776,613 - MPMX19_04413 0.60 +0.8
776,613 - MPMX19_04413 0.60 +0.2
776,613 - MPMX19_04413 0.60 -1.0
776,613 - MPMX19_04413 0.60 -1.3
776,613 - MPMX19_04413 0.60 +1.1

Or see this region's nucleotide sequence