Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03457 and MPMX19_03458 are separated by 291 nucleotides MPMX19_03458 and MPMX19_03459 are separated by 68 nucleotides
MPMX19_03457: MPMX19_03457 - hypothetical protein, at 853,315 to 855,117
_03457
MPMX19_03458: MPMX19_03458 - hypothetical protein, at 855,409 to 856,488
_03458
MPMX19_03459: MPMX19_03459 - hypothetical protein, at 856,557 to 868,442
_03459
Position (kb) 855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 854.564 kb on + strand, within MPMX19_03457 at 854.564 kb on + strand, within MPMX19_03457 at 854.565 kb on - strand, within MPMX19_03457 at 854.882 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 855.117 kb on + strand at 855.117 kb on + strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.177 kb on - strand at 855.177 kb on - strand at 855.177 kb on - strand at 855.244 kb on + strand at 855.244 kb on + strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.331 kb on + strand at 855.366 kb on - strand at 855.462 kb on + strand at 855.462 kb on + strand at 855.462 kb on + strand at 855.463 kb on - strand at 855.463 kb on - strand at 855.463 kb on - strand at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.690 kb on + strand, within MPMX19_03458 at 855.690 kb on + strand, within MPMX19_03458 at 855.690 kb on + strand, within MPMX19_03458 at 855.691 kb on - strand, within MPMX19_03458 at 855.715 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 856.381 kb on + strand at 856.381 kb on + strand at 856.381 kb on + strand at 856.382 kb on - strand at 856.382 kb on - strand at 856.382 kb on - strand at 856.530 kb on + strand at 856.530 kb on + strand at 856.531 kb on - strand at 856.531 kb on - strand at 856.531 kb on - strand at 856.531 kb on - strand at 856.574 kb on + strand at 856.575 kb on - strand at 856.620 kb on + strand at 856.620 kb on + strand at 856.621 kb on - strand at 856.621 kb on - strand at 856.621 kb on - strand at 856.701 kb on + strand at 856.701 kb on + strand at 856.701 kb on + strand at 856.702 kb on - strand at 856.702 kb on - strand at 856.702 kb on - strand at 856.785 kb on + strand at 856.785 kb on + strand at 856.947 kb on + strand at 856.947 kb on + strand at 856.947 kb on + strand at 856.947 kb on + strand at 856.947 kb on + strand at 856.948 kb on - strand at 856.948 kb on - strand at 856.948 kb on - strand at 856.948 kb on - strand at 857.032 kb on - strand at 857.238 kb on + strand at 857.238 kb on + strand at 857.238 kb on + strand at 857.238 kb on + strand at 857.239 kb on - strand at 857.239 kb on - strand at 857.239 kb on - strand at 857.313 kb on + strand at 857.313 kb on + strand at 857.313 kb on + strand at 857.313 kb on + strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.314 kb on - strand at 857.340 kb on + strand at 857.340 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 854,564 + MPMX19_03457 0.69 -1.1 854,564 + MPMX19_03457 0.69 -2.1 854,565 - MPMX19_03457 0.69 -1.7 854,882 + MPMX19_03457 0.87 +0.5 854,912 + MPMX19_03457 0.89 -1.9 854,912 + MPMX19_03457 0.89 -1.5 854,912 + MPMX19_03457 0.89 -1.6 854,912 + MPMX19_03457 0.89 -0.0 854,912 + MPMX19_03457 0.89 +0.7 854,912 + MPMX19_03457 0.89 +0.0 854,913 - MPMX19_03457 0.89 -1.1 854,913 - MPMX19_03457 0.89 -1.1 854,913 - MPMX19_03457 0.89 +1.0 