Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03441

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03440 and MPMX19_03441 are separated by 91 nucleotidesMPMX19_03441 and MPMX19_03442 are separated by 131 nucleotides MPMX19_03440: MPMX19_03440 - hypothetical protein, at 834,886 to 835,839 _03440 MPMX19_03441: MPMX19_03441 - hypothetical protein, at 835,931 to 837,115 _03441 MPMX19_03442: MPMX19_03442 - hypothetical protein, at 837,247 to 838,260 _03442 Position (kb) 835 836 837 838Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.991 kb on + strand, within MPMX19_03440at 834.992 kb on - strand, within MPMX19_03440at 834.992 kb on - strand, within MPMX19_03440at 834.992 kb on - strand, within MPMX19_03440at 834.992 kb on - strand, within MPMX19_03440at 834.992 kb on - strand, within MPMX19_03440at 834.992 kb on - strand, within MPMX19_03440at 835.048 kb on + strand, within MPMX19_03440at 835.048 kb on + strand, within MPMX19_03440at 835.048 kb on + strand, within MPMX19_03440at 835.048 kb on + strand, within MPMX19_03440at 835.048 kb on + strand, within MPMX19_03440at 835.048 kb on + strand, within MPMX19_03440at 835.048 kb on + strand, within MPMX19_03440at 835.049 kb on - strand, within MPMX19_03440at 835.049 kb on - strand, within MPMX19_03440at 835.049 kb on - strand, within MPMX19_03440at 835.049 kb on - strand, within MPMX19_03440at 835.049 kb on - strand, within MPMX19_03440at 835.165 kb on + strand, within MPMX19_03440at 835.165 kb on + strand, within MPMX19_03440at 835.166 kb on - strand, within MPMX19_03440at 835.166 kb on - strand, within MPMX19_03440at 835.166 kb on - strand, within MPMX19_03440at 835.166 kb on - strand, within MPMX19_03440at 835.260 kb on + strand, within MPMX19_03440at 835.261 kb on - strand, within MPMX19_03440at 835.261 kb on - strand, within MPMX19_03440at 835.288 kb on + strand, within MPMX19_03440at 835.288 kb on + strand, within MPMX19_03440at 835.288 kb on + strand, within MPMX19_03440at 835.288 kb on + strand, within MPMX19_03440at 835.288 kb on + strand, within MPMX19_03440at 835.288 kb on + strand, within MPMX19_03440at 835.288 kb on + strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.289 kb on - strand, within MPMX19_03440at 835.342 kb on + strand, within MPMX19_03440at 835.384 kb on + strand, within MPMX19_03440at 835.384 kb on + strand, within MPMX19_03440at 835.384 kb on + strand, within MPMX19_03440at 835.385 kb on - strand, within MPMX19_03440at 835.385 kb on - strand, within MPMX19_03440at 835.385 kb on - strand, within MPMX19_03440at 835.385 kb on - strand, within MPMX19_03440at 835.396 kb on + strand, within MPMX19_03440at 835.396 kb on + strand, within MPMX19_03440at 835.396 kb on + strand, within MPMX19_03440at 835.397 kb on - strand, within MPMX19_03440at 835.397 kb on - strand, within MPMX19_03440at 835.397 kb on - strand, within MPMX19_03440at 835.397 kb on - strand, within MPMX19_03440at 835.487 kb on - strand, within MPMX19_03440at 835.487 kb on - strand, within MPMX19_03440at 835.487 kb on - strand, within MPMX19_03440at 835.487 kb on - strand, within MPMX19_03440at 835.615 kb on + strand, within MPMX19_03440at 835.616 kb on - strand, within MPMX19_03440at 835.616 kb on - strand, within MPMX19_03440at 835.616 kb on - strand, within MPMX19_03440at 835.616 kb on - strand, within MPMX19_03440at 835.616 kb on - strand, within MPMX19_03440at 835.616 kb on - strand, within MPMX19_03440at 835.738 