Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02788 and MPMX19_02789 are separated by 149 nucleotides MPMX19_02789 and MPMX19_02790 are separated by 98 nucleotides MPMX19_02790 and MPMX19_02791 are separated by 274 nucleotides
MPMX19_02788: MPMX19_02788 - Gluconate 5-dehydrogenase, at 20,792 to 21,559
_02788
MPMX19_02789: MPMX19_02789 - hypothetical protein, at 21,709 to 22,404
_02789
MPMX19_02790: MPMX19_02790 - Long-chain-fatty-acid--CoA ligase, at 22,503 to 24,110
_02790
MPMX19_02791: MPMX19_02791 - Haloalkane dehalogenase, at 24,385 to 26,001
_02791
Position (kb) 22
23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 21.697 kb on - strand at 21.709 kb on - strand at 21.940 kb on + strand, within MPMX19_02789 at 21.940 kb on + strand, within MPMX19_02789 at 21.940 kb on + strand, within MPMX19_02789 at 21.940 kb on + strand, within MPMX19_02789 at 21.940 kb on + strand, within MPMX19_02789 at 21.940 kb on + strand, within MPMX19_02789 at 21.940 kb on + strand, within MPMX19_02789 at 21.940 kb on + strand, within MPMX19_02789 at 21.940 kb on + strand, within MPMX19_02789 at 21.941 kb on - strand, within MPMX19_02789 at 21.941 kb on - strand, within MPMX19_02789 at 21.941 kb on - strand, within MPMX19_02789 at 21.946 kb on + strand, within MPMX19_02789 at 21.946 kb on + strand, within MPMX19_02789 at 21.947 kb on - strand, within MPMX19_02789 at 21.947 kb on - strand, within MPMX19_02789 at 22.126 kb on + strand, within MPMX19_02789 at 22.126 kb on + strand, within MPMX19_02789 at 22.126 kb on + strand, within MPMX19_02789 at 22.126 kb on + strand, within MPMX19_02789 at 22.126 kb on - strand, within MPMX19_02789 at 22.127 kb on - strand, within MPMX19_02789 at 22.127 kb on - strand, within MPMX19_02789 at 22.127 kb on - strand, within MPMX19_02789 at 22.127 kb on - strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.128 kb on + strand, within MPMX19_02789 at 22.129 kb on - strand, within MPMX19_02789 at 22.129 kb on - strand, within MPMX19_02789 at 22.129 kb on - strand, within MPMX19_02789 at 22.129 kb on - strand, within MPMX19_02789 at 22.129 kb on - strand, within MPMX19_02789 at 22.129 kb on - strand, within MPMX19_02789 at 22.129 kb on - strand, within MPMX19_02789 at 22.129 kb on - strand, within MPMX19_02789 at 22.300 kb on + strand, within MPMX19_02789 at 22.300 kb on + strand, within MPMX19_02789 at 22.300 kb on + strand, within MPMX19_02789 at 22.301 kb on - strand, within MPMX19_02789 at 22.301 kb on - strand, within MPMX19_02789 at 22.301 kb on - strand, within MPMX19_02789 at 22.301 kb on - strand, within MPMX19_02789 at 22.301 kb on - strand, within MPMX19_02789 at 22.301 kb on - strand, within MPMX19_02789 at 22.348 kb on + strand at 22.348 kb on + strand at 22.348 kb on + strand at 