Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03342 and MPMX19_03343 overlap by 4 nucleotides MPMX19_03343 and MPMX19_03344 are separated by 49 nucleotides MPMX19_03344 and MPMX19_03345 are separated by 123 nucleotides
MPMX19_03342: MPMX19_03342 - hypothetical protein, at 700,269 to 700,505
_03342
MPMX19_03343: MPMX19_03343 - hypothetical protein, at 700,502 to 701,356
_03343
MPMX19_03344: MPMX19_03344 - 3-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase, at 701,406 to 703,115
_03344
MPMX19_03345: MPMX19_03345 - Phenylacetaldehyde dehydrogenase, at 703,239 to 704,654
_03345
Position (kb) 701
702
703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 700.775 kb on + strand, within MPMX19_03343 at 700.775 kb on + strand, within MPMX19_03343 at 700.775 kb on + strand, within MPMX19_03343 at 700.775 kb on + strand, within MPMX19_03343 at 700.775 kb on + strand, within MPMX19_03343 at 700.775 kb on + strand, within MPMX19_03343 at 700.775 kb on + strand, within MPMX19_03343 at 700.775 kb on + strand, within MPMX19_03343 at 700.775 kb on + strand, within MPMX19_03343 at 700.775 kb on + strand, within MPMX19_03343 at 700.775 kb on + strand, within MPMX19_03343 at 700.776 kb on - strand, within MPMX19_03343 at 700.776 kb on - strand, within MPMX19_03343 at 700.776 kb on - strand, within MPMX19_03343 at 700.776 kb on - strand, within MPMX19_03343 at 700.776 kb on - strand, within MPMX19_03343 at 700.776 kb on - strand, within MPMX19_03343 at 700.777 kb on + strand, within MPMX19_03343 at 700.777 kb on + strand, within MPMX19_03343 at 700.777 kb on + strand, within MPMX19_03343 at 700.777 kb on + strand, within MPMX19_03343 at 700.777 kb on + strand, within MPMX19_03343 at 700.777 kb on + strand, within MPMX19_03343 at 700.777 kb on + strand, within MPMX19_03343 at 700.778 kb on - strand, within MPMX19_03343 at 700.778 kb on - strand, within MPMX19_03343 at 700.778 kb on - strand, within MPMX19_03343 at 701.053 kb on + strand, within MPMX19_03343 at 701.053 kb on + strand, within MPMX19_03343 at 701.053 kb on + strand, within MPMX19_03343 at 701.053 kb on + strand, within MPMX19_03343 at 701.053 kb on + strand, within MPMX19_03343 at 701.053 kb on + strand, within MPMX19_03343 at 701.053 kb on + strand, within MPMX19_03343 at 701.053 kb on + strand, within MPMX19_03343 at 701.054 kb on - strand, within MPMX19_03343 at 701.054 kb on - strand, within MPMX19_03343 at 701.054 kb on - strand, within MPMX19_03343 at 701.054 kb on - strand, within MPMX19_03343 at 701.054 kb on - strand, within MPMX19_03343 at 701.309 kb on + strand at 701.309 kb on + strand at 701.309 kb on + strand at 701.309 kb on + strand at 701.309 kb on + strand at 701.309 kb on + strand at 701.310 kb on - strand at 701.310 kb on - strand at 701.310 kb on - strand at 701.310 