kb on + strand, within MPMX19_03440at 835.739 kb on - strand, within MPMX19_03440at 835.739 kb on - strand, within MPMX19_03440at 835.739 kb on - strand, within MPMX19_03440at 835.804 kb on + strandat 835.804 kb on + strandat 835.804 kb on + strandat 835.805 kb on - strandat 835.805 kb on - strandat 835.805 kb on - strandat 835.837 kb on + strandat 835.916 kb on - strandat 835.918 kb on + strandat 835.918 kb on + strandat 835.918 kb on + strandat 835.918 kb on + strandat 835.918 kb on + strandat 835.918 kb on + strandat 835.919 kb on - strandat 835.929 kb on + strandat 835.930 kb on - strandat 835.930 kb on - strandat 836.185 kb on + strand, within MPMX19_03441at 836.185 kb on + strand, within MPMX19_03441at 836.185 kb on + strand, within MPMX19_03441at 836.186 kb on - strand, within MPMX19_03441at 836.186 kb on - strand, within MPMX19_03441at 836.186 kb on - strand, within MPMX19_03441at 836.186 kb on - strand, within MPMX19_03441at 836.186 kb on - strand, within MPMX19_03441at 836.186 kb on - strand, within MPMX19_03441at 836.724 kb on + strand, within MPMX19_03441at 836.724 kb on + strand, within MPMX19_03441at 836.725 kb on - strand, within MPMX19_03441at 836.725 kb on - strand, within MPMX19_03441at 836.725 kb on - strand, within MPMX19_03441at 836.725 kb on - strand, within MPMX19_03441at 836.928 kb on + strand, within MPMX19_03441at 836.928 kb on + strand, within MPMX19_03441at 836.928 kb on + strand, within MPMX19_03441at 836.928 kb on + strand, within MPMX19_03441at 836.928 kb on + strand, within MPMX19_03441at 836.928 kb on + strand, within MPMX19_03441at 836.928 kb on + strand, within MPMX19_03441at 836.929 kb on - strand, within MPMX19_03441at 836.929 kb on - strand, within MPMX19_03441at 836.929 kb on - strand, within MPMX19_03441at 836.929 kb on - strand, within MPMX19_03441at 836.929 kb on - strand, within MPMX19_03441at 836.929 kb on - strand, within MPMX19_03441at 836.929 kb on - strand, within MPMX19_03441at 836.929 kb on - strand, within MPMX19_03441at 836.929 kb on - strand, within MPMX19_03441at 836.929 kb on - strand, within MPMX19_03441at 836.961 kb on + strand, within MPMX19_03441at 836.961 kb on + strand, within MPMX19_03441at 836.962 kb on - strand, within MPMX19_03441at 837.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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834,991 + MPMX19_03440 0.11 +0.1
834,991 + MPMX19_03440 0.11 -1.1
834,991 + MPMX19_03440 0.11 +0.3
834,991 + MPMX19_03440 0.11 -0.9
834,991 + MPMX19_03440 0.11 +0.7
834,991 + MPMX19_03440 0.11 -0.3
834,991 + MPMX19_03440 0.11 +1.7
834,991 + MPMX19_03440 0.11 -0.1
834,991 + MPMX19_03440 0.11 +0.7
834,991 + MPMX19_03440 0.11 -0.9
834,991 + MPMX19_03440 0.11 -0.8
834,991 + MPMX19_03440 0.11 +0.7
834,991 + MPMX19_03440 0.11 +0.6
834,991 + MPMX19_03440 0.11 +1.3
834,991 + MPMX19_03440 0.11 +0.1
834,991 + MPMX19_03440 0.11 -0.2
834,992 - MPMX19_03440 0.11 +0.9
834,992 - MPMX19_03440 0.11 -0.1
834,992 - MPMX19_03440 0.11 -1.2
834,992 - MPMX19_03440 0.11 -0.1
834,992 - MPMX19_03440 0.11 -1.1
834,992 - MPMX19_03440 0.11 +1.0
835,048 + MPMX19_03440 0.17 -0.3
835,048 + MPMX19_03440 0.17 -2.0
835,048 + MPMX19_03440 0.17 +1.1
835,048 + MPMX19_03440 0.17 +2.3
835,048 + MPMX19_03440 0.17 +0.3
835,048 + MPMX19_03440 0.17 -0.6
835,048 + MPMX19_03440 0.17 +0.1
835,049 - MPMX19_03440 0.17 -0.6
835,049 - MPMX19_03440 0.17 +0.7
835,049 - MPMX19_03440 0.17 -0.3
835,049 - MPMX19_03440 0.17 +0.1
