Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02986

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02984 and MPMX19_02985 overlap by 4 nucleotidesMPMX19_02985 and MPMX19_02986 overlap by 4 nucleotidesMPMX19_02986 and MPMX19_02987 are separated by 152 nucleotidesMPMX19_02987 and MPMX19_02988 overlap by 8 nucleotides MPMX19_02984: MPMX19_02984 - Spermidine/putrescine import ATP-binding protein PotA, at 246,654 to 247,730 _02984 MPMX19_02985: MPMX19_02985 - hypothetical protein, at 247,727 to 248,656 _02985 MPMX19_02986: MPMX19_02986 - Inner membrane ABC transporter permease protein YdcV, at 248,653 to 249,453 _02986 MPMX19_02987: MPMX19_02987 - hypothetical protein, at 249,606 to 249,875 _02987 MPMX19_02988: MPMX19_02988 - hypothetical protein, at 249,868 to 250,362 _02988 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 247.823 kb on + strand, within MPMX19_02985at 247.823 kb on + strand, within MPMX19_02985at 247.824 kb on - strand, within MPMX19_02985at 247.873 kb on - strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.919 kb on + strand, within MPMX19_02985at 247.920 kb on - strand, within MPMX19_02985at 247.920 kb on - strand, within MPMX19_02985at 247.920 kb on - strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.955 kb on + strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.956 kb on - strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.979 kb on + strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 247.980 kb on - strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.063 kb on + strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.064 kb on - strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.243 kb on + strand, within MPMX19_02985at 248.244 kb on - strand, within MPMX19_02985at 248.244 kb on - strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.522 kb on + strand, within MPMX19_02985at 248.523 kb on - strand, within MPMX19_02985at 248.523 kb on - strand, within MPMX19_02985at 248.637 kb on - strandat 248.699 kb on + strandat 248.700 kb on - strandat 248.700 kb on - strandat 248.758 kb on + strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.412 kb on + strandat 249.412 kb on + strandat 249.413 kb on - strandat 249.413 kb on - strandat 249.581 kb on - strandat 249.581 kb on - strandat 249.581 kb on - strandat 249.585 kb on + strandat 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.841 kb on - strand, within MPMX19_02987at 249.841 kb on - strand, within MPMX19_02987at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.318 kb on + strandat 250.318 kb on + strandat 250.318 kb on + strandat 250.318 kb on + strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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247,823 + MPMX19_02985 0.10 -1.1
247,823 + MPMX19_02985 0.10 -0.3
247,824 - MPMX19_02985 0.10 -0.6
247,873 - MPMX19_02985 0.16 +0.2
247,919 + MPMX19_02985 0.21 +0.1
247,919 + MPMX19_02985 0.21 +0.4
247,919 + MPMX19_02985 0.21 +0.2
247,919 + MPMX19_02985 0.21 -1.6
247,920 - MPMX19_02985 0.21 -0.3
247,920 - MPMX19_02985 0.21 +0.4
247,920 - MPMX19_02985 0.21 +0.5
247,955 + MPMX19_02985 0.25 +0.1
247,955 + MPMX19_02985 0.25 -0.5
247,955 + MPMX19_02985 0.25 -0.2
247,955 + MPMX19_02985 0.25 -0.5
247,955 + MPMX19_02985 0.25 -0.1
247,955 + MPMX19_02985 0.25 -0.1
247,955 + MPMX19_02985 0.25 -0.3
247,955 + MPMX19_02985 0.25 -0.5
247,956 - MPMX19_02985 0.25 -1.1
247,956 - MPMX19_02985 0.25 -0.9
247,956 - MPMX19_02985 0.25 +0.7
