Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03063 and MPMX19_03064 overlap by 4 nucleotides MPMX19_03064 and MPMX19_03065 are separated by 229 nucleotides MPMX19_03065 and MPMX19_03066 overlap by 11 nucleotides
MPMX19_03063: MPMX19_03063 - hypothetical protein, at 328,577 to 329,062
_03063
MPMX19_03064: MPMX19_03064 - Cytochrome c-type protein NapC, at 329,059 to 329,730
_03064
MPMX19_03065: MPMX19_03065 - Nucleoid occlusion protein, at 329,960 to 330,847
_03065
MPMX19_03066: MPMX19_03066 - hypothetical protein, at 330,837 to 331,850
_03066
Position (kb) 329
330
331 Strain fitness (log2 ratio) -2
-1
0
1 at 329.258 kb on - strand, within MPMX19_03064 at 329.258 kb on - strand, within MPMX19_03064 at 329.258 kb on - strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.569 kb on + strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.570 kb on - strand, within MPMX19_03064 at 329.635 kb on - strand, within MPMX19_03064 at 329.635 kb on - strand, within MPMX19_03064 at 329.961 kb on + strand at 329.961 kb on + strand at 329.961 kb on + strand at 329.962 kb on - strand at 329.962 kb on - strand at 329.962 kb on - strand at 329.962 kb on - strand at 329.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 329,258 - MPMX19_03064 0.30 -1.9 329,258 - MPMX19_03064 0.30 +0.3 329,258 - MPMX19_03064 0.30 -0.8 329,569 + MPMX19_03064 0.76 +0.3 329,569 + MPMX19_03064 0.76 +0.7 329,569 + MPMX19_03064 0.76 -0.9 329,569 + MPMX19_03064 0.76 +0.1 329,570 - MPMX19_03064 0.76 -0.5 329,570 - MPMX19_03064 0.76 -0.9 329,570 - MPMX19_03064 0.76 -1.2 329,570 - MPMX19_03064 0.76 -0.3 329,570 - MPMX19_03064 0.76 +0.8 329,570 - MPMX19_03064 0.76 +0.1 329,570 - MPMX19_03064 0.76 -0.9 329,635 - MPMX19_03064 0.86 -0.8 329,635 - MPMX19_03064 0.86 +0.3 329,961 + -0.4 329,961 + -0.3 329,961 + +0.3 329,962 - -1.8 329,962 - -0.5 329,962 - -0.7 329,962 - -0.9 329,962 - -0.3
Or see this region's nucleotide sequence