854,913 - MPMX19_03457 0.89 +1.1 854,913 - MPMX19_03457 0.89 +0.4 854,913 - MPMX19_03457 0.89 -1.9 855,117 + -0.5 855,117 + +2.1 855,118 - -0.5 855,118 - +1.3 855,118 - -1.5 855,118 - -0.6 855,118 - -1.9 855,140 + +0.4 855,140 + +0.1 855,140 + -0.3 855,140 + +0.5 855,140 + -0.6 855,141 - -1.3 855,141 - -1.9 855,141 - -0.3 855,141 - -0.1 855,141 - +0.9 855,170 + -0.3 855,170 + +0.7 855,170 + -1.3 855,170 + +1.3 855,170 + +0.4 855,170 + -0.7 855,170 + -0.6 855,171 - -1.3 855,171 - -0.5 855,171 - -0.1 855,171 - -0.4 855,171 - +0.1 855,171 - +0.1 855,171 - -2.4 855,171 - +0.4 855,177 - -1.7 855,177 - -1.5 855,177 - -1.7 855,244 + +0.7 855,244 + +0.4 855,245 - +0.4 855,245 - -1.7 855,245 - -1.2 855,245 - +1.4 855,245 - +0.4 855,331 + -0.9 855,366 - -0.3 855,462 + -1.2 855,462 + -1.3 855,462 + +0.0 855,463 - -1.1 855,463 - +1.3 855,463 - +0.7 855,520 + MPMX19_03458 0.10 -1.1 855,520 + MPMX19_03458 0.10 +0.4 855,520 + MPMX19_03458 0.10 +0.7 855,520 + MPMX19_03458 0.10 +0.4 855,520 + MPMX19_03458 0.10 -1.1 855,520 + MPMX19_03458 0.10 -1.5 855,520 + MPMX19_03458 0.10 -2.0 855,520 + MPMX19_03458 0.10 -1.3 855,521 - MPMX19_03458 0.10 -1.0 855,521 - MPMX19_03458 0.10 -0.6 855,521 - MPMX19_03458 0.10 +1.0 855,521 - MPMX19_03458 0.10 -0.9 855,521 - MPMX19_03458 0.10 -0.6 855,521 - MPMX19_03458 0.10 +0.4 855,690 + MPMX19_03458 0.26 -0.9 855,690 + MPMX19_03458 0.26 -0.5 855,690 + MPMX19_03458 0.26 +0.7 855,691 - MPMX19_03458 0.26 -2.5 855,715 + MPMX19_03458 0.28 -0.6 855,733 + MPMX19_03458 0.30 +1.1 855,733 + MPMX19_03458 0.30 +0.8 855,733 + MPMX19_03458 0.30 -1.0 855,733 + MPMX19_03458 0.30 +0.8 855,733 + MPMX19_03458 0.30 +0.7 855,733 + MPMX19_03458 0.30 +2.7 855,733 + MPMX19_03458 0.30 -0.3 855,733 + MPMX19_03458 0.30 +0.1 855,733 + MPMX19_03458 0.30 -2.6 855,733 + MPMX19_03458 0.30 -1.6 855,733 + MPMX19_03458 0.30 +0.4 855,733 + MPMX19_03458 0.30 -1.5 855,733 + MPMX19_03458 0.30 +0.4 855,734 - MPMX19_03458 0.30 +0.7 855,734 - MPMX19_03458 0.30 +1.7 855,734 - MPMX19_03458 0.30 +0.4 855,734 - MPMX19_03458 0.30 -0.9 855,734 - MPMX19_03458 0.30 -1.7 855,734 - MPMX19_03458 0.30 -0.5 855,734 - MPMX19_03458 0.30 +0.1 855,734 - MPMX19_03458 0.30 +3.3 855,734 - MPMX19_03458 0.30 -0.3 855,734 - MPMX19_03458 0.30 -1.4 855,734 - MPMX19_03458 0.30 -1.8 855,734 - MPMX19_03458 0.30 +0.7 855,734 - MPMX19_03458 0.30 -0.3 855,734 - MPMX19_03458 0.30 +0.1 855,734 - MPMX19_03458 0.30 -1.3 856,381 + -0.1 856,381 + +0.7 856,381 + +0.7 856,382 - -0.4 856,382 - -2.5 856,382 - -0.8 856,530 + +1.4 856,530 + -1.1 856,531 - -0.9 856,531 - -0.5 856,531 - -1.6 856,531 - -0.7 856,574 + +0.7 856,575 - -1.1 856,620 + -1.5 856,620 + +0.1 856,621 - -2.4 856,621 - -0.6 856,621 - -0.5 856,701 + -0.6 856,701 + +0.4 856,701 + -2.3 856,702 - -0.7 856,702 - +0.0 856,702 - -0.5 856,785 + +0.1 856,785 + -0.3 856,947 + +0.1 856,947 + -0.1 856,947 + -0.6 856,947 + -0.1 856,947 + -0.5 856,948 - -0.7 856,948 - +0.6 856,948 - -0.9 856,948 - +0.7 857,032 - -0.2 857,238 + +0.4 857,238 + -0.5 857,238 + -0.3 857,238 + -0.9 857,239 - -0.9 857,239 - +0.7 857,239 - +0.4 857,313 + +0.1 857,313 + -1.1 857,313 + +0.9 857,313 + -0.9 857,314 - -0.8 857,314 - -2.8 857,314 - -0.6 857,314 - -2.0 857,314 - -1.6 857,314 - +0.1 857,314 - -0.9 857,340 + -2.0 857,340 + -1.2
Or see this region's nucleotide sequence