Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03055

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03053 and MPMX19_03054 overlap by 1 nucleotidesMPMX19_03054 and MPMX19_03055 overlap by 4 nucleotidesMPMX19_03055 and MPMX19_03056 overlap by 4 nucleotides MPMX19_03053: MPMX19_03053 - Copper-binding lipoprotein NosL, at 316,577 to 317,119 _03053 MPMX19_03054: MPMX19_03054 - putative ABC transporter permease protein NosY, at 317,119 to 317,943 _03054 MPMX19_03055: MPMX19_03055 - putative ABC transporter ATP-binding protein NosF, at 317,940 to 318,866 _03055 MPMX19_03056: MPMX19_03056 - putative ABC transporter binding protein NosD, at 318,863 to 320,239 _03056 Position (kb) 317 318 319Strain fitness (log2 ratio) -2 -1 0 1 2 3at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.983 kb on + strand, within MPMX19_03053at 316.984 kb on - strand, within MPMX19_03053at 316.984 kb on - strand, within MPMX19_03053at 317.288 kb on + strand, within MPMX19_03054at 317.381 kb on + strand, within MPMX19_03054at 317.382 kb on - strand, within MPMX19_03054at 317.382 kb on - strand, within MPMX19_03054at 317.462 kb on + strand, within MPMX19_03054at 317.462 kb on + strand, within MPMX19_03054at 317.666 kb on + strand, within MPMX19_03054at 317.667 kb on - strand, within MPMX19_03054at 317.667 kb on - strand, within MPMX19_03054at 317.667 kb on - strand, within MPMX19_03054at 317.737 kb on + strand, within MPMX19_03054at 317.737 kb on + strand, within MPMX19_03054at 317.738 kb on - strand, within MPMX19_03054at 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.974 kb on + strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 317.975 kb on - strandat 318.346 kb on + strand, within MPMX19_03055at 318.346 kb on + strand, within MPMX19_03055at 318.346 kb on + strand, within MPMX19_03055at 318.346 kb on + strand, within MPMX19_03055at 318.346 kb on + strand, within MPMX19_03055at 318.347 kb on - strand, within MPMX19_03055at 318.347 kb on - strand, within MPMX19_03055at 318.347 kb on - strand, within MPMX19_03055at 318.347 kb on - strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.463 kb on + strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.464 kb on - strand, within MPMX19_03055at 318.559 kb on + strand, within MPMX19_03055at 318.559 kb on + strand, within MPMX19_03055at 318.560 kb on - strand, within MPMX19_03055at 318.560 kb on - strand, within MPMX19_03055at 318.560 kb on - strand, within MPMX19_03055at 318.560 kb on - strand, within MPMX19_03055at 319.044 kb on + strand, within MPMX19_03056at 319.045 kb on - strand, within MPMX19_03056at 319.140 kb on + strand, within MPMX19_03056at 319.140 kb on + strand, within MPMX19_03056at 319.140 kb on + strand, within MPMX19_03056at 319.140 kb on + strand, within MPMX19_03056at 