247,956 - MPMX19_02985 0.25 -0.3
247,956 - MPMX19_02985 0.25 -1.8
247,956 - MPMX19_02985 0.25 +1.3
247,956 - MPMX19_02985 0.25 +0.1
247,956 - MPMX19_02985 0.25 -0.1
247,956 - MPMX19_02985 0.25 +0.7
247,956 - MPMX19_02985 0.25 -0.1
247,956 - MPMX19_02985 0.25 +0.9
247,979 + MPMX19_02985 0.27 -0.5
247,979 + MPMX19_02985 0.27 +0.2
247,979 + MPMX19_02985 0.27 +1.1
247,979 + MPMX19_02985 0.27 -0.6
247,979 + MPMX19_02985 0.27 -0.1
247,979 + MPMX19_02985 0.27 -0.9
247,980 - MPMX19_02985 0.27 +0.0
247,980 - MPMX19_02985 0.27 +1.1
247,980 - MPMX19_02985 0.27 -0.6
247,980 - MPMX19_02985 0.27 +0.4
247,980 - MPMX19_02985 0.27 -0.6
247,980 - MPMX19_02985 0.27 +0.4
247,980 - MPMX19_02985 0.27 -0.3
247,980 - MPMX19_02985 0.27 +0.1
248,063 + MPMX19_02985 0.36 -0.5
248,063 + MPMX19_02985 0.36 -0.1
248,063 + MPMX19_02985 0.36 -0.1
248,063 + MPMX19_02985 0.36 +0.7
248,063 + MPMX19_02985 0.36 +0.9
248,063 + MPMX19_02985 0.36 -0.3
248,063 + MPMX19_02985 0.36 -0.9
248,063 + MPMX19_02985 0.36 -0.9
248,063 + MPMX19_02985 0.36 -0.6
248,063 + MPMX19_02985 0.36 +0.4
248,064 - MPMX19_02985 0.36 -1.1
248,064 - MPMX19_02985 0.36 +1.3
248,064 - MPMX19_02985 0.36 +0.4
248,064 - MPMX19_02985 0.36 -2.1
248,064 - MPMX19_02985 0.36 -0.9
248,064 - MPMX19_02985 0.36 +0.7
248,064 - MPMX19_02985 0.36 +0.1
248,243 + MPMX19_02985 0.55 -0.0
248,243 + MPMX19_02985 0.55 +0.2
248,243 + MPMX19_02985 0.55 +0.1
248,243 + MPMX19_02985 0.55 +0.3
248,243 + MPMX19_02985 0.55 +0.2
248,243 + MPMX19_02985 0.55 +0.2
248,243 + MPMX19_02985 0.55 +0.1
248,243 + MPMX19_02985 0.55 -0.9
248,243 + MPMX19_02985 0.55 +0.1
248,243 + MPMX19_02985 0.55 -0.6
248,243 + MPMX19_02985 0.55 -2.1
248,244 - MPMX19_02985 0.56 -0.0
248,244 - MPMX19_02985 0.56 -0.8
248,522 + MPMX19_02985 0.85 -1.1
248,522 + MPMX19_02985 0.85 -0.9
248,522 + MPMX19_02985 0.85 -0.3
248,522 + MPMX19_02985 0.85 -1.5
248,523 - MPMX19_02985 0.86 +0.5
248,523 - MPMX19_02985 0.86 -0.1
248,637 - -1.1
248,699 + -1.3
248,700 - +0.5
248,700 - -1.6
248,758 + MPMX19_02986 0.13 -0.6
248,759 - MPMX19_02986 0.13 -0.3
248,759 - MPMX19_02986 0.13 -2.5
248,759 - MPMX19_02986 0.13 -2.0
248,759 - MPMX19_02986 0.13 +0.1
249,319 + MPMX19_02986 0.83 -0.3
249,319 + MPMX19_02986 0.83 -1.6
249,319 + MPMX19_02986 0.83 +1.1
249,319 + MPMX19_02986 0.83 -1.1
249,320 - MPMX19_02986 0.83 -2.1
249,320 - MPMX19_02986 0.83 -2.2
249,320 - MPMX19_02986 0.83 -1.4
249,412 + -0.7
249,412 + -1.1
249,413 - +1.1
249,413 - -1.1
249,581 - +0.1
249,581 - -1.1
249,581 - -0.6
249,585 + -1.4
249,840 + MPMX19_02987 0.87 +0.1
249,840 + MPMX19_02987 0.87 -0.3
249,840 + MPMX19_02987 0.87 +0.1
249,840 + MPMX19_02987 0.87 +0.4
249,841 - MPMX19_02987 0.87 -0.3
249,841 - MPMX19_02987 0.87 -0.9
250,231 + MPMX19_02988 0.73 +0.2
250,231 + MPMX19_02988 0.73 +0.5
250,231 + MPMX19_02988 0.73 -2.0
250,231 + MPMX19_02988 0.73 +0.9
250,231 + MPMX19_02988 0.73 +1.0
250,231 + MPMX19_02988 0.73 +0.4
250,231 + MPMX19_02988 0.73 -0.6
250,232 - MPMX19_02988 0.74 +0.7
250,232 - MPMX19_02988 0.74 -0.9
250,232 - MPMX19_02988 0.74 -0.1
250,232 - MPMX19_02988 0.74 +1.2
250,318 + -0.6
250,318 + -1.0
250,318 + -0.3
250,318 + -0.3
250,319 - -1.5
250,319 - -1.2
250,319 - -0.3
250,319 - -2.1
250,319 - -1.8
250,319 - +1.1
250,320 + -1.1
250,320 + +2.4
250,320 + +0.1
250,320 + +0.3
250,320 + +0.4
250,320 + +0.7
250,320 + +0.1
250,320 + -1.4
250,321 - +0.4
250,321 - -1.6
250,321 - -0.0
250,321 - -0.1
250,321 - -0.3
250,321 - -1.8

Or see this region's nucleotide sequence