Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04255

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04254 and MPMX19_04255 are separated by 100 nucleotidesMPMX19_04255 and MPMX19_04256 overlap by 4 nucleotides MPMX19_04254: MPMX19_04254 - NADP-dependent malic enzyme, at 608,807 to 611,119 _04254 MPMX19_04255: MPMX19_04255 - Lipopolysaccharide assembly protein B, at 611,220 to 613,253 _04255 MPMX19_04256: MPMX19_04256 - Photosystem I assembly protein Ycf3, at 613,250 to 617,269 _04256 Position (kb) 611 612 613 614Strain fitness (log2 ratio) -2 -1 0 1at 610.322 kb on + strand, within MPMX19_04254at 610.322 kb on + strand, within MPMX19_04254at 610.323 kb on - strand, within MPMX19_04254at 610.598 kb on + strand, within MPMX19_04254at 610.599 kb on - strand, within MPMX19_04254at 610.599 kb on - strand, within MPMX19_04254at 610.599 kb on - strand, within MPMX19_04254at 611.117 kb on + strandat 611.118 kb on - strandat 611.118 kb on - strandat 611.118 kb on - strandat 611.118 kb on - strandat 611.118 kb on - strandat 611.183 kb on + strandat 611.183 kb on + strandat 611.183 kb on + strandat 611.184 kb on - strandat 611.184 kb on - strandat 611.184 kb on - strandat 611.362 kb on - strandat 611.362 kb on - strandat 611.362 kb on - strandat 611.362 kb on - strandat 611.502 kb on + strand, within MPMX19_04255at 611.503 kb on - strand, within MPMX19_04255at 611.520 kb on + strand, within MPMX19_04255at 611.521 kb on - strand, within MPMX19_04255at 611.668 kb on - strand, within MPMX19_04255at 611.697 kb on + strand, within MPMX19_04255at 611.698 kb on - strand, within MPMX19_04255at 612.202 kb on - strand, within MPMX19_04255at 612.202 kb on - strand, within MPMX19_04255at 612.202 kb on - strand, within MPMX19_04255at 612.375 kb on + strand, within MPMX19_04255at 612.375 kb on + strand, within MPMX19_04255at 612.375 kb on + strand, within MPMX19_04255at 612.375 kb on + strand, within MPMX19_04255at 612.375 kb on + strand, within MPMX19_04255at 612.375 kb on + strand, within MPMX19_04255at 612.375 kb on + strand, within MPMX19_04255at 612.375 kb on + strand, within MPMX19_04255at 612.376 kb on - strand, within MPMX19_04255at 612.376 kb on - strand, within MPMX19_04255at 612.376 kb on - strand, within MPMX19_04255at 612.376 kb on - strand, within MPMX19_04255at 612.376 kb on - strand, within MPMX19_04255at 612.376 kb on - strand, within MPMX19_04255at 612.843 kb on + strand, within MPMX19_04255at 612.844 kb on - strand, within MPMX19_04255at 612.844 kb on - strand, within MPMX19_04255at 612.874 kb on + strand, within MPMX19_04255at 612.874 kb on + strand, within MPMX19_04255at 612.875 kb on - strand, within MPMX19_04255at 612.875 kb on - strand, within MPMX19_04255at 612.909 kb on + strand, within MPMX19_04255at 612.909 kb on + strand, within MPMX19_04255at 612.909 kb on + strand, within MPMX19_04255at 612.909 kb on + strand, within MPMX19_04255at 612.909 kb on + strand, within MPMX19_04255at 612.909 kb on + strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 612.910 kb on - strand, within MPMX19_04255at 613.202 kb on + strandat 613.202 kb on + strandat 613.204 kb on + strandat 613.205 kb on - strandat 613.227 kb on - strandat 613.326 kb on - strandat 613.326 kb on - strandat 613.326 kb on - strandat 613.405 kb on + strandat 613.406 kb on - strandat 613.466 kb on + strandat 613.466 kb on + strandat 613.467 kb on - strandat 613.467 kb on - strandat 613.467 kb on - strandat 613.631 kb on + strandat 613.631 kb on + strandat 613.632 kb on - strandat 613.632 kb on - strandat 613.632 kb on - strandat 614.008 kb on + strand, within MPMX19_04256