22.349 kb on - strand at 22.349 kb on - strand at 22.349 kb on - strand at 22.486 kb on + strand at 22.504 kb on + strand at 22.504 kb on + strand at 22.591 kb on + strand at 22.591 kb on + strand at 22.591 kb on + strand at 22.592 kb on - strand at 22.606 kb on + strand at 22.606 kb on + strand at 22.606 kb on + strand at 22.606 kb on + strand at 22.606 kb on + strand at 22.606 kb on + strand at 22.607 kb on - strand at 22.607 kb on - strand at 22.607 kb on - strand at 22.607 kb on - strand at 22.607 kb on - strand at 22.607 kb on - strand at 22.780 kb on + strand, within MPMX19_02790 at 22.780 kb on + strand, within MPMX19_02790 at 22.780 kb on + strand, within MPMX19_02790 at 22.780 kb on + strand, within MPMX19_02790 at 22.781 kb on - strand, within MPMX19_02790 at 22.781 kb on - strand, within MPMX19_02790 at 22.781 kb on - strand, within MPMX19_02790 at 22.837 kb on + strand, within MPMX19_02790 at 22.879 kb on + strand, within MPMX19_02790 at 22.879 kb on + strand, within MPMX19_02790 at 22.879 kb on + strand, within MPMX19_02790 at 22.879 kb on + strand, within MPMX19_02790 at 22.879 kb on + strand, within MPMX19_02790 at 22.880 kb on - strand, within MPMX19_02790 at 22.880 kb on - strand, within MPMX19_02790 at 23.110 kb on + strand, within MPMX19_02790 at 23.111 kb on - strand, within MPMX19_02790 at 23.111 kb on - strand, within MPMX19_02790 at 23.111 kb on - strand, within MPMX19_02790 at 23.111 kb on - strand, within MPMX19_02790 at 23.111 kb on - strand, within MPMX19_02790 at 23.218 kb on + strand, within MPMX19_02790 at 23.218 kb on + strand, within MPMX19_02790 at 23.218 kb on + strand, within MPMX19_02790 at 23.218 kb on + strand, within MPMX19_02790 at 23.254 kb on + strand, within MPMX19_02790 at 23.254 kb on + strand, within MPMX19_02790 at 23.254 kb on + strand, within MPMX19_02790 at 23.254 kb on + strand, within MPMX19_02790 at 23.254 kb on + strand, within MPMX19_02790 at 23.254 kb on + strand, within MPMX19_02790 at 23.254 kb on + strand, within MPMX19_02790 at 23.254 kb on + strand, within MPMX19_02790 at 23.254 kb on + strand, within MPMX19_02790 at 23.254 kb on + strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.255 kb on - strand, within MPMX19_02790 at 23.440 kb on + strand, within MPMX19_02790 at 23.440 kb on + strand, within MPMX19_02790 at 23.533 kb on + strand, within MPMX19_02790 at 23.533 kb on + strand, within MPMX19_02790 at 23.533 kb on + strand, within MPMX19_02790 at 23.534 kb on - strand, within MPMX19_02790 at 23.534 kb on - strand, within MPMX19_02790 at 23.534 kb on - strand, within MPMX19_02790 at 23.534 kb on - strand, within MPMX19_02790 at 23.605 kb on - strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.938 kb on + strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.939 