319.141 kb on - strand, within MPMX19_03056at 319.141 kb on - strand, within MPMX19_03056at 319.141 kb on - strand, within MPMX19_03056at 319.141 kb on - strand, within MPMX19_03056at 319.141 kb on - strand, within MPMX19_03056at 319.141 kb on - strand, within MPMX19_03056at 319.141 kb on - strand, within MPMX19_03056at 319.173 kb on + strand, within MPMX19_03056at 319.188 kb on + strand, within MPMX19_03056at 319.188 kb on + strand, within MPMX19_03056at 319.188 kb on + strand, within MPMX19_03056at 319.188 kb on + strand, within MPMX19_03056at 319.188 kb on + strand, within MPMX19_03056at 319.188 kb on + strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.189 kb on - strand, within MPMX19_03056at 319.320 kb on + strand, within MPMX19_03056at 319.320 kb on + strand, within MPMX19_03056at 319.320 kb on + strand, within MPMX19_03056at 319.321 kb on - strand, within MPMX19_03056at 319.321 kb on - strand, within MPMX19_03056at 319.321 kb on - strand, within MPMX19_03056at 319.561 kb on - strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.614 kb on + strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.615 kb on - strand, within MPMX19_03056at 319.620 kb on + strand, within MPMX19_03056at 319.620 kb on + strand, within MPMX19_03056at 319.620 kb on + strand, within MPMX19_03056at 319.620 kb on + strand, within MPMX19_03056at 319.620 kb on + strand, within MPMX19_03056at 319.620 kb on + strand, within MPMX19_03056at 319.620 kb on + strand, within MPMX19_03056at 319.621 kb on - strand, within MPMX19_03056at 319.621 kb on - strand, within MPMX19_03056at 319.621 kb on - strand, within MPMX19_03056at 319.621 kb on - strand, within MPMX19_03056at 319.843 kb on + strand, within MPMX19_03056at 319.843 kb on + strand, within MPMX19_03056at 319.844 kb on - strand, within MPMX19_03056at 319.844 kb on - strand, within MPMX19_03056at 319.844 kb on - strand, within MPMX19_03056at 319.844 kb on - strand, within MPMX19_03056at 319.844 kb on - strand, within MPMX19_03056at 319.844 kb on - strand, within MPMX19_03056at 319.845 kb on + strand, within MPMX19_03056at 319.845 kb on + strand, within MPMX19_03056at 319.845 kb on + strand, within MPMX19_03056at 319.845 kb on + strand, within MPMX19_03056at 319.845 kb on + strand, within MPMX19_03056at 319.845 kb on + strand, within MPMX19_03056at 319.846 kb on - strand, within MPMX19_03056at 319.846 kb on - strand, within MPMX19_03056at 319.846 kb on - strand, within MPMX19_03056at 319.846 kb on - strand, within MPMX19_03056

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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316,983 + MPMX19_03053 0.75 -0.3
316,983 + MPMX19_03053 0.75 -1.1
316,983 + MPMX19_03053 0.75 -1.8
316,983 + MPMX19_03053 0.75 -0.5
316,984 - MPMX19_03053 0.75 -0.1