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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610,322 + MPMX19_04254 0.65 -0.4
610,322 + MPMX19_04254 0.65 -0.4
610,323 - MPMX19_04254 0.66 -0.0
610,598 + MPMX19_04254 0.77 -0.0
610,599 - MPMX19_04254 0.77 -0.8
610,599 - MPMX19_04254 0.77 -0.0
610,599 - MPMX19_04254 0.77 -0.0
611,117 + +1.1
611,118 - -1.6
611,118 - -1.0
611,118 - +1.6
611,118 - -1.2
611,118 - -1.3
611,183 + -0.8
611,183 + -1.0
611,183 + -1.6
611,184 - +1.0
611,184 - -1.0
611,184 - -0.0
611,362 - -0.4
611,362 - +0.6
611,362 - +0.4
611,362 - +1.6
611,502 + MPMX19_04255 0.14 +0.1
611,503 - MPMX19_04255 0.14 -0.4
611,520 + MPMX19_04255 0.15 -0.6
611,521 - MPMX19_04255 0.15 -1.2
611,668 - MPMX19_04255 0.22 +1.1
611,697 + MPMX19_04255 0.23 -1.4
611,698 - MPMX19_04255 0.24 -0.2
612,202 - MPMX19_04255 0.48 -0.2
612,202 - MPMX19_04255 0.48 -0.6
612,202 - MPMX19_04255 0.48 -0.3
612,375 + MPMX19_04255 0.57 -0.0
612,375 + MPMX19_04255 0.57 -2.0
612,375 + MPMX19_04255 0.57 +0.6
612,375 + MPMX19_04255 0.57 -1.0
612,375 + MPMX19_04255 0.57 +0.6
612,375 + MPMX19_04255 0.57 -1.3
612,375 + MPMX19_04255 0.57 +1.1
612,375 + MPMX19_04255 0.57 -1.2
612,376 - MPMX19_04255 0.57 -1.4
612,376 - MPMX19_04255 0.57 +0.6
612,376 - MPMX19_04255 0.57 +0.2
612,376 - MPMX19_04255 0.57 -0.4
612,376 - MPMX19_04255 0.57 -0.4
612,376 - MPMX19_04255 0.57 -0.1
612,843 + MPMX19_04255 0.80 -0.4
612,844 - MPMX19_04255 0.80 -0.0
612,844 - MPMX19_04255 0.80 -0.2
612,874 + MPMX19_04255 0.81 +0.6
612,874 + MPMX19_04255 0.81 -1.0
612,875 - MPMX19_04255 0.81 +0.1
612,875 - MPMX19_04255 0.81 -0.8
612,909 + MPMX19_04255 0.83 -0.2
612,909 + MPMX19_04255 0.83 -1.6
612,909 + MPMX19_04255 0.83 +0.3
612,909 + MPMX19_04255 0.83 -2.4
612,909 + MPMX19_04255 0.83 -0.0
612,909 + MPMX19_04255 0.83 +0.2
612,910 - MPMX19_04255 0.83 -2.5
612,910 - MPMX19_04255 0.83 -0.3
612,910 - MPMX19_04255 0.83 -2.0
612,910 - MPMX19_04255 0.83 -0.1
612,910 - MPMX19_04255 0.83 -0.3
612,910 - MPMX19_04255 0.83 +0.6
612,910 - MPMX19_04255 0.83 -2.0
612,910 - MPMX19_04255 0.83 -0.4
612,910 - MPMX19_04255 0.83 -0.2
612,910 - MPMX19_04255 0.83 -0.6
612,910 - MPMX19_04255 0.83 -2.6
613,202 + -0.0
613,202 + -0.0
613,204 + -0.2
613,205 - -0.4
613,227 - -1.7
613,326 - -0.4
613,326 - +1.1
613,326 - -0.0
613,405 + -0.8
613,406 - -1.0
613,466 + -1.2
613,466 + -1.4
613,467 - -2.1
613,467 - -0.4
613,467 - -0.4
613,631 + -1.0
613,631 + -1.9
613,632 - -0.0
613,632 - -0.0
613,632 - -1.1
614,008 + MPMX19_04256 0.19 -1.4

Or see this region's nucleotide sequence