Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03247 and MPMX19_03248 are separated by 88 nucleotides MPMX19_03248 and MPMX19_03249 are separated by 6 nucleotides
MPMX19_03247: MPMX19_03247 - putative RNA polymerase sigma factor FecI, at 587,695 to 588,228
_03247
MPMX19_03248: MPMX19_03248 - 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component, at 588,317 to 589,402
_03248
MPMX19_03249: MPMX19_03249 - Carnitine monooxygenase oxygenase subunit, at 589,409 to 590,644
_03249
Position (kb) 588
589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 587.334 kb on + strand at 587.334 kb on + strand at 587.334 kb on + strand at 587.334 kb on + strand at 587.334 kb on + strand at 587.335 kb on - strand at 587.492 kb on + strand at 587.772 kb on - strand, within MPMX19_03247 at 587.881 kb on + strand, within MPMX19_03247 at 587.881 kb on + strand, within MPMX19_03247 at 587.881 kb on + strand, within MPMX19_03247 at 587.882 kb on - strand, within MPMX19_03247 at 587.882 kb on - strand, within MPMX19_03247 at 587.882 kb on - strand, within MPMX19_03247 at 587.882 kb on - strand, within MPMX19_03247 at 587.901 kb on + strand, within MPMX19_03247 at 587.921 kb on - strand, within MPMX19_03247 at 587.921 kb on - strand, within MPMX19_03247 at 587.978 kb on + strand, within MPMX19_03247 at 588.011 kb on + strand, within MPMX19_03247 at 588.012 kb on - strand, within MPMX19_03247 at 588.012 kb on - strand, within MPMX19_03247 at 588.012 kb on - strand, within MPMX19_03247 at 588.079 kb on + strand, within MPMX19_03247 at 588.079 kb on + strand, within MPMX19_03247 at 588.080 kb on - strand, within MPMX19_03247 at 588.080 kb on - strand, within MPMX19_03247 at 588.296 kb on + strand at 588.297 kb on - strand at 588.297 kb on - strand at 588.297 kb on - strand at 588.302 kb on + strand at 588.302 kb on + strand at 588.302 kb on + strand at 588.302 kb on + strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.303 kb on - strand at 588.369 kb on + strand at 588.369 kb on + strand at 588.369 kb on + strand at 588.369 kb on + strand at 588.369 kb on + strand at 588.369 kb on + strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.370 kb on - strand at 588.660 kb on + strand, within MPMX19_03248 at 588.660 kb on + strand, within MPMX19_03248 at 588.661 kb on - strand, within MPMX19_03248 at 588.735 kb on + strand, within MPMX19_03248 at 588.735 kb on + strand, within MPMX19_03248 at 588.735 kb on + strand, within MPMX19_03248 at 588.736 kb on - strand, within MPMX19_03248 at 588.736 kb on - strand, within MPMX19_03248 at 588.753 kb on + strand, within MPMX19_03248 at 588.753 kb on + strand, within MPMX19_03248 at 588.753 kb on + strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.754 kb on - strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.969 kb on + strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 588.970 kb on - strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.023 