kb on - strand at 701.310 kb on - strand at 701.310 kb on - strand at 701.310 kb on - strand at 701.310 kb on - strand at 701.352 kb on + strand at 701.352 kb on + strand at 701.352 kb on + strand at 701.352 kb on + strand at 701.353 kb on - strand at 701.353 kb on - strand at 701.518 kb on + strand at 701.519 kb on - strand at 701.519 kb on - strand at 701.519 kb on - strand at 701.519 kb on - strand at 701.519 kb on - strand at 701.519 kb on - strand at 701.519 kb on - strand at 701.533 kb on + strand at 701.533 kb on + strand at 701.533 kb on + strand at 701.534 kb on - strand at 701.534 kb on - strand at 701.534 kb on - strand at 701.534 kb on - strand at 701.629 kb on + strand, within MPMX19_03344 at 701.629 kb on + strand, within MPMX19_03344 at 701.630 kb on - strand, within MPMX19_03344 at 701.683 kb on + strand, within MPMX19_03344 at 701.683 kb on + strand, within MPMX19_03344 at 701.683 kb on + strand, within MPMX19_03344 at 701.683 kb on - strand, within MPMX19_03344 at 701.684 kb on - strand, within MPMX19_03344 at 701.684 kb on - strand, within MPMX19_03344 at 701.684 kb on - strand, within MPMX19_03344 at 701.684 kb on - strand, within MPMX19_03344 at 701.684 kb on - strand, within MPMX19_03344 at 701.684 kb on - strand, within MPMX19_03344 at 701.684 kb on - strand, within MPMX19_03344 at 701.710 kb on + strand, within MPMX19_03344 at 701.710 kb on + strand, within MPMX19_03344 at 701.710 kb on + strand, within MPMX19_03344 at 701.711 kb on - strand, within MPMX19_03344 at 701.711 kb on - strand, within MPMX19_03344 at 701.711 kb on - strand, within MPMX19_03344 at 701.711 kb on - strand, within MPMX19_03344 at 701.711 kb on - strand, within MPMX19_03344 at 701.711 kb on - strand, within MPMX19_03344 at 701.711 kb on - strand, within MPMX19_03344 at 701.711 kb on - strand, within MPMX19_03344 at 701.711 kb on - strand, within MPMX19_03344 at 701.767 kb on + strand, within MPMX19_03344 at 701.767 kb on + strand, within MPMX19_03344 at 701.768 kb on - strand, within MPMX19_03344 at 701.768 kb on - strand, within MPMX19_03344 at 701.768 kb on - strand, within MPMX19_03344 at 701.857 kb on + strand, within MPMX19_03344 at 701.858 kb on - strand, within MPMX19_03344 at 701.875 kb on + strand, within MPMX19_03344 at 701.876 kb on - strand, within MPMX19_03344 at 702.155 kb on - strand, within MPMX19_03344 at 702.155 kb on - strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.340 kb on + strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.341 kb on - strand, within MPMX19_03344 at 702.703 kb on + strand, within MPMX19_03344 at 702.703 kb on + strand, within MPMX19_03344 at 702.703 kb on + strand, within MPMX19_03344 at 702.703 kb on + strand, within MPMX19_03344 at 702.703 kb on + strand, within MPMX19_03344 at 702.703 kb on + strand, within MPMX19_03344 at 702.704 kb on - strand, within MPMX19_03344 at 702.704 kb on - strand, within MPMX19_03344 at 702.766 kb on + strand, within MPMX19_03344 at 702.766 kb on + strand, within MPMX19_03344 at 702.766 kb on + strand, within MPMX19_03344 at 702.766 kb on + strand, within MPMX19_03344 at 702.766 kb on + strand, within MPMX19_03344 at 702.766 kb on + strand, within MPMX19_03344 at 702.766 kb on + strand, within MPMX19_03344 at 702.766 kb on + strand, within MPMX19_03344 at 702.766 kb on + strand, within MPMX19_03344 at 702.767 kb on - strand, within MPMX19_03344 at 702.767 kb on - strand, within MPMX19_03344 at 702.767 kb on - strand, within MPMX19_03344 at 702.955 kb on + strand at 702.956 kb on - strand at 702.956 kb on - strand at 702.956 kb on - strand at 702.956 kb on - strand at 702.956 kb on - strand at 702.956 kb on - strand at 702.956 kb on - strand at 702.956 kb on - strand at 702.956 kb on - strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.081 kb on + strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.082 kb on - strand at 703.110 kb on - strand at 703.110 kb on - strand at 703.141 kb on + strand at 703.141 kb on + strand at 703.142 kb on - strand at 703.142 kb on - strand at 703.142 kb on - strand at 703.142 kb on - strand at 703.197 kb on + strand at 703.240 kb on + strand at 703.240 kb on + strand at 703.420 kb on + strand, within MPMX19_03345 at 703.421 kb on - strand, within MPMX19_03345 at 703.465 kb on + strand, within MPMX19_03345 at 703.465 kb on + strand, within MPMX19_03345 at 703.687 kb on + strand, within MPMX19_03345 at 703.687 kb on + strand, within MPMX19_03345 at 703.688 kb on - strand, within MPMX19_03345 at 703.688 kb on - strand, within MPMX19_03345 at 703.688 kb on - strand, within MPMX19_03345 at 703.688 kb on - strand, within MPMX19_03345 at 703.688 kb on - strand, within MPMX19_03345 at 703.792 kb on + strand, within MPMX19_03345 at 703.792 kb on + strand, within MPMX19_03345 at 703.792 kb on + strand, within MPMX19_03345 at 703.793 kb on - strand, within MPMX19_03345 at 703.793 kb on - strand, within MPMX19_03345 at 703.793 kb on - strand, within MPMX19_03345 at 703.810 kb on + strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 700,775 + MPMX19_03343 0.32 -1.3 700,775 + MPMX19_03343 0.32 +0.5 700,775 + MPMX19_03343 0.32 -1.1 700,775 + MPMX19_03343 0.32 -0.9 700,775 + MPMX19_03343 0.32 -0.3 700,775 + MPMX19_03343 0.32 -0.5 700,775 + MPMX19_03343 0.32 +1.3 700,775 + MPMX19_03343 0.32 -0.6 700,775 + MPMX19_03343 0.32 -0.3 700,775 + MPMX19_03343 0.32 -0.9 700,775 + MPMX19_03343 0.32 +0.5 700,776 - MPMX19_03343 0.32 -1.1 700,776 - MPMX19_03343 0.32 -0.3 700,776 - MPMX19_03343 0.32 +0.3 700,776 - MPMX19_03343 0.32 -0.6 700,776 - MPMX19_03343 0.32 -0.6 700,776 - MPMX19_03343 