Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03574

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03572 and MPMX19_03573 are separated by 25 nucleotidesMPMX19_03573 and MPMX19_03574 are separated by 103 nucleotidesMPMX19_03574 and MPMX19_03575 are separated by 12 nucleotidesMPMX19_03575 and MPMX19_03576 are separated by 153 nucleotides MPMX19_03572: MPMX19_03572 - Long-chain-fatty-acid--CoA ligase, at 992,895 to 994,412 _03572 MPMX19_03573: MPMX19_03573 - hypothetical protein, at 994,438 to 995,295 _03573 MPMX19_03574: MPMX19_03574 - Aurachin B dehydrogenase, at 995,399 to 996,286 _03574 MPMX19_03575: MPMX19_03575 - HTH-type transcriptional regulator NimR, at 996,299 to 997,075 _03575 MPMX19_03576: MPMX19_03576 - Fosmidomycin resistance protein, at 997,229 to 998,425 _03576 Position (kb) 995 996 997Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 994.439 kb on + strandat 994.565 kb on + strand, within MPMX19_03573at 994.565 kb on + strand, within MPMX19_03573at 994.566 kb on - strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.628 kb on + strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.629 kb on - strand, within MPMX19_03573at 994.853 kb on + strand, within MPMX19_03573at 994.854 kb on - strand, within MPMX19_03573at 994.988 kb on + strand, within MPMX19_03573at 994.988 kb on + strand, within MPMX19_03573at 994.988 kb on + strand, within MPMX19_03573at 994.989 kb on - strand, within MPMX19_03573at 995.126 kb on + strand, within MPMX19_03573at 995.126 kb on + strand, within MPMX19_03573at 995.126 kb on + strand, within MPMX19_03573at 995.126 kb on + strand, within MPMX19_03573at 995.127 kb on - strand, within MPMX19_03573at 995.127 kb on - strand, within MPMX19_03573at 995.127 kb on - strand, within MPMX19_03573at 995.127 kb on - strand, within MPMX19_03573at 995.127 kb on - strand, within MPMX19_03573at 995.316 kb on + strandat 995.317 kb on - strandat 995.318 kb on + strandat 995.318 kb on + strandat 995.321 kb on + strandat 995.322 kb on - strandat 995.349 kb on - strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.404 kb on + strandat 995.405 kb on - strandat 995.405 kb on - strandat 995.405 kb on - strandat 995.405 kb on - strandat 995.405 kb on - strandat 995.405 kb on - strandat 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.948 kb on + strand, within MPMX19_03574at 995.949 kb on - strand, within MPMX19_03574at 995.949 kb on - strand, within MPMX19_03574at 995.949 kb on - strand, within MPMX19_03574at 995.949 kb on - strand, within MPMX19_03574at 995.951 kb on - strand, within MPMX19_03574at 996.008 kb on + strand, within MPMX19_03574at 996.318 kb on + strandat 996.381 kb on + strand, within MPMX19_03575at 996.382 kb on - strand, within MPMX19_03575at 996.382 kb on - strand, within MPMX19_03575at 996.382 kb on - strand, within MPMX19_03575at 996.663 kb on + strand, within MPMX19_03575at 996.708 kb on + strand, within MPMX19_03575at 996.709 kb on - strand, within MPMX19_03575at 996.709 kb on - strand, within MPMX19_03575at 996.709 kb on - strand, within MPMX19_03575at 996.709 kb on - strand, within MPMX19_03575at 996.709 kb on - strand, within MPMX19_03575at 