kb on + strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.024 kb on - strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.194 kb on + strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.195 kb on - strand, within MPMX19_03248 at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.410 kb on + strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.411 kb on - strand at 589.464 kb on + strand at 589.464 kb on + strand at 589.464 kb on + strand at 589.464 kb on + strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.465 kb on - strand at 589.524 kb on + strand at 589.524 kb on + strand at 589.524 kb on + strand at 589.525 kb on - strand at 589.525 kb on - strand at 589.620 kb on + strand, within MPMX19_03249 at 589.620 kb on + strand, within MPMX19_03249 at 589.621 kb on - strand, within MPMX19_03249 at 589.667 kb on + strand, within MPMX19_03249 at 589.667 kb on + strand, within MPMX19_03249 at 589.668 kb on - strand, within MPMX19_03249 at 589.668 kb on - strand, within MPMX19_03249 at 589.750 kb on - strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.833 kb on + strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 589.834 kb on - strand, within MPMX19_03249 at 590.040 kb on + strand, within MPMX19_03249 at 590.040 kb on + strand, within MPMX19_03249 at 590.040 kb on + strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.041 kb on - strand, within MPMX19_03249 at 590.142 kb on + strand, within MPMX19_03249 at 590.142 kb on + strand, within MPMX19_03249 at 590.143 kb on - strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.202 kb on + strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.203 kb on - strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.310 kb on + strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249 at 590.311 kb on - strand, within MPMX19_03249
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 587,334 + -1.1 587,334 + -0.6 587,334 + +0.1 587,334 + -1.6 587,334 + -0.9 587,335 - -0.9 587,492 + -1.1 587,772 - MPMX19_03247 0.14 -1.0 587,881 + MPMX19_03247 0.35 -0.1 587,881 + MPMX19_03247 0.35 +0.0 587,881 + MPMX19_03247 0.35 +0.2 587,882 - MPMX19_03247 0.35 -1.3 587,882 - MPMX19_03247 0.35 +0.1 587,882 - MPMX19_03247 0.35 -1.6 587,882 - MPMX19_03247 0.35 +0.0 587,901 + MPMX19_03247 0.39 -0.5 587,921 - MPMX19_03247 0.42 -0.3 587,921 - MPMX19_03247 0.42 -0.5 587,978 + MPMX19_03247 0.53 -0.3 588,011 + MPMX19_03247 0.59 -0.9 588,012 - MPMX19_03247 0.59 -3.0 588,012 - MPMX19_03247 0.59 -0.6 588,012 - MPMX19_03247 0.59 +0.9 588,079 + MPMX19_03247 0.72 -0.1 588,079 + MPMX19_03247 0.72 -0.3 588,080 - MPMX19_03247 0.72 +1.2 588,080 - MPMX19_03247 0.72 -0.6 588,296 + -0.3 588,297 - +2.3 588,297 - +0.1 588,297 - -0.7 588,302 + +0.7 588,302 + +0.1 588,302 + +0.1 588,302 + -2.6 588,303 - -0.9 588,303 - +0.3 588,303 - -1.3 588,303 - +0.9 588,303 - -0.1 588,303 - -2.1 588,303 - -0.3 588,369 + +0.9 