Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03937 and MPMX19_03938 are separated by 42 nucleotides MPMX19_03938 and MPMX19_03939 are separated by 11 nucleotides MPMX19_03939 and MPMX19_03940 are separated by 5 nucleotides
MPMX19_03937: MPMX19_03937 - Acyl-CoA dehydrogenase, at 218,013 to 219,146
_03937
MPMX19_03938: MPMX19_03938 - Methylmalonyl-CoA carboxyltransferase 12S subunit, at 219,189 to 220,796
_03938
MPMX19_03939: MPMX19_03939 - Enoyl-CoA-hydratase, at 220,808 to 221,590
_03939
MPMX19_03940: MPMX19_03940 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 221,596 to 223,599
_03940
Position (kb) 219
220
221 Strain fitness (log2 ratio) -2
-1
0
1
2 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.211 kb on + strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.212 kb on - strand, within MPMX19_03937 at 218.583 kb on + strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.701 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 218.797 kb on - strand, within MPMX19_03937 at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.033 kb on + strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.034 kb on - strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.063 kb on + strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.064 kb on - strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.090 kb on + strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.091 kb on - strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.144 kb on + strand at 219.145 kb on - strand at 219.145 kb on - strand at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.432 kb on + strand, within MPMX19_03938 at 219.433 kb on - strand, within MPMX19_03938 at 219.433 kb on - strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.537 kb on + strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.538 kb on - strand, within MPMX19_03938 at 219.540 kb on + strand, within MPMX19_03938 at 219.540 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.609 kb on + strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.610 kb on - strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.690 kb on + strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.691 kb on - strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.768 kb on + strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.769 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 219.931 kb on - strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.056 kb on + strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.057 kb on - strand, within MPMX19_03938 at 220.156 kb on - strand, within MPMX19_03938 at 220.341 kb on + strand, within MPMX19_03938 at 220.341 kb on + strand, within MPMX19_03938 at 220.341 kb on + strand, within MPMX19_03938 at 220.341 kb on + strand, within MPMX19_03938 at 220.342 kb on - strand, within MPMX19_03938 at 220.342 kb on - strand, within MPMX19_03938 at 220.342 kb on - strand, within MPMX19_03938 at 220.342 kb on - strand, within MPMX19_03938 at 220.437 kb on + strand, within MPMX19_03938 at 220.438 kb on - strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.452 kb on + strand, within MPMX19_03938 at 220.453 kb on - strand, within MPMX19_03938 at 220.453 kb on - strand, within MPMX19_03938 at 220.453 kb on - strand, within MPMX19_03938 at 220.453 kb on - strand, within MPMX19_03938 at 220.474 kb on - strand, within MPMX19_03938 at 220.474 kb on - strand, within MPMX19_03938 at 220.474 kb on - strand, within MPMX19_03938 at 220.474 kb on - strand, within MPMX19_03938 at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.662 kb on + strand at 220.663 kb on - strand at 220.663 kb on - strand at 