Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04099

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04098 and MPMX19_04099 are separated by 259 nucleotidesMPMX19_04099 and MPMX19_04100 are separated by 183 nucleotidesMPMX19_04100 and MPMX19_04101 are separated by 27 nucleotides MPMX19_04098: MPMX19_04098 - Sensor histidine kinase RcsC, at 403,399 to 405,594 _04098 MPMX19_04099: MPMX19_04099 - Chemotaxis protein CheY, at 405,854 to 406,285 _04099 MPMX19_04100: MPMX19_04100 - hypothetical protein, at 406,469 to 407,233 _04100 MPMX19_04101: MPMX19_04101 - hypothetical protein, at 407,261 to 408,565 _04101 Position (kb) 405 406 407Strain fitness (log2 ratio) -2 -1 0 1 2at 405.266 kb on + strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.266 kb on + strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.267 kb on - strand, within MPMX19_04098at 405.395 kb on + strandat 405.428 kb on + strandat 405.428 kb on + strandat 405.429 kb on - strandat 405.429 kb on - strandat 405.429 kb on - strandat 405.429 kb on - strandat 405.429 kb on - strandat 405.641 kb on - strandat 405.723 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.726 kb on + strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.727 kb on - strandat 405.754 kb on + strandat 405.754 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.785 kb on + strandat 405.786 kb on - strandat 405.786 kb on - strandat 405.897 kb on + strandat 405.897 kb on + strandat 405.897 kb on + strandat 405.897 kb on + strandat 405.898 kb on - strand, within MPMX19_04099at 405.898 kb on - strand, within MPMX19_04099at 405.898 kb on - strand, within MPMX19_04099at 405.898 kb on - strand, within MPMX19_04099at 405.953 kb on + strand, within MPMX19_04099at 405.953 kb on + strand, within MPMX19_04099at 405.954 kb on - strand, within MPMX19_04099at 405.954 kb on - strand, within MPMX19_04099at 406.202 kb on + strand, within MPMX19_04099at 406.202 kb on + strand, within MPMX19_04099at 406.203 kb on - strand, within MPMX19_04099at 406.203 kb on - strand, within MPMX19_04099at 406.217 kb on + strand, within MPMX19_04099at 406.218 kb on - strand, within MPMX19_04099at 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.687 kb on + strand, within MPMX19_04100at 406.687 kb on + strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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405,266 + MPMX19_04098 0.85 +0.6
405,266 + MPMX19_04098 0.85 -1.6
405,266 + MPMX19_04098 0.85 -0.4
405,266 + MPMX19_04098 0.85 +1.1
405,266 + MPMX19_04098 0.85 -0.0
405,266 + MPMX19_04098 0.85 -1.9
405,267 - MPMX19_04098 0.85 -0.4
405,267 - MPMX19_04098 0.85 -0.9
405,267 - MPMX19_04098 0.85 -0.4
405,267 - MPMX19_04098 0.85 -0.3
405,267 - MPMX19_04098 0.85 +0.2
405,267 - MPMX19_04098 0.85 -2.1
405,267 - MPMX19_04098 0.85 -1.0
405,395 + +1.9
405,428 + -0.8
405,428 + +1.6
405,429 - -1.4
405,429 - -2.1
405,429 - -0.0
405,429 - -2.3
405,429 - -0.8
405,641 - -1.0
405,723 + +1.0
405,726 + +0.3
405,726 + +0.6
405,726 + -0.4
405,726 + +0.1
405,726 + -1.0
405,726 + -0.0
405,726 + -0.8
405,726 + -0.0
405,726 + -1.6
405,726 + -0.4
405,726 + -0.3
405,726 + +0.6
405,726 + +0.6
405,726 + -1.0
405,727 - +0.6
405,727 - +0.6
405,727 - +0.6
405,727 - +0.2
405,727 - -0.6
405,727 - -0.7
405,754 + -0.1
405,754 + -0.3
405,785 + -0.1
405,785 + -1.3
405,785 + -1.6
405,785 + +1.0
405,785 + -1.9
405,786 - -0.0
405,786 - +0.2
405,897 + -2.3
405,897 + -2.3
405,897 + -0.8
405,897 + -0.0
405,898 - MPMX19_04099 0.10 -2.0
405,898 - MPMX19_04099 0.10 -1.3
405,898 - MPMX19_04099 0.10 -0.4
405,898 - MPMX19_04099 0.10 +0.6
405,953 + MPMX19_04099 0.23 -0.0
405,953 + MPMX19_04099 0.23 -1.0
405,954 - MPMX19_04099 0.23 -1.6
405,954 - MPMX19_04099 0.23 -2.1
406,202 + MPMX19_04099 0.81 -0.0
406,202 + MPMX19_04099 0.81 -0.8
406,203 - MPMX19_04099 0.81 +0.6
406,203 - MPMX19_04099 0.81 -1.9
406,217 + MPMX19_04099 0.84 -0.4
406,218 - MPMX19_04099 0.84 -1.4
406,369 + -1.3
406,369 + -1.1
406,369 + -0.4
406,369 + -2.0
406,369 + -1.5
406,369 + -0.3
406,370 - -0.0
406,370 - -1.9
406,370 - -1.3
406,370 - +0.6
406,687 + MPMX19_04100 0.28 -1.6
406,687 + MPMX19_04100 0.28 -0.0
406,688 - MPMX19_04100 0.29 -0.2
406,688 - MPMX19_04100 0.29 +0.1
406,688 - MPMX19_04100 0.29 -0.0
406,688 - MPMX19_04100 0.29 -0.6
406,688 - MPMX19_04100 0.29 -2.2

Or see this region's nucleotide sequence