316,984 - MPMX19_03053 0.75 +1.9
317,288 + MPMX19_03054 0.20 -0.2
317,381 + MPMX19_03054 0.32 +0.1
317,382 - MPMX19_03054 0.32 +0.2
317,382 - MPMX19_03054 0.32 -0.8
317,462 + MPMX19_03054 0.42 -0.1
317,462 + MPMX19_03054 0.42 +0.9
317,666 + MPMX19_03054 0.66 +0.8
317,667 - MPMX19_03054 0.66 -1.3
317,667 - MPMX19_03054 0.66 +1.1
317,667 - MPMX19_03054 0.66 -1.2
317,737 + MPMX19_03054 0.75 +1.4
317,737 + MPMX19_03054 0.75 -0.5
317,738 - MPMX19_03054 0.75 -0.1
317,974 + -0.3
317,974 + -0.9
317,974 + -0.8
317,974 + -1.8
317,974 + -2.4
317,974 + +0.1
317,974 + -1.0
317,974 + +0.4
317,974 + +0.3
317,974 + +0.2
317,974 + +0.2
317,974 + +0.2
317,974 + +0.7
317,974 + -1.7
317,974 + -0.8
317,974 + -1.2
317,974 + -0.9
317,975 - -0.3
317,975 - -2.3
317,975 - -0.1
317,975 - -1.7
317,975 - -0.9
317,975 - -0.3
317,975 - -0.5
317,975 - +1.9
317,975 - -0.9
317,975 - -1.3
317,975 - -1.5
317,975 - +0.1
317,975 - +0.7
317,975 - -0.2
317,975 - +0.4
317,975 - -0.4
317,975 - +0.2
317,975 - +0.4
317,975 - -1.3
317,975 - -1.2
317,975 - +0.1
317,975 - +0.1
317,975 - +0.7
318,346 + MPMX19_03055 0.44 -0.9
318,346 + MPMX19_03055 0.44 +1.3
318,346 + MPMX19_03055 0.44 -2.3
318,346 + MPMX19_03055 0.44 -1.5
318,346 + MPMX19_03055 0.44 -0.6
318,347 - MPMX19_03055 0.44 -1.2
318,347 - MPMX19_03055 0.44 +0.1
318,347 - MPMX19_03055 0.44 -0.5
318,347 - MPMX19_03055 0.44 -1.8
318,463 + MPMX19_03055 0.56 -0.3
318,463 + MPMX19_03055 0.56 -1.3
318,463 + MPMX19_03055 0.56 -0.9
318,463 + MPMX19_03055 0.56 -0.2
318,463 + MPMX19_03055 0.56 -0.9
318,463 + MPMX19_03055 0.56 -1.2
318,463 + MPMX19_03055 0.56 -1.8
318,463 + MPMX19_03055 0.56 -0.7
318,463 + MPMX19_03055 0.56 -0.5
318,463 + MPMX19_03055 0.56 +0.9
318,464 - MPMX19_03055 0.57 -0.5
318,464 - MPMX19_03055 0.57 -1.3
318,464 - MPMX19_03055 0.57 +0.1
318,464 - MPMX19_03055 0.57 -2.7
318,464 - MPMX19_03055 0.57 +0.1
318,464 - MPMX19_03055 0.57 -1.3
318,464 - MPMX19_03055 0.57 -0.9
318,464 - MPMX19_03055 0.57 -0.8
318,464 - MPMX19_03055 0.57 -2.2
318,464 - MPMX19_03055 0.57 -0.2
318,464 - MPMX19_03055 0.57 -1.2
318,559 + MPMX19_03055 0.67 -1.2
318,559 + MPMX19_03055 0.67 -1.2
318,560 - MPMX19_03055 0.67 -0.9
318,560 - MPMX19_03055 0.67 +1.1
318,560 - MPMX19_03055 0.67 -0.3
318,560 - MPMX19_03055 0.67 -0.3
319,044 + MPMX19_03056 0.13 +3.2
319,045 - MPMX19_03056 0.13 -0.5
319,140 + MPMX19_03056 0.20 +0.7
319,140 + MPMX19_03056 0.20 -0.7
319,140 + MPMX19_03056 0.20 +1.7
319,140 + MPMX19_03056 0.20 -0.8
319,141 - MPMX19_03056 0.20 -0.1
319,141 - MPMX19_03056 0.20 +0.5
319,141 - MPMX19_03056 0.20 -0.3
319,141 - MPMX19_03056 0.20 -0.6
319,141 - MPMX19_03056 0.20 -0.8
319,141 - MPMX19_03056 0.20 -0.9
319,141 - MPMX19_03056 0.20 +0.7
319,173 + MPMX19_03056 0.23 -1.1
319,188 + MPMX19_03056 0.24 +0.1
319,188 + MPMX19_03056 0.24 -1.7