588,369 + -0.9 588,369 + -0.2 588,369 + +0.2 588,369 + -1.3 588,369 + +0.0 588,370 - -1.1 588,370 - -0.9 588,370 - -1.5 588,370 - -0.5 588,370 - -1.9 588,370 - -0.3 588,370 - +0.3 588,660 + MPMX19_03248 0.32 -1.1 588,660 + MPMX19_03248 0.32 +1.7 588,661 - MPMX19_03248 0.32 -0.9 588,735 + MPMX19_03248 0.38 -2.2 588,735 + MPMX19_03248 0.38 -0.9 588,735 + MPMX19_03248 0.38 +0.1 588,736 - MPMX19_03248 0.39 -0.3 588,736 - MPMX19_03248 0.39 -0.5 588,753 + MPMX19_03248 0.40 -0.6 588,753 + MPMX19_03248 0.40 -2.2 588,753 + MPMX19_03248 0.40 -0.7 588,754 - MPMX19_03248 0.40 -0.3 588,754 - MPMX19_03248 0.40 -0.3 588,754 - MPMX19_03248 0.40 +0.1 588,754 - MPMX19_03248 0.40 +0.9 588,754 - MPMX19_03248 0.40 -1.3 588,754 - MPMX19_03248 0.40 -0.1 588,969 + MPMX19_03248 0.60 -0.3 588,969 + MPMX19_03248 0.60 -0.0 588,969 + MPMX19_03248 0.60 -1.1 588,969 + MPMX19_03248 0.60 -1.4 588,969 + MPMX19_03248 0.60 +0.1 588,969 + MPMX19_03248 0.60 +0.2 588,969 + MPMX19_03248 0.60 -1.5 588,969 + MPMX19_03248 0.60 -0.3 588,969 + MPMX19_03248 0.60 +0.4 588,969 + MPMX19_03248 0.60 -0.6 588,969 + MPMX19_03248 0.60 -1.9 588,969 + MPMX19_03248 0.60 -1.3 588,969 + MPMX19_03248 0.60 -1.3 588,970 - MPMX19_03248 0.60 -1.9 588,970 - MPMX19_03248 0.60 -0.6 588,970 - MPMX19_03248 0.60 -2.3 588,970 - MPMX19_03248 0.60 -2.6 588,970 - MPMX19_03248 0.60 -0.6 588,970 - MPMX19_03248 0.60 +0.2 588,970 - MPMX19_03248 0.60 -1.1 588,970 - MPMX19_03248 0.60 -0.1 588,970 - MPMX19_03248 0.60 -0.2 588,970 - MPMX19_03248 0.60 -1.1 588,970 - MPMX19_03248 0.60 -0.1 588,970 - MPMX19_03248 0.60 -1.3 589,023 + MPMX19_03248 0.65 -0.5 589,023 + MPMX19_03248 0.65 -0.9 589,023 + MPMX19_03248 0.65 -2.6 589,023 + MPMX19_03248 0.65 -1.8 589,023 + MPMX19_03248 0.65 +0.1 589,023 + MPMX19_03248 0.65 -2.0 589,023 + MPMX19_03248 0.65 -0.1 589,023 + MPMX19_03248 0.65 -1.1 589,023 + MPMX19_03248 0.65 -0.6 589,023 + MPMX19_03248 0.65 +1.4 589,023 + MPMX19_03248 0.65 -1.0 589,023 + MPMX19_03248 0.65 -0.6 589,024 - MPMX19_03248 0.65 -1.1 589,024 - MPMX19_03248 0.65 -0.3 589,024 - MPMX19_03248 0.65 +0.7 589,024 - MPMX19_03248 0.65 -0.8 589,024 - MPMX19_03248 0.65 -1.3 589,024 - MPMX19_03248 0.65 -0.1 589,024 - MPMX19_03248 0.65 +1.1 589,024 - MPMX19_03248 0.65 +0.1 589,024 - MPMX19_03248 0.65 +1.7 589,024 - MPMX19_03248 0.65 -0.6 589,024 - MPMX19_03248 0.65 -0.3 589,024 - MPMX19_03248 0.65 -0.1 589,194 + MPMX19_03248 0.81 -0.6 589,194 + MPMX19_03248 0.81 -0.8 589,194 + MPMX19_03248 0.81 +0.3 589,194 + MPMX19_03248 0.81 -1.2 589,194 + MPMX19_03248 0.81 +0.1 589,194 + MPMX19_03248 0.81 +0.1 589,194 + MPMX19_03248 0.81 -0.6 589,194 + MPMX19_03248 0.81 -1.1 589,194 + MPMX19_03248 0.81 -0.6 589,194 + MPMX19_03248 0.81 -2.1 589,194 + MPMX19_03248 0.81 +0.1 589,194 + MPMX19_03248 0.81 +0.1 589,194 + MPMX19_03248 0.81 -0.6 589,194 + MPMX19_03248 0.81 +0.1 589,194 + MPMX19_03248 0.81 -0.9 589,195 - MPMX19_03248 0.81 -1.5 589,195 - MPMX19_03248 0.81 +3.3 589,195 - MPMX19_03248 0.81 -2.9 589,195 - MPMX19_03248 0.81 -2.6 589,195 - MPMX19_03248 0.81 -1.8 589,410 + -1.1 589,410 + +0.1 589,410 + -0.4 589,410 + +0.1 589,410 + +0.1 589,410 + -0.3 589,410 + -0.3 589,410 + +1.1 589,410 + -0.6 589,410 + -0.1 589,411 - -0.3 589,411 - -3.0 589,411 - +0.1 589,411 - -2.1 589,411 - -1.1 589,411 - -2.0 589,464 + -0.9 589,464 + +1.1 589,464 + -0.2 589,464 + -0.1 589,465 - -1.5 589,465 - -1.3 589,465 - -0.3 589,465 - -0.3 589,465 - +0.1 589,524 + +0.4 589,524 + -0.3 589,524 + -1.1 589,525 - -0.6 589,525 - +0.7 589,620 + MPMX19_03249 0.17 -0.1 589,620 + MPMX19_03249 0.17 -3.5 589,621 - MPMX19_03249 0.17 +0.5 589,667 + MPMX19_03249 0.21 +0.4 589,667 + MPMX19_03249 0.21 +0.4 589,668 - MPMX19_03249 0.21 +0.1 589,668 - MPMX19_03249 0.21 -0.9 589,750 - MPMX19_03249 0.28 -0.6 589,833 + MPMX19_03249 0.34 -1.8 589,833 + MPMX19_03249 0.34 +0.1 589,833 + MPMX19_03249 0.34 -0.6 589,833 + MPMX19_03249 0.34 +1.2 589,833 + MPMX19_03249 0.34 -1.1 589,833 + MPMX19_03249 0.34 -1.7 589,833 + MPMX19_03249 0.34 +0.1 589,833 + MPMX19_03249 0.34 +0.4 589,833 + MPMX19_03249 0.34 -0.1 589,833 + MPMX19_03249 0.34 -1.9 589,833 + MPMX19_03249 0.34 +0.7 589,834 - MPMX19_03249 0.34 -1.1 589,834 - MPMX19_03249 0.34 -0.9 589,834 - MPMX19_03249 0.34 -2.7 589,834 - MPMX19_03249 0.34 +0.1 589,834 - MPMX19_03249 0.34 -0.5 589,834 - MPMX19_03249 0.34 -1.1 589,834 - MPMX19_03249 0.34 -1.0 589,834 - MPMX19_03249 0.34 -1.8 589,834 - MPMX19_03249 0.34 +1.4 589,834 - MPMX19_03249 0.34 -1.1 589,834 - MPMX19_03249 0.34 +0.1 589,834 - MPMX19_03249 0.34 -1.3 590,040 + MPMX19_03249 0.51 -0.6 590,040 + MPMX19_03249 0.51 -1.9 590,040 + MPMX19_03249 0.51 -1.1 590,041 - MPMX19_03249 0.51 -0.4 590,041 - MPMX19_03249 0.51 +1.7 590,041 - MPMX19_03249 0.51 +0.7 590,041 - MPMX19_03249 0.51 -0.6 590,041 - MPMX19_03249 0.51 -1.9 590,041 - MPMX19_03249 0.51 -1.8 590,041 - MPMX19_03249 0.51 +0.9 590,041 - MPMX19_03249 0.51 +0.7 590,142 + MPMX19_03249 0.59 -0.3 590,142 + MPMX19_03249 0.59 -2.3 590,143 - MPMX19_03249 0.59 +0.9 590,202 + MPMX19_03249 0.64 -0.9 590,202 + MPMX19_03249 0.64 -1.6 590,202 + MPMX19_03249 0.64 +0.9 590,202 + MPMX19_03249 0.64 -0.3 590,202 + MPMX19_03249 0.64 -1.1 590,202 + MPMX19_03249 0.64 -0.1 590,202 + MPMX19_03249 0.64 -1.4 590,202 + MPMX19_03249 0.64 -0.9 590,203 - MPMX19_03249 0.64 +0.9 590,203 - MPMX19_03249 0.64 -0.6 590,203 - MPMX19_03249 0.64 -0.6 590,203 - MPMX19_03249 0.64 +0.1 590,310 + MPMX19_03249 0.73 +0.2 590,310 + MPMX19_03249 0.73 -0.3 590,310 + MPMX19_03249 0.73 -0.9 590,310 + MPMX19_03249 0.73 +0.4 590,310 + MPMX19_03249 0.73 +1.7 590,310 + MPMX19_03249 0.73 -0.0 590,310 + MPMX19_03249 0.73 -0.6 590,310 + MPMX19_03249 0.73 +0.3 590,310 + MPMX19_03249 0.73 -0.7 590,311 - MPMX19_03249 0.73 -1.1 590,311 - MPMX19_03249 0.73 -0.9 590,311 - MPMX19_03249 0.73 -0.4 590,311 - MPMX19_03249 0.73 +0.1 590,311 - MPMX19_03249 0.73 +0.1
Or see this region's nucleotide sequence