kb on - strand, within MPMX19_02790 at 23.945 kb on - strand, within MPMX19_02790 at 23.945 kb on - strand, within MPMX19_02790 at 24.037 kb on + strand at 24.037 kb on + strand at 24.038 kb on - strand at 24.038 kb on - strand at 24.038 kb on - strand at 24.152 kb on + strand at 24.152 kb on + strand at 24.152 kb on + strand at 24.153 kb on - strand at 24.153 kb on - strand at 24.153 kb on - strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.400 kb on + strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.401 kb on - strand at 24.718 kb on + strand, within MPMX19_02791 at 24.718 kb on + strand, within MPMX19_02791 at 24.959 kb on - strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.029 kb on + strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791 at 25.030 kb on - strand, within MPMX19_02791
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 21,697 - -1.5 21,709 - -0.6 21,940 + MPMX19_02789 0.33 +0.3 21,940 + MPMX19_02789 0.33 -0.1 21,940 + MPMX19_02789 0.33 +1.1 21,940 + MPMX19_02789 0.33 -2.0 21,940 + MPMX19_02789 0.33 -0.2 21,940 + MPMX19_02789 0.33 -1.5 21,940 + MPMX19_02789 0.33 -0.6 21,940 + MPMX19_02789 0.33 -2.0 21,940 + MPMX19_02789 0.33 -2.2 21,941 - MPMX19_02789 0.33 -1.1 21,941 - MPMX19_02789 0.33 -0.2 21,941 - MPMX19_02789 0.33 -0.9 21,946 + MPMX19_02789 0.34 -0.3 21,946 + MPMX19_02789 0.34 -0.9 21,947 - MPMX19_02789 0.34 +0.5 21,947 - MPMX19_02789 0.34 -0.8 22,126 + MPMX19_02789 0.60 +0.7 22,126 + MPMX19_02789 0.60 -1.3 22,126 + MPMX19_02789 0.60 +2.3 22,126 + MPMX19_02789 0.60 +0.9 22,126 - MPMX19_02789 0.60 +1.1 22,127 - MPMX19_02789 0.60 -0.9 22,127 - MPMX19_02789 0.60 -0.3 22,127 - MPMX19_02789 0.60 +0.1 22,127 - MPMX19_02789 0.60 -1.5 22,128 + MPMX19_02789 0.60 +0.1 22,128 + MPMX19_02789 0.60 +3.3 22,128 + MPMX19_02789 0.60 -1.1 22,128 + MPMX19_02789 0.60 -0.7 22,128 + MPMX19_02789 0.60 -1.5 22,128 + MPMX19_02789 0.60 -0.6 22,128 + MPMX19_02789 0.60 +1.1 22,128 + MPMX19_02789 0.60 -2.1 22,128 + MPMX19_02789 0.60 +1.3 22,128 + MPMX19_02789 0.60 +0.1 22,128 + MPMX19_02789 0.60 -0.9 22,128 + MPMX19_02789 0.60 +0.1 22,128 + MPMX19_02789 0.60 +0.2 22,129 - MPMX19_02789 0.60 -0.3 22,129 - MPMX19_02789 0.60 +0.7 22,129 - MPMX19_02789 0.60 -0.3 22,129 - MPMX19_02789 0.60 -1.2 22,129 - MPMX19_02789 0.60 +0.1 22,129 - MPMX19_02789 0.60 -1.6 22,129 - MPMX19_02789 0.60 -1.1 22,129 - MPMX19_02789 0.60 -0.6 22,300 + MPMX19_02789 0.85 -0.9 22,300 + MPMX19_02789 0.85 +0.9 22,300 + MPMX19_02789 0.85 +0.7 22,301 - MPMX19_02789 0.85 -1.0 22,301 - MPMX19_02789 0.85 -0.1 22,301 - MPMX19_02789 0.85 -2.7 22,301 - MPMX19_02789 0.85 -2.5 22,301 - MPMX19_02789 0.85 -1.2 22,301 - MPMX19_02789 0.85 +0.7 22,348 + -0.8 22,348 + -0.9 22,348 + -1.1 22,349 - -1.6 22,349 - -2.6 22,349 - -0.6 