997.005 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.133 kb on + strandat 997.134 kb on - strandat 997.134 kb on - strandat 997.134 kb on - strandat 997.134 kb on - strandat 997.134 kb on - strandat 997.139 kb on + strandat 997.140 kb on - strandat 997.140 kb on - strandat 997.140 kb on - strandat 997.140 kb on - strandat 997.140 kb on - strandat 997.237 kb on + strandat 997.237 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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994,439 + -1.0
994,565 + MPMX19_03573 0.15 +0.7
994,565 + MPMX19_03573 0.15 -1.2
994,566 - MPMX19_03573 0.15 +0.7
994,628 + MPMX19_03573 0.22 -0.6
994,628 + MPMX19_03573 0.22 +0.5
994,628 + MPMX19_03573 0.22 -0.3
994,628 + MPMX19_03573 0.22 +2.0
994,628 + MPMX19_03573 0.22 +0.3
994,628 + MPMX19_03573 0.22 +0.7
994,628 + MPMX19_03573 0.22 -0.0
994,628 + MPMX19_03573 0.22 -0.4
994,628 + MPMX19_03573 0.22 +1.3
994,629 - MPMX19_03573 0.22 -0.9
994,629 - MPMX19_03573 0.22 -0.6
994,629 - MPMX19_03573 0.22 -0.1
994,629 - MPMX19_03573 0.22 +0.9
994,629 - MPMX19_03573 0.22 -3.1
994,629 - MPMX19_03573 0.22 +0.4
994,853 + MPMX19_03573 0.48 -0.5
994,854 - MPMX19_03573 0.48 +0.4
994,988 + MPMX19_03573 0.64 -1.6
994,988 + MPMX19_03573 0.64 -1.9
994,988 + MPMX19_03573 0.64 -0.6
994,989 - MPMX19_03573 0.64 +0.7
995,126 + MPMX19_03573 0.80 -0.3
995,126 + MPMX19_03573 0.80 -2.8
995,126 + MPMX19_03573 0.80 -2.2
995,126 + MPMX19_03573 0.80 -0.7
995,127 - MPMX19_03573 0.80 -0.3
995,127 - MPMX19_03573 0.80 +0.5
995,127 - MPMX19_03573 0.80 +0.1
995,127 - MPMX19_03573 0.80 -0.3
995,127 - MPMX19_03573 0.80 -1.3
995,316 + -2.5
995,317 - +0.9
995,318 + -1.8
995,318 + -0.1
995,321 + -0.0
995,322 - +0.1
995,349 - -0.1
995,404 + +2.3
995,404 + +0.1
995,404 + -0.6
995,404 + -0.5
995,404 + -0.3
995,404 + +0.3
995,404 + -1.3
995,405 - -1.1
995,405 - +0.3
995,405 - -0.3
995,405 - -0.9
995,405 - -1.3
995,405 - +1.2
995,948 + MPMX19_03574 0.62 -1.1
995,948 + MPMX19_03574 0.62 -0.8
995,948 + MPMX19_03574 0.62 -0.4
995,948 + MPMX19_03574 0.62 -0.9
995,948 + MPMX19_03574 0.62 -0.3
995,948 + MPMX19_03574 0.62 -0.6
995,948 + MPMX19_03574 0.62 -1.3
995,948 + MPMX19_03574 0.62 -1.8
995,948 + MPMX19_03574 0.62 -1.0
995,949 - MPMX19_03574 0.62 -1.7
995,949 - MPMX19_03574 0.62 -0.2
995,949 - MPMX19_03574 0.62 -1.3
995,949 - MPMX19_03574 0.62 -1.7
995,951 - MPMX19_03574 0.62 -1.1
996,008 + MPMX19_03574 0.69 +0.1
996,318 + -0.6
996,381 + MPMX19_03575 0.11 +0.4
996,382 - MPMX19_03575 0.11 +0.9
996,382 - MPMX19_03575 0.11 -0.3
996,382 - MPMX19_03575 0.11 -0.9
996,663 + MPMX19_03575 0.47 -1.8
996,708 + MPMX19_03575 0.53 +0.5
996,709 - MPMX19_03575 0.53 -0.9
996,709 - MPMX19_03575 0.53 -0.9
996,709 - MPMX19_03575 0.53 -0.3
996,709 - MPMX19_03575 0.53 -1.0
996,709 - MPMX19_03575 0.53 -1.1
997,005 + +0.1
997,133 + -0.6
997,133 + -0.0
997,133 + +1.1
997,133 + -0.6
997,133 + -2.0
997,133 + +1.0
997,133 + -1.2
997,133 + -0.2
997,133 + -0.3
997,134 - -1.0
997,134 - -1.8
997,134 - +0.7
997,134 - -0.6
997,134 - -1.6
997,139 + +0.1
997,140 - +0.5
997,140 - -0.9
997,140 - -1.9
997,140 - -0.4
997,140 - -0.9
997,237 + +0.5
997,237 + -0.6

Or see this region's nucleotide sequence