Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02847

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02846 and MPMX19_02847 are separated by 11 nucleotidesMPMX19_02847 and MPMX19_02848 are separated by 74 nucleotides MPMX19_02846: MPMX19_02846 - hypothetical protein, at 88,256 to 89,698 _02846 MPMX19_02847: MPMX19_02847 - Acetate kinase, at 89,710 to 90,936 _02847 MPMX19_02848: MPMX19_02848 - Riboflavin transporter, at 91,011 to 91,961 _02848 Position (kb) 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 88.832 kb on + strand, within MPMX19_02846at 88.964 kb on + strand, within MPMX19_02846at 89.125 kb on + strand, within MPMX19_02846at 89.159 kb on + strand, within MPMX19_02846at 89.159 kb on + strand, within MPMX19_02846at 89.160 kb on - strand, within MPMX19_02846at 89.160 kb on - strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.202 kb on - strand, within MPMX19_02846at 89.202 kb on - strand, within MPMX19_02846at 89.696 kb on + strandat 89.889 kb on + strand, within MPMX19_02847at 89.890 kb on - strand, within MPMX19_02847at 89.890 kb on - strand, within MPMX19_02847at 89.890 kb on - strand, within MPMX19_02847at 90.151 kb on + strand, within MPMX19_02847at 90.266 kb on - strand, within MPMX19_02847at 90.286 kb on + strand, within MPMX19_02847at 90.286 kb on + strand, within MPMX19_02847at 90.287 kb on - strand, within MPMX19_02847at 90.287 kb on - strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.293 kb on - strand, within MPMX19_02847at 90.293 kb on - strand, within MPMX19_02847at 90.293 kb on - strand, within MPMX19_02847at 90.487 kb on + strand, within MPMX19_02847at 90.487 kb on + strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.509 kb on - strand, within MPMX19_02847at 90.509 kb on - strand, within MPMX19_02847at 90.538 kb on + strand, within MPMX19_02847at 90.538 kb on + strand, within MPMX19_02847at 90.538 kb on + strand, within MPMX19_02847at 90.539 kb on - strand, within MPMX19_02847at 90.934 kb on + strandat 90.935 kb on - strandat 90.935 kb on - strandat 91.026 kb on - strandat 91.141 kb on - strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.347 kb on + strand, within MPMX19_02848at 91.347 kb on + strand, within MPMX19_02848at 91.347 kb on + strand, within MPMX19_02848at 91.348 kb on - strand, within MPMX19_02848at 91.348 kb on - strand, within MPMX19_02848at 91.521 kb on + strand, within MPMX19_02848at 91.522 kb on - strand, within MPMX19_02848at 91.522 kb on - strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.726 kb on - strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.779 kb on + strand, within MPMX19_02848at 91.779 kb on + strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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88,832 + MPMX19_02846 0.40 -1.1
88,964 + MPMX19_02846 0.49 -0.7
89,125 + MPMX19_02846 0.60 +0.3
89,159 + MPMX19_02846 0.63 -0.5
89,159 + MPMX19_02846 0.63 -0.6
89,160 - MPMX19_02846 0.63 -1.4
89,160 - MPMX19_02846 0.63 -0.5
89,201 + MPMX19_02846 0.65 +1.1
89,201 + MPMX19_02846 0.65 -1.1
89,201 + MPMX19_02846 0.65 +0.1
89,201 + MPMX19_02846 0.65 -0.0
89,201 + MPMX19_02846 0.65 -1.5
89,201 + MPMX19_02846 0.65 -0.6
89,201 + MPMX19_02846 0.65 -0.6
89,202 - MPMX19_02846 0.66 -0.6
