Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03353

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03352 and MPMX19_03353 are separated by 743 nucleotidesMPMX19_03353 and MPMX19_03354 are separated by 128 nucleotides MPMX19_03352: MPMX19_03352 - hypothetical protein, at 711,758 to 713,119 _03352 MPMX19_03353: MPMX19_03353 - hypothetical protein, at 713,863 to 714,804 _03353 MPMX19_03354: MPMX19_03354 - hypothetical protein, at 714,933 to 716,132 _03354 Position (kb) 713 714 715Strain fitness (log2 ratio) -2 -1 0 1 2at 713.631 kb on - strandat 713.671 kb on - strandat 713.671 kb on - strandat 713.816 kb on + strandat 713.816 kb on + strandat 713.816 kb on + strandat 713.817 kb on - strandat 713.817 kb on - strandat 713.817 kb on - strandat 713.817 kb on - strandat 713.817 kb on - strandat 714.342 kb on - strand, within MPMX19_03353at 714.577 kb on + strand, within MPMX19_03353at 714.577 kb on + strand, within MPMX19_03353at 714.577 kb on + strand, within MPMX19_03353at 714.577 kb on + strand, within MPMX19_03353at 714.578 kb on - strand, within MPMX19_03353at 714.578 kb on - strand, within MPMX19_03353at 714.578 kb on - strand, within MPMX19_03353at 714.578 kb on - strand, within MPMX19_03353at 714.616 kb on + strand, within MPMX19_03353at 714.616 kb on + strand, within MPMX19_03353at 714.617 kb on - strand, within MPMX19_03353at 714.617 kb on - strand, within MPMX19_03353at 714.617 kb on - strand, within MPMX19_03353at 714.739 kb on + strandat 714.740 kb on - strandat 714.742 kb on + strandat 714.742 kb on + strandat 714.743 kb on - strandat 714.743 kb on - strandat 714.743 kb on - strandat 714.743 kb on - strandat 714.743 kb on - strandat 714.895 kb on + strandat 714.895 kb on + strandat 714.895 kb on + strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.896 kb on - strandat 714.897 kb on + strandat 714.897 kb on + strandat 714.897 kb on + strandat 714.897 kb on + strandat 714.897 kb on + strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.898 kb on - strandat 714.913 kb on + strandat 714.913 kb on + strandat 714.914 kb on - strandat 714.914 kb on - strandat 715.134 kb on + strand, within MPMX19_03354at 715.134 kb on + strand, within MPMX19_03354at 715.134 kb on + strand, within MPMX19_03354at 715.134 kb on + strand, within MPMX19_03354at 715.134 kb on + strand, within MPMX19_03354at 715.134 kb on + strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.135 kb on - strand, within MPMX19_03354at 715.187 kb on + strand, within MPMX19_03354at 715.187 kb on + strand, within MPMX19_03354at 715.188 kb on - strand, within MPMX19_03354at 715.188 kb on - strand, within MPMX19_03354at 715.188 kb on - strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.380 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.512 kb on + strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.513 kb on - strand, within MPMX19_03354at 715.611 kb on + strand, within MPMX19_03354at 715.611 kb on + strand, within MPMX19_03354at 715.611 kb on + strand, within MPMX19_03354at 715.650 kb on + strand, within MPMX19_03354at 715.650 kb on + strand, within MPMX19_03354at 715.650 kb on + strand, within MPMX19_03354at 715.651 kb on - strand, within MPMX19_03354at 715.651 kb on - strand, within MPMX19_03354