220.663 kb on - strand at 220.663 kb on - strand at 220.663 kb on - strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.665 kb on + strand at 220.666 kb on - strand at 220.666 kb on - strand at 220.666 kb on - strand at 221.249 kb on + strand, within MPMX19_03939 at 221.249 kb on + strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.250 kb on - strand, within MPMX19_03939 at 221.289 kb on - strand, within MPMX19_03939 at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.773 kb on + strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand at 221.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 218,211 + MPMX19_03937 0.17 -0.3 218,211 + MPMX19_03937 0.17 -0.8 218,211 + MPMX19_03937 0.17 -0.2 218,211 + MPMX19_03937 0.17 -0.9 218,212 - MPMX19_03937 0.18 +0.1 218,212 - MPMX19_03937 0.18 +0.2 218,583 + MPMX19_03937 0.50 -2.2 218,701 - MPMX19_03937 0.61 -0.5 218,701 - MPMX19_03937 0.61 +0.1 218,797 - MPMX19_03937 0.69 -0.2 218,797 - MPMX19_03937 0.69 +0.5 218,797 - MPMX19_03937 0.69 -0.2 218,797 - MPMX19_03937 0.69 +0.0 219,033 + +2.2 219,033 + -0.5 219,033 + -0.1 219,033 + +0.9 219,033 + -0.5 219,033 + -0.5 219,033 + -0.1 219,033 + +0.1 219,033 + -0.5 219,034 - -2.1 219,034 - -1.4 219,034 - -0.8 219,034 - -1.5 219,034 - -1.1 219,063 + -0.8 219,063 + -0.7 219,063 + -0.5 219,063 + -1.5 219,063 + -0.8 219,064 - -0.1 219,064 - -0.3 219,064 - -1.0 219,064 - -1.1 219,090 + -1.1 219,090 + +0.5 219,090 + +0.2 219,090 + -2.1 219,090 + +1.9 219,090 + +0.3 219,090 + -0.7 219,090 + +0.3 219,090 + -0.1 219,091 - +0.2 219,091 - -1.7 219,091 - -1.0 219,091 - +1.5 219,091 - +0.7 219,091 - +0.8 219,091 - -2.0 219,091 - -0.5 219,091 - -0.7 219,144 + +0.8 219,144 + +1.5 219,144 + +1.0 219,144 + -1.1 219,145 - +2.2 219,145 - -0.6 219,432 + MPMX19_03938 0.15 +0.8 219,432 + MPMX19_03938 0.15 +0.3 219,432 + MPMX19_03938 0.15 +0.5 219,432 + MPMX19_03938 0.15 -0.4 219,432 + MPMX19_03938 0.15 +0.9 219,432 + MPMX19_03938 0.15 -1.6 219,433 - MPMX19_03938 0.15 -1.5 219,433 - MPMX19_03938 0.15 -1.4 219,537 + MPMX19_03938 0.22 -1.1 219,537 + MPMX19_03938 0.22 -1.3 219,537 + MPMX19_03938 0.22 -1.8 219,537 + MPMX19_03938 0.22 -1.5 219,537 + MPMX19_03938 0.22 -0.5 219,537 + MPMX19_03938 0.22 +0.1 219,537 + MPMX19_03938 0.22 -0.5 219,537 + MPMX19_03938 0.22 -1.0 219,537 + MPMX19_03938 0.22 -0.8 219,537 + MPMX19_03938 0.22 +0.2 219,537 + MPMX19_03938 0.22 +0.0 219,537 + MPMX19_03938 0.22 +1.2 219,537 + MPMX19_03938 0.22 +0.9 219,537 + MPMX19_03938 0.22 -0.5 219,538 - MPMX19_03938 0.22 -1.1 219,538 - MPMX19_03938 0.22 -0.5 219,538 - MPMX19_03938 0.22 -0.1 219,538 - MPMX19_03938 0.22 -0.5 219,538 - MPMX19_03938 0.22 -1.7 219,538 - MPMX19_03938 0.22 -0.1 219,538 - MPMX19_03938 0.22 +0.5 219,538 - MPMX19_03938 0.22 -0.1 219,538 - MPMX19_03938 0.22 -0.3 219,538 - MPMX19_03938 0.22 -1.3 219,538 - MPMX19_03938 0.22 -0.8 219,538 - MPMX19_03938 0.22 +0.3 219,540 + MPMX19_03938 0.22 -0.7 219,540 + MPMX19_03938 0.22 -0.5 219,609 + MPMX19_03938 0.26 +1.5 219,609 + MPMX19_03938 0.26 -0.7 219,609 + MPMX19_03938 0.26 -2.2 219,609 + MPMX19_03938 0.26 -1.1 219,609 + MPMX19_03938 0.26 +0.9 219,609 + MPMX19_03938 0.26 -2.0 219,609 + MPMX19_03938 0.26 -1.5 219,609 + MPMX19_03938 0.26 -0.5 219,609 + MPMX19_03938 0.26 -1.3 219,609 + MPMX19_03938 0.26 -0.5 219,609 + MPMX19_03938 0.26 -1.5 219,609 + MPMX19_03938 0.26 -1.1 219,610 - MPMX19_03938 0.26 -1.0 219,610 - MPMX19_03938 0.26 -1.5 219,610 - MPMX19_03938 0.26 +0.5 219,610 - MPMX19_03938 0.26 -1.4 219,610 - MPMX19_03938 0.26 -1.2 219,610 - MPMX19_03938 0.26 -0.5 219,610 - MPMX19_03938 0.26 -2.2 219,610 - MPMX19_03938 0.26 -1.0 219,610 - MPMX19_03938 0.26 -1.7 219,610 - MPMX19_03938 0.26 -0.1 219,610 - MPMX19_03938 0.26 -1.4 219,610 - MPMX19_03938 0.26 +0.2 219,610 - MPMX19_03938 0.26 +0.6 219,610 - MPMX19_03938 0.26 -1.5 219,610 - MPMX19_03938 0.26 +1.1 219,610 - MPMX19_03938 0.26 -0.5 219,690 + MPMX19_03938 0.31 +0.0 219,690 + MPMX19_03938 0.31 -1.5 219,690 + MPMX19_03938 0.31 +0.3 219,690 + MPMX19_03938 0.31 +0.5 219,690 + MPMX19_03938 0.31 -1.6 219,691 - MPMX19_03938 0.31 +0.8 219,691 - MPMX19_03938 0.31 -1.7 219,691 - MPMX19_03938 0.31 -1.1 219,691 - MPMX19_03938 0.31 -0.8 219,768 + MPMX19_03938 0.36 -2.6 219,768 + MPMX19_03938 0.36 -0.1 219,768 + MPMX19_03938 0.36 -1.1 219,768 + MPMX19_03938 0.36 -1.5 219,768 + MPMX19_03938 0.36 -1.3 219,768 + MPMX19_03938 0.36 -1.2 219,768 + MPMX19_03938 0.36 -2.5 219,768 + MPMX19_03938 0.36 -0.1 219,768 + MPMX19_03938 0.36 -0.3 219,768 + MPMX19_03938 0.36 +0.3 219,768 + MPMX19_03938 0.36 -0.5 219,768 + MPMX19_03938 0.36 -0.7 219,768 + MPMX19_03938 0.36 +0.5 219,768 + MPMX19_03938 0.36 -0.7 219,769 - MPMX19_03938 0.36 -0.8 219,769 - MPMX19_03938 0.36 -1.4 219,769 - MPMX19_03938 0.36 -0.5 219,769 - MPMX19_03938 0.36 +1.1 219,769 - MPMX19_03938 0.36 +0.5 219,769 - MPMX19_03938 0.36 +0.5 219,931 - MPMX19_03938 0.46 -1.1 219,931 - MPMX19_03938 0.46 +0.2 219,931 - MPMX19_03938 0.46 -0.3 220,056 + MPMX19_03938 0.54 -0.5 220,056 + MPMX19_03938 0.54 +0.5 220,056 + MPMX19_03938 0.54 -0.4 220,056 + MPMX19_03938 0.54 -0.5 220,056 + MPMX19_03938 0.54 -1.1 220,056 + MPMX19_03938 0.54 -0.5 220,056 + MPMX19_03938 0.54 +0.2 220,056 + MPMX19_03938 0.54 +0.5 220,057 - MPMX19_03938 0.54 -1.1 220,057 - MPMX19_03938 0.54 -0.5 220,057 - MPMX19_03938 0.54 +1.5 220,057 - MPMX19_03938 0.54 -0.8 220,057 - MPMX19_03938 0.54 -0.8 220,057 - MPMX19_03938 0.54 -0.6 220,057 - MPMX19_03938 0.54 -1.5 220,057 - MPMX19_03938 0.54 +1.1 220,156 - MPMX19_03938 0.60 -2.6 220,341 + MPMX19_03938 0.72 +0.5 220,341 + MPMX19_03938 0.72 +0.5 220,341 + MPMX19_03938 0.72 +0.2 220,341 + MPMX19_03938 0.72 -0.5 220,342 - MPMX19_03938 0.72 -0.1 220,342 - MPMX19_03938 0.72 -1.8 220,342 - MPMX19_03938 0.72 +1.0 220,342 - MPMX19_03938 0.72 +1.5 220,437 + MPMX19_03938 0.78 -2.2 220,438 - MPMX19_03938 0.78 -1.4 220,452 + MPMX19_03938 0.79 +0.2 220,452 + MPMX19_03938 0.79 -0.8 220,452 + MPMX19_03938 0.79 -0.8 220,452 + MPMX19_03938 0.79 +0.1 220,452 + MPMX19_03938 0.79 +0.5 220,452 + MPMX19_03938 0.79 +0.2 220,452 + MPMX19_03938 0.79 -0.8 220,452 + MPMX19_03938 0.79 -0.8 220,453 - MPMX19_03938 0.79 -0.5 220,453 - MPMX19_03938 0.79 +0.5 220,453 - MPMX19_03938 0.79 +1.5 220,453 - MPMX19_03938 0.79 +0.2 220,474 - MPMX19_03938 0.80 +0.7 220,474 - MPMX19_03938 0.80 -2.4 220,474 - MPMX19_03938 0.80 -1.2 220,474 - MPMX19_03938 0.80 -1.7 220,662 + -0.9 220,662 + +0.2 220,662 + +0.5 220,662 + +0.5 220,662 + -0.5 220,662 + +2.5 220,662 + -0.4 220,662 + -0.3 220,662 + -2.7 220,662 + -0.1 220,663 - +0.9 220,663 - +0.5 220,663 - -0.6 220,663 - +0.5 220,663 - -1.3 220,665 + -0.1 220,665 + -0.5 220,665 + +0.5 220,665 + -1.3 220,665 + +1.8 220,665 + -1.1 220,665 + +1.5 220,665 + -1.7 220,666 - -1.1 220,666 - +0.5 220,666 - -0.8 221,249 + MPMX19_03939 0.56 -0.8 221,249 + MPMX19_03939 0.56 -1.3 221,250 - MPMX19_03939 0.56 -1.8 221,250 - MPMX19_03939 0.56 +0.1 221,250 - MPMX19_03939 0.56 -1.3 221,250 - MPMX19_03939 0.56 -0.2 221,250 - MPMX19_03939 0.56 -1.5 221,250 - MPMX19_03939 0.56 -0.8 221,289 - MPMX19_03939 0.61 -0.8 221,773 + -0.1 221,773 + +0.5 221,773 + +0.9 221,773 + +0.7 221,773 + -0.1 221,773 + -1.3 221,773 + -1.9 221,773 + +0.6 221,773 + +0.5 221,773 + -0.8 221,774 - +1.5 221,774 - -0.9 221,774 - -0.7 221,774 - -0.1 221,774 - -0.6 221,774 - -0.5 221,774 - -2.2 221,774 - +0.2 221,774 - -1.0
Or see this region's nucleotide sequence