89,202 - MPMX19_02846 0.66 -0.9
89,696 + -0.3
89,889 + MPMX19_02847 0.15 +0.7
89,890 - MPMX19_02847 0.15 -0.6
89,890 - MPMX19_02847 0.15 -2.4
89,890 - MPMX19_02847 0.15 -1.5
90,151 + MPMX19_02847 0.36 -2.8
90,266 - MPMX19_02847 0.45 +1.1
90,286 + MPMX19_02847 0.47 -0.3
90,286 + MPMX19_02847 0.47 -0.1
90,287 - MPMX19_02847 0.47 -0.5
90,287 - MPMX19_02847 0.47 -0.4
90,292 + MPMX19_02847 0.47 -1.1
90,292 + MPMX19_02847 0.47 -0.9
90,292 + MPMX19_02847 0.47 -0.5
90,292 + MPMX19_02847 0.47 +0.2
90,292 + MPMX19_02847 0.47 -1.4
90,292 + MPMX19_02847 0.47 +2.7
90,292 + MPMX19_02847 0.47 -2.6
90,293 - MPMX19_02847 0.48 -0.3
90,293 - MPMX19_02847 0.48 -0.6
90,293 - MPMX19_02847 0.48 +0.4
90,487 + MPMX19_02847 0.63 +0.7
90,487 + MPMX19_02847 0.63 +1.7
90,488 - MPMX19_02847 0.63 -0.9
90,488 - MPMX19_02847 0.63 -0.9
90,488 - MPMX19_02847 0.63 -0.6
90,488 - MPMX19_02847 0.63 -0.6
90,488 - MPMX19_02847 0.63 -0.3
90,488 - MPMX19_02847 0.63 -0.6
90,488 - MPMX19_02847 0.63 -1.1
90,488 - MPMX19_02847 0.63 +0.1
90,488 - MPMX19_02847 0.63 +0.1
90,488 - MPMX19_02847 0.63 -0.3
90,509 - MPMX19_02847 0.65 -0.3
90,509 - MPMX19_02847 0.65 -1.6
90,538 + MPMX19_02847 0.67 -0.9
90,538 + MPMX19_02847 0.67 -0.2
90,538 + MPMX19_02847 0.67 -0.6
90,539 - MPMX19_02847 0.68 -1.6
90,934 + +1.3
90,935 - +0.1
90,935 - -0.2
91,026 - -0.8
91,141 - MPMX19_02848 0.14 -2.8
91,308 + MPMX19_02848 0.31 -0.2
91,308 + MPMX19_02848 0.31 -0.9
91,308 + MPMX19_02848 0.31 -2.0
91,308 + MPMX19_02848 0.31 +1.1
91,308 + MPMX19_02848 0.31 +0.1
91,309 - MPMX19_02848 0.31 -1.5
91,309 - MPMX19_02848 0.31 +0.1
91,309 - MPMX19_02848 0.31 +1.2
91,309 - MPMX19_02848 0.31 -1.8
91,309 - MPMX19_02848 0.31 -1.1
91,347 + MPMX19_02848 0.35 -0.9
91,347 + MPMX19_02848 0.35 -0.1
91,347 + MPMX19_02848 0.35 -0.9
91,348 - MPMX19_02848 0.35 -0.4
91,348 - MPMX19_02848 0.35 +0.4
91,521 + MPMX19_02848 0.54 +0.7
91,522 - MPMX19_02848 0.54 +0.7
91,522 - MPMX19_02848 0.54 -0.1
91,587 + MPMX19_02848 0.61 -0.1
91,587 + MPMX19_02848 0.61 -0.9
91,587 + MPMX19_02848 0.61 -0.3
91,587 + MPMX19_02848 0.61 +0.7
91,587 + MPMX19_02848 0.61 -0.3
91,588 - MPMX19_02848 0.61 -0.3
91,588 - MPMX19_02848 0.61 -0.8
91,588 - MPMX19_02848 0.61 +2.1
91,588 - MPMX19_02848 0.61 -0.6
91,707 + MPMX19_02848 0.73 -0.3
91,707 + MPMX19_02848 0.73 +1.7
91,707 + MPMX19_02848 0.73 -1.1
91,707 + MPMX19_02848 0.73 -1.6
91,707 + MPMX19_02848 0.73 +1.7
91,707 + MPMX19_02848 0.73 -0.1
91,707 + MPMX19_02848 0.73 -0.3
91,708 - MPMX19_02848 0.73 -0.0
91,708 - MPMX19_02848 0.73 -0.1
91,708 - MPMX19_02848 0.73 -1.0
91,708 - MPMX19_02848 0.73 -1.0
91,726 - MPMX19_02848 0.75 -0.4
91,764 + MPMX19_02848 0.79 -0.9
91,764 + MPMX19_02848 0.79 +0.9
91,764 + MPMX19_02848 0.79 +0.1
91,764 + MPMX19_02848 0.79 +0.1
91,765 - MPMX19_02848 0.79 +3.3
91,765 - MPMX19_02848 0.79 +0.7
91,765 - MPMX19_02848 0.79 -0.3
91,765 - MPMX19_02848 0.79 -2.1
91,765 - MPMX19_02848 0.79 -1.1
91,765 - MPMX19_02848 0.79 -0.6
91,765 - MPMX19_02848 0.79 -0.3
91,765 - MPMX19_02848 0.79 +0.5
91,779 + MPMX19_02848 0.81 -0.5
91,779 + MPMX19_02848 0.81 +0.1
91,780 - MPMX19_02848 0.81 -1.6
91,780 - MPMX19_02848 0.81 +0.7
91,780 - MPMX19_02848 0.81 +0.1
91,780 - MPMX19_02848 0.81 -0.1
91,780 - MPMX19_02848 0.81 +0.1
91,878 + -0.2

Or see this region's nucleotide sequence