0.32 -0.6 700,777 + MPMX19_03343 0.32 -0.3 700,777 + MPMX19_03343 0.32 +0.7 700,777 + MPMX19_03343 0.32 -0.9 700,777 + MPMX19_03343 0.32 +1.7 700,777 + MPMX19_03343 0.32 +0.7 700,777 + MPMX19_03343 0.32 -1.1 700,777 + MPMX19_03343 0.32 -0.5 700,778 - MPMX19_03343 0.32 -2.2 700,778 - MPMX19_03343 0.32 -0.5 700,778 - MPMX19_03343 0.32 -1.2 701,053 + MPMX19_03343 0.64 -0.6 701,053 + MPMX19_03343 0.64 -0.4 701,053 + MPMX19_03343 0.64 -1.6 701,053 + MPMX19_03343 0.64 -0.2 701,053 + MPMX19_03343 0.64 +1.7 701,053 + MPMX19_03343 0.64 +0.4 701,053 + MPMX19_03343 0.64 +0.3 701,053 + MPMX19_03343 0.64 +1.1 701,054 - MPMX19_03343 0.65 -0.6 701,054 - MPMX19_03343 0.65 -3.1 701,054 - MPMX19_03343 0.65 -2.0 701,054 - MPMX19_03343 0.65 +1.1 701,054 - MPMX19_03343 0.65 -0.5 701,309 + -1.6 701,309 + +1.0 701,309 + -1.2 701,309 + -0.3 701,309 + -1.0 701,309 + -1.1 701,310 - +0.1 701,310 - -0.4 701,310 - +0.4 701,310 - +0.1 701,310 - -0.3 701,310 - -0.9 701,310 - -1.2 701,310 - +0.7 701,352 + +0.1 701,352 + -0.4 701,352 + -0.9 701,352 + +1.3 701,353 - -0.9 701,353 - -1.1 701,518 + +1.3 701,519 - -1.3 701,519 - -1.1 701,519 - -1.0 701,519 - -0.9 701,519 - -1.1 701,519 - -0.6 701,519 - +0.1 701,533 + +0.1 701,533 + +0.1 701,533 + +1.0 701,534 - -0.9 701,534 - +0.4 701,534 - -0.9 701,534 - -1.5 701,629 + MPMX19_03344 0.13 +1.0 701,629 + MPMX19_03344 0.13 -0.6 701,630 - MPMX19_03344 0.13 +1.3 701,683 + MPMX19_03344 0.16 -0.1 701,683 + MPMX19_03344 0.16 +0.4 701,683 + MPMX19_03344 0.16 -0.1 701,683 - MPMX19_03344 0.16 +0.1 701,684 - MPMX19_03344 0.16 -0.9 701,684 - MPMX19_03344 0.16 -1.6 701,684 - MPMX19_03344 0.16 +3.3 701,684 - MPMX19_03344 0.16 -0.6 701,684 - MPMX19_03344 0.16 +1.0 701,684 - MPMX19_03344 0.16 -0.9 701,684 - MPMX19_03344 0.16 +0.1 701,710 + MPMX19_03344 0.18 -1.9 701,710 + MPMX19_03344 0.18 +0.7 701,710 + MPMX19_03344 0.18 -1.3 701,711 - MPMX19_03344 0.18 -1.0 701,711 - MPMX19_03344 0.18 -0.6 701,711 - MPMX19_03344 0.18 +0.5 701,711 - MPMX19_03344 0.18 -2.4 701,711 - MPMX19_03344 0.18 -1.9 701,711 - MPMX19_03344 0.18 -0.8 701,711 - MPMX19_03344 0.18 +0.1 701,711 - MPMX19_03344 0.18 -1.5 701,711 - MPMX19_03344 0.18 -0.3 701,767 + MPMX19_03344 0.21 +0.4 701,767 + MPMX19_03344 0.21 -2.2 701,768 - MPMX19_03344 0.21 +0.4 701,768 - MPMX19_03344 0.21 -1.1 701,768 - MPMX19_03344 0.21 +0.7 701,857 + MPMX19_03344 0.26 -1.6 701,858 - MPMX19_03344 0.26 +0.1 701,875 + MPMX19_03344 0.27 -1.2 701,876 - MPMX19_03344 0.27 -0.3 702,155 - MPMX19_03344 0.44 -1.6 702,155 - MPMX19_03344 0.44 -0.0 702,340 + MPMX19_03344 0.55 -0.5 702,340 + MPMX19_03344 0.55 -2.0 702,340 + MPMX19_03344 0.55 -0.3 702,340 + MPMX19_03344 0.55 -0.0 702,340 + MPMX19_03344 0.55 -0.6 702,340 + MPMX19_03344 0.55 +0.7 702,340 + MPMX19_03344 0.55 +1.7 702,340 + MPMX19_03344 0.55 +0.1 702,340 + MPMX19_03344 