835,049 - MPMX19_03440 0.17 +0.7
835,165 + MPMX19_03440 0.29 +0.8
835,165 + MPMX19_03440 0.29 +0.7
835,166 - MPMX19_03440 0.29 -0.5
835,166 - MPMX19_03440 0.29 +0.5
835,166 - MPMX19_03440 0.29 -0.5
835,166 - MPMX19_03440 0.29 -1.8
835,260 + MPMX19_03440 0.39 +0.2
835,261 - MPMX19_03440 0.39 +1.1
835,261 - MPMX19_03440 0.39 -0.9
835,288 + MPMX19_03440 0.42 -1.5
835,288 + MPMX19_03440 0.42 -1.1
835,288 + MPMX19_03440 0.42 -0.6
835,288 + MPMX19_03440 0.42 -0.3
835,288 + MPMX19_03440 0.42 -0.0
835,288 + MPMX19_03440 0.42 +0.9
835,288 + MPMX19_03440 0.42 +1.4
835,289 - MPMX19_03440 0.42 -0.9
835,289 - MPMX19_03440 0.42 -0.8
835,289 - MPMX19_03440 0.42 +0.7
835,289 - MPMX19_03440 0.42 -1.6
835,289 - MPMX19_03440 0.42 -1.8
835,289 - MPMX19_03440 0.42 +1.4
835,289 - MPMX19_03440 0.42 -1.0
835,289 - MPMX19_03440 0.42 -3.5
835,289 - MPMX19_03440 0.42 -0.3
835,289 - MPMX19_03440 0.42 -0.8
835,289 - MPMX19_03440 0.42 +0.1
835,289 - MPMX19_03440 0.42 +0.6
835,342 + MPMX19_03440 0.48 +0.4
835,384 + MPMX19_03440 0.52 +0.4
835,384 + MPMX19_03440 0.52 +3.3
835,384 + MPMX19_03440 0.52 -0.1
835,385 - MPMX19_03440 0.52 +0.2
835,385 - MPMX19_03440 0.52 -0.7
835,385 - MPMX19_03440 0.52 -0.3
835,385 - MPMX19_03440 0.52 +0.2
835,396 + MPMX19_03440 0.53 -0.9
835,396 + MPMX19_03440 0.53 +1.3
835,396 + MPMX19_03440 0.53 -0.4
835,397 - MPMX19_03440 0.54 -0.9
835,397 - MPMX19_03440 0.54 -0.3
835,397 - MPMX19_03440 0.54 +0.1
835,397 - MPMX19_03440 0.54 +1.1
835,487 - MPMX19_03440 0.63 +0.1
835,487 - MPMX19_03440 0.63 -0.1
835,487 - MPMX19_03440 0.63 +0.4
835,487 - MPMX19_03440 0.63 -0.5
835,615 + MPMX19_03440 0.76 -0.5
835,616 - MPMX19_03440 0.77 +0.7
835,616 - MPMX19_03440 0.77 +0.3
835,616 - MPMX19_03440 0.77 +1.1
835,616 - MPMX19_03440 0.77 +0.7
835,616 - MPMX19_03440 0.77 -0.4
835,616 - MPMX19_03440 0.77 -2.7
835,738 + MPMX19_03440 0.89 -0.3
835,739 - MPMX19_03440 0.89 -1.2
835,739 - MPMX19_03440 0.89 +0.7
835,739 - MPMX19_03440 0.89 -0.9
835,804 + -0.1
835,804 + +1.1
835,804 + -1.3
835,805 - +2.1
835,805 - -1.2
835,805 - +2.0
835,837 + +0.5
835,916 - -1.6
835,918 + -0.3
835,918 + -1.1
835,918 + +0.5
835,918 + -1.3
835,918 + -0.8
835,918 + +1.5
835,919 - -0.3
835,929 + -0.6
835,930 - +1.7
835,930 - -0.1
836,185 + MPMX19_03441 0.21 +1.3
836,185 + MPMX19_03441 0.21 +0.7
836,185 + MPMX19_03441 0.21 -0.9
836,186 - MPMX19_03441 0.22 +1.0
836,186 - MPMX19_03441 0.22 -0.6
836,186 - MPMX19_03441 0.22 +0.8
836,186 - MPMX19_03441 0.22 -0.2
836,186 - MPMX19_03441 0.22 -0.3
836,186 - MPMX19_03441 0.22 +0.9
836,724 + MPMX19_03441 0.67 +0.7
836,724 + MPMX19_03441 0.67 -2.4
836,725 - MPMX19_03441 0.67 -0.6
836,725 - MPMX19_03441 0.67 +0.1
836,725 - MPMX19_03441 0.67 +0.3
836,725 - MPMX19_03441 0.67 -0.5
836,928 + MPMX19_03441 0.84 -1.2
836,928 + MPMX19_03441 0.84 -1.5
836,928 + MPMX19_03441 0.84 -0.3
836,928 + MPMX19_03441 0.84 +1.7
836,928 + MPMX19_03441 0.84 +0.1
836,928 + MPMX19_03441 0.84 +0.1
836,928 + MPMX19_03441 0.84 -0.4
836,929 - MPMX19_03441 0.84 -0.6
836,929 - MPMX19_03441 0.84 -1.1
836,929 - MPMX19_03441 0.84 -0.8
836,929 - MPMX19_03441 0.84 -0.3
836,929 - MPMX19_03441 0.84 -0.5
836,929 - MPMX19_03441 0.84 -1.0
836,929 - MPMX19_03441 0.84 -0.5
836,929 - MPMX19_03441 0.84 -1.0
836,929 - MPMX19_03441 0.84 -0.5
836,929 - MPMX19_03441 0.84 -1.1
836,961 + MPMX19_03441 0.87 -0.5
836,961 + MPMX19_03441 0.87 +0.5
836,962 - MPMX19_03441 0.87 +0.5
837,291 - +0.3

Or see this region's nucleotide sequence