Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03410

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03407 and MPMX19_03408 are separated by 113 nucleotidesMPMX19_03408 and MPMX19_03409 are separated by 42 nucleotidesMPMX19_03409 and MPMX19_03410 are separated by 302 nucleotidesMPMX19_03410 and MPMX19_03411 are separated by 152 nucleotidesMPMX19_03411 and MPMX19_03412 are separated by 241 nucleotides MPMX19_03407: MPMX19_03407 - 16S ribosomal RNA, at 795,980 to 797,461 _03407 MPMX19_03408: MPMX19_03408 - tRNA-Ile, at 797,575 to 797,651 _03408 MPMX19_03409: MPMX19_03409 - tRNA-Ala, at 797,694 to 797,769 _03409 MPMX19_03410: MPMX19_03410 - 23S ribosomal RNA, at 798,072 to 800,807 _03410 MPMX19_03411: MPMX19_03411 - 5S ribosomal RNA, at 800,960 to 801,070 _03411 MPMX19_03412: MPMX19_03412 - putative cystine transporter YijE, at 801,312 to 802,247 _03412 Position (kb) 798 799 800 801Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 801.186 kb on + strandat 801.186 kb on + strandat 801.186 kb on + strandat 801.187 kb on - strandat 801.294 kb on + strandat 801.295 kb on - strandat 801.295 kb on - strandat 801.393 kb on + strandat 801.393 kb on + strandat 801.393 kb on + strandat 801.394 kb on - strandat 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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800,914 + -0.9
800,914 + +0.7
800,914 + -1.1
800,914 + -0.7
800,914 + -1.5
800,914 + +2.1
800,914 + +2.7
801,186 + -0.3
801,186 + +0.1
801,186 + -0.3
801,187 - -0.6
801,294 + -0.3
801,295 - -2.0
801,295 - -0.9
801,393 + +0.5
801,393 + +0.4
801,393 + -1.6
801,394 - -1.0
801,508 + MPMX19_03412 0.21 -1.0
801,508 + MPMX19_03412 0.21 -0.3
801,508 + MPMX19_03412 0.21 +0.1
801,508 + MPMX19_03412 0.21 -1.5
801,508 + MPMX19_03412 0.21 +0.1
801,509 - MPMX19_03412 0.21 +0.7
801,509 - MPMX19_03412 0.21 -0.6
801,509 - MPMX19_03412 0.21 -0.6
801,509 - MPMX19_03412 0.21 -0.6
801,509 - MPMX19_03412 0.21 -0.6
801,509 - MPMX19_03412 0.21 +1.7
801,511 + MPMX19_03412 0.21 -1.3
801,511 + MPMX19_03412 0.21 -0.6
801,511 + MPMX19_03412 0.21 -1.0
801,511 + MPMX19_03412 0.21 +1.0
801,511 + MPMX19_03412 0.21 -2.0
801,511 + MPMX19_03412 0.21 -1.6
801,511 + MPMX19_03412 0.21 -0.3
801,511 + MPMX19_03412 0.21 +0.3
801,511 + MPMX19_03412 0.21 -1.2
801,511 + MPMX19_03412 0.21 -0.5
801,511 + MPMX19_03412 0.21 -1.6
801,511 + MPMX19_03412 0.21 +0.1
801,511 + MPMX19_03412 0.21 +0.5
801,511 + MPMX19_03412 0.21 +0.7
801,511 + MPMX19_03412 0.21 +1.0
801,512 - MPMX19_03412 0.21 -1.3
801,512 - MPMX19_03412 0.21 +0.1
801,512 - MPMX19_03412 0.21 -0.3
801,512 - MPMX19_03412 0.21 -0.2
801,512 - MPMX19_03412 0.21 -2.2
801,512 - MPMX19_03412 0.21 -0.3
801,512 - MPMX19_03412 0.21 +0.2
801,512 - MPMX19_03412 0.21 +0.5
801,512 - MPMX19_03412 0.21 -1.6
801,512 - MPMX19_03412 0.21 -0.6
801,512 - MPMX19_03412 0.21 -3.1
801,512 - MPMX19_03412 0.21 -0.5
801,512 - MPMX19_03412 0.21 -0.5
801,512 - MPMX19_03412 0.21 -0.3
801,512 - MPMX19_03412 0.21 -0.2
801,512 - MPMX19_03412 0.21 +1.1
801,512 - MPMX19_03412 0.21 +0.1
801,512 - MPMX19_03412 0.21 +1.2
801,675 + MPMX19_03412 0.39 -1.2
801,675 + MPMX19_03412 0.39 +0.4
801,675 + MPMX19_03412 0.39 -0.8
801,675 + MPMX19_03412 0.39 +0.7
801,675 + MPMX19_03412 0.39 -0.3
801,675 + MPMX19_03412 0.39 +0.7
801,676 - MPMX19_03412 0.39 -0.7
801,676 - MPMX19_03412 0.39 -0.1
801,676 - MPMX19_03412 0.39 +1.1
801,676 - MPMX19_03412 0.39 -1.5
801,676 - MPMX19_03412 0.39 -1.2
801,676 - MPMX19_03412 0.39 +0.1
801,676 - MPMX19_03412 0.39 -1.0
801,676 - MPMX19_03412 0.39 +0.3
801,676 - MPMX19_03412 0.39 -0.9

Or see this region's nucleotide sequence