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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713,631 - +0.1
713,671 - +0.8
713,671 - -0.8
713,816 + +2.3
713,816 + -0.6
713,816 + -0.6
713,817 - -0.6
713,817 - -1.5
713,817 - +0.3
713,817 - +0.5
713,817 - +1.7
714,342 - MPMX19_03353 0.51 +0.4
714,577 + MPMX19_03353 0.76 -0.5
714,577 + MPMX19_03353 0.76 +0.7
714,577 + MPMX19_03353 0.76 -1.5
714,577 + MPMX19_03353 0.76 -0.3
714,578 - MPMX19_03353 0.76 +0.1
714,578 - MPMX19_03353 0.76 -0.3
714,578 - MPMX19_03353 0.76 -0.6
714,578 - MPMX19_03353 0.76 -1.3
714,616 + MPMX19_03353 0.80 -1.6
714,616 + MPMX19_03353 0.80 +0.1
714,617 - MPMX19_03353 0.80 -0.3
714,617 - MPMX19_03353 0.80 -0.3
714,617 - MPMX19_03353 0.80 -2.6
714,739 + -1.3
714,740 - -0.6
714,742 + +0.4
714,742 + -0.5
714,743 - -0.5
714,743 - -0.5
714,743 - +1.0
714,743 - +0.5
714,743 - -0.2
714,895 + +1.0
714,895 + +1.7
714,895 + +0.7
714,896 - -0.0
714,896 - +1.7
714,896 - -1.0
714,896 - -0.6
714,896 - +0.5
714,896 - -0.6
714,896 - -0.3
714,896 - +1.1
714,896 - -1.1
714,897 + -1.2
714,897 + -0.5
714,897 + -0.3
714,897 + -1.1
714,897 + -0.9
714,898 - -0.6
714,898 - -1.5
714,898 - -0.1
714,898 - -0.9
714,898 - -0.1
714,898 - -2.5
714,898 - -1.5
714,913 + -0.9
714,913 + +0.6
714,914 - -0.9
714,914 - -1.3
715,134 + MPMX19_03354 0.17 +0.1
715,134 + MPMX19_03354 0.17 -0.0
715,134 + MPMX19_03354 0.17 +1.1
715,134 + MPMX19_03354 0.17 -1.6
715,134 + MPMX19_03354 0.17 -0.3
715,134 + MPMX19_03354 0.17 -0.2
715,135 - MPMX19_03354 0.17 +0.6
715,135 - MPMX19_03354 0.17 +1.1
715,135 - MPMX19_03354 0.17 -1.1
715,135 - MPMX19_03354 0.17 -1.1
715,135 - MPMX19_03354 0.17 -1.6
715,135 - MPMX19_03354 0.17 +0.7
715,187 + MPMX19_03354 0.21 -2.0
715,187 + MPMX19_03354 0.21 -1.5
715,188 - MPMX19_03354 0.21 -1.6
715,188 - MPMX19_03354 0.21 +0.8
715,188 - MPMX19_03354 0.21 -0.8
715,380 + MPMX19_03354 0.37 +0.5
715,380 + MPMX19_03354 0.37 -1.8
715,380 + MPMX19_03354 0.37 -0.6
715,380 + MPMX19_03354 0.37 +0.1
715,380 + MPMX19_03354 0.37 +0.1
715,380 + MPMX19_03354 0.37 +1.1
715,380 + MPMX19_03354 0.37 -1.9
715,380 + MPMX19_03354 0.37 -0.6
715,512 + MPMX19_03354 0.48 +0.2
715,512 + MPMX19_03354 0.48 -1.1
715,512 + MPMX19_03354 0.48 -1.6
715,512 + MPMX19_03354 0.48 -0.3
715,512 + MPMX19_03354 0.48 -2.3
715,512 + MPMX19_03354 0.48 -0.6
715,512 + MPMX19_03354 0.48 +1.7
715,512 + MPMX19_03354 0.48 -1.1
715,513 - MPMX19_03354 0.48 -1.1
715,513 - MPMX19_03354 0.48 -1.3
715,513 - MPMX19_03354 0.48 -1.0
715,513 - MPMX19_03354 0.48 +0.6
715,513 - MPMX19_03354 0.48 +1.7
715,513 - MPMX19_03354 0.48 -0.1
715,513 - MPMX19_03354 0.48 -0.5
715,611 + MPMX19_03354 0.56 -0.6
715,611 + MPMX19_03354 0.56 -1.9
715,611 + MPMX19_03354 0.56 -0.5
715,650 + MPMX19_03354 0.60 +0.7
715,650 + MPMX19_03354 0.60 -0.6
715,650 + MPMX19_03354 0.60 -0.3
715,651 - MPMX19_03354 0.60 -0.5
715,651 - MPMX19_03354 0.60 -1.1

Or see this region's nucleotide sequence