319,188 + MPMX19_03056 0.24 -0.8
319,188 + MPMX19_03056 0.24 +0.7
319,188 + MPMX19_03056 0.24 -0.9
319,188 + MPMX19_03056 0.24 -1.7
319,189 - MPMX19_03056 0.24 +0.7
319,189 - MPMX19_03056 0.24 +0.2
319,189 - MPMX19_03056 0.24 +0.3
319,189 - MPMX19_03056 0.24 -1.2
319,189 - MPMX19_03056 0.24 -0.3
319,189 - MPMX19_03056 0.24 -1.8
319,189 - MPMX19_03056 0.24 -0.0
319,189 - MPMX19_03056 0.24 -1.0
319,189 - MPMX19_03056 0.24 -0.6
319,189 - MPMX19_03056 0.24 -0.9
319,189 - MPMX19_03056 0.24 -0.6
319,189 - MPMX19_03056 0.24 -1.0
319,320 + MPMX19_03056 0.33 -1.5
319,320 + MPMX19_03056 0.33 +1.7
319,320 + MPMX19_03056 0.33 -0.7
319,321 - MPMX19_03056 0.33 -1.3
319,321 - MPMX19_03056 0.33 +0.7
319,321 - MPMX19_03056 0.33 -0.7
319,561 - MPMX19_03056 0.51 -0.2
319,614 + MPMX19_03056 0.55 -0.7
319,614 + MPMX19_03056 0.55 -1.4
319,614 + MPMX19_03056 0.55 -0.9
319,614 + MPMX19_03056 0.55 +1.1
319,614 + MPMX19_03056 0.55 -0.8
319,614 + MPMX19_03056 0.55 -0.7
319,614 + MPMX19_03056 0.55 -1.8
319,614 + MPMX19_03056 0.55 -0.3
319,614 + MPMX19_03056 0.55 +0.1
319,614 + MPMX19_03056 0.55 -0.3
319,614 + MPMX19_03056 0.55 +0.5
319,614 + MPMX19_03056 0.55 -1.3
319,614 + MPMX19_03056 0.55 +0.7
319,614 + MPMX19_03056 0.55 -0.3
319,615 - MPMX19_03056 0.55 -1.8
319,615 - MPMX19_03056 0.55 -0.2
319,615 - MPMX19_03056 0.55 -0.2
319,615 - MPMX19_03056 0.55 +1.2
319,615 - MPMX19_03056 0.55 +0.8
319,615 - MPMX19_03056 0.55 -1.3
319,615 - MPMX19_03056 0.55 -0.8
319,615 - MPMX19_03056 0.55 -0.1
319,615 - MPMX19_03056 0.55 +0.7
319,615 - MPMX19_03056 0.55 +0.7
319,615 - MPMX19_03056 0.55 +0.5
319,615 - MPMX19_03056 0.55 -0.1
319,615 - MPMX19_03056 0.55 -1.2
319,615 - MPMX19_03056 0.55 -0.3
319,615 - MPMX19_03056 0.55 -0.5
319,615 - MPMX19_03056 0.55 +0.1
319,615 - MPMX19_03056 0.55 +0.3
319,620 + MPMX19_03056 0.55 +0.1
319,620 + MPMX19_03056 0.55 -0.7
319,620 + MPMX19_03056 0.55 -0.7
319,620 + MPMX19_03056 0.55 -1.8
319,620 + MPMX19_03056 0.55 -1.5
319,620 + MPMX19_03056 0.55 -1.0
319,620 + MPMX19_03056 0.55 -1.6
319,621 - MPMX19_03056 0.55 -1.6
319,621 - MPMX19_03056 0.55 -0.6
319,621 - MPMX19_03056 0.55 +0.2
319,621 - MPMX19_03056 0.55 -1.5
319,843 + MPMX19_03056 0.71 +2.7
319,843 + MPMX19_03056 0.71 -1.2
319,844 - MPMX19_03056 0.71 -0.2
319,844 - MPMX19_03056 0.71 -0.3
319,844 - MPMX19_03056 0.71 -0.7
319,844 - MPMX19_03056 0.71 -0.3
319,844 - MPMX19_03056 0.71 +0.7
319,844 - MPMX19_03056 0.71 -2.0
319,845 + MPMX19_03056 0.71 -0.3
319,845 + MPMX19_03056 0.71 -0.7
319,845 + MPMX19_03056 0.71 +0.7
319,845 + MPMX19_03056 0.71 -0.7
319,845 + MPMX19_03056 0.71 +1.1
319,845 + MPMX19_03056 0.71 +0.1
319,846 - MPMX19_03056 0.71 -1.4
319,846 - MPMX19_03056 0.71 -1.2
319,846 - MPMX19_03056 0.71 +1.4
319,846 - MPMX19_03056 0.71 +0.7

Or see this region's nucleotide sequence