0.55 +0.1 702,340 + MPMX19_03344 0.55 -1.4 702,340 + MPMX19_03344 0.55 +0.1 702,341 - MPMX19_03344 0.55 -1.1 702,341 - MPMX19_03344 0.55 +0.4 702,341 - MPMX19_03344 0.55 +0.3 702,341 - MPMX19_03344 0.55 -0.4 702,341 - MPMX19_03344 0.55 -0.3 702,341 - MPMX19_03344 0.55 -1.5 702,341 - MPMX19_03344 0.55 -0.6 702,341 - MPMX19_03344 0.55 +0.9 702,341 - MPMX19_03344 0.55 -2.1 702,341 - MPMX19_03344 0.55 +0.3 702,341 - MPMX19_03344 0.55 +0.7 702,341 - MPMX19_03344 0.55 -1.2 702,341 - MPMX19_03344 0.55 -0.9 702,341 - MPMX19_03344 0.55 +0.1 702,703 + MPMX19_03344 0.76 +0.7 702,703 + MPMX19_03344 0.76 -0.9 702,703 + MPMX19_03344 0.76 +0.7 702,703 + MPMX19_03344 0.76 -0.3 702,703 + MPMX19_03344 0.76 +0.0 702,703 + MPMX19_03344 0.76 +0.9 702,704 - MPMX19_03344 0.76 +0.0 702,704 - MPMX19_03344 0.76 -1.8 702,766 + MPMX19_03344 0.80 -0.3 702,766 + MPMX19_03344 0.80 -0.3 702,766 + MPMX19_03344 0.80 -1.9 702,766 + MPMX19_03344 0.80 -0.5 702,766 + MPMX19_03344 0.80 +0.4 702,766 + MPMX19_03344 0.80 +1.1 702,766 + MPMX19_03344 0.80 -0.1 702,766 + MPMX19_03344 0.80 -2.2 702,766 + MPMX19_03344 0.80 +1.1 702,767 - MPMX19_03344 0.80 +0.2 702,767 - MPMX19_03344 0.80 +0.7 702,767 - MPMX19_03344 0.80 +2.3 702,955 + -0.6 702,956 - +1.1 702,956 - -0.4 702,956 - +0.4 702,956 - -1.3 702,956 - -1.1 702,956 - -0.3 702,956 - -0.1 702,956 - -0.3 702,956 - -0.5 703,081 + -0.4 703,081 + -0.9 703,081 + -0.9 703,081 + -1.6 703,081 + -1.2 703,081 + -2.7 703,081 + -0.3 703,081 + -1.2 703,081 + -1.4 703,081 + -0.6 703,081 + +0.1 703,081 + +0.6 703,081 + +1.7 703,081 + +1.1 703,081 + +1.7 703,081 + +0.7 703,081 + -1.8 703,081 + -2.0 703,082 - +0.1 703,082 - -2.7 703,082 - +0.4 703,082 - -0.8 703,082 - +0.4 703,082 - -0.9 703,082 - -1.9 703,082 - +0.7 703,082 - -0.3 703,082 - -2.3 703,082 - -0.4 703,082 - +0.1 703,082 - -2.1 703,082 - -1.4 703,110 - -1.1 703,110 - -1.5 703,141 + -0.3 703,141 + +0.7 703,142 - +1.1 703,142 - -1.9 703,142 - +1.1 703,142 - +0.1 703,197 + +0.1 703,240 + -0.9 703,240 + -2.5 703,420 + MPMX19_03345 0.13 -0.5 703,421 - MPMX19_03345 0.13 -0.3 703,465 + MPMX19_03345 0.16 -0.6 703,465 + MPMX19_03345 0.16 -0.8 703,687 + MPMX19_03345 0.32 -0.8 703,687 + MPMX19_03345 0.32 +0.1 703,688 - MPMX19_03345 0.32 -1.1 703,688 - MPMX19_03345 0.32 -1.5 703,688 - MPMX19_03345 0.32 -2.0 703,688 - MPMX19_03345 0.32 +1.0 703,688 - MPMX19_03345 0.32 -0.4 703,792 + MPMX19_03345 0.39 -0.9 703,792 + MPMX19_03345 0.39 -0.1 703,792 + MPMX19_03345 0.39 -1.4 703,793 - MPMX19_03345 0.39 -0.9 703,793 - MPMX19_03345 0.39 -0.9 703,793 - MPMX19_03345 0.39 +1.1 703,810 + MPMX19_03345 0.40 -1.0 703,811 - MPMX19_03345 0.40 +0.3 703,811 - MPMX19_03345 0.40 -1.2 703,811 - MPMX19_03345 0.40 -0.3 703,811 - MPMX19_03345 0.40 +0.5 703,811 - MPMX19_03345 0.40 +0.1
Or see this region's nucleotide sequence