22,486 + -0.6 22,504 + -0.3 22,504 + +0.1 22,591 + -1.3 22,591 + +0.7 22,591 + +0.1 22,592 - -0.6 22,606 + +0.4 22,606 + -0.9 22,606 + -2.4 22,606 + +0.4 22,606 + -1.6 22,606 + -0.3 22,607 - +1.4 22,607 - +0.1 22,607 - +0.9 22,607 - -0.6 22,607 - -0.8 22,607 - +0.4 22,780 + MPMX19_02790 0.17 -0.3 22,780 + MPMX19_02790 0.17 -0.3 22,780 + MPMX19_02790 0.17 -0.1 22,780 + MPMX19_02790 0.17 -1.5 22,781 - MPMX19_02790 0.17 -1.3 22,781 - MPMX19_02790 0.17 -1.8 22,781 - MPMX19_02790 0.17 -0.6 22,837 + MPMX19_02790 0.21 -1.5 22,879 + MPMX19_02790 0.23 +1.7 22,879 + MPMX19_02790 0.23 +0.4 22,879 + MPMX19_02790 0.23 +0.1 22,879 + MPMX19_02790 0.23 +0.9 22,879 + MPMX19_02790 0.23 -0.3 22,880 - MPMX19_02790 0.23 +0.2 22,880 - MPMX19_02790 0.23 +0.1 23,110 + MPMX19_02790 0.38 -0.5 23,111 - MPMX19_02790 0.38 -0.3 23,111 - MPMX19_02790 0.38 -2.4 23,111 - MPMX19_02790 0.38 -1.5 23,111 - MPMX19_02790 0.38 +0.1 23,111 - MPMX19_02790 0.38 -0.3 23,218 + MPMX19_02790 0.44 -0.9 23,218 + MPMX19_02790 0.44 -1.2 23,218 + MPMX19_02790 0.44 -0.1 23,218 + MPMX19_02790 0.44 -0.5 23,254 + MPMX19_02790 0.47 -0.3 23,254 + MPMX19_02790 0.47 +0.3 23,254 + MPMX19_02790 0.47 +0.4 23,254 + MPMX19_02790 0.47 -0.6 23,254 + MPMX19_02790 0.47 +0.5 23,254 + MPMX19_02790 0.47 +1.4 23,254 + MPMX19_02790 0.47 -0.6 23,254 + MPMX19_02790 0.47 -0.6 23,254 + MPMX19_02790 0.47 +0.1 23,254 + MPMX19_02790 0.47 -1.1 23,255 - MPMX19_02790 0.47 +0.7 23,255 - MPMX19_02790 0.47 +0.5 23,255 - MPMX19_02790 0.47 -1.0 23,255 - MPMX19_02790 0.47 -0.9 23,255 - MPMX19_02790 0.47 -0.8 23,255 - MPMX19_02790 0.47 -0.3 23,255 - MPMX19_02790 0.47 +0.1 23,255 - MPMX19_02790 0.47 -0.9 23,255 - MPMX19_02790 0.47 -1.1 23,255 - MPMX19_02790 0.47 +0.5 23,255 - MPMX19_02790 0.47 -0.3 23,255 - MPMX19_02790 0.47 -0.5 23,255 - MPMX19_02790 0.47 -1.3 23,255 - MPMX19_02790 0.47 +0.1 23,440 + MPMX19_02790 0.58 +0.1 23,440 + MPMX19_02790 0.58 +0.1 23,533 + MPMX19_02790 0.64 -1.1 23,533 + MPMX19_02790 0.64 -2.0 23,533 + MPMX19_02790 0.64 +0.7 23,534 - MPMX19_02790 0.64 +0.1 23,534 - MPMX19_02790 0.64 -3.0 23,534 - MPMX19_02790 0.64 -0.5 23,534 - MPMX19_02790 0.64 -2.0 23,605 - MPMX19_02790 0.69 -0.6 23,938 + MPMX19_02790 0.89 +0.4 23,938 + MPMX19_02790 0.89 -1.8 23,938 + MPMX19_02790 0.89 -0.9 23,938 + MPMX19_02790 0.89 -0.9 23,938 + MPMX19_02790 0.89 +1.1 23,938 + MPMX19_02790 0.89 -0.3 23,938 + MPMX19_02790 0.89 -1.5 23,938 + MPMX19_02790 0.89 -0.3 23,938 + MPMX19_02790 0.89 +0.7 23,938 + MPMX19_02790 0.89 -0.3 23,938 + MPMX19_02790 0.89 +0.7 23,938 + MPMX19_02790 0.89 +0.5 23,939 - MPMX19_02790 0.89 -1.0 23,939 - MPMX19_02790 0.89 -1.0 23,939 - MPMX19_02790 0.89 +0.4 23,939 - MPMX19_02790 0.89 -0.6 23,939 - MPMX19_02790 0.89 -1.8 23,939 - MPMX19_02790 0.89 +1.1 23,945 - MPMX19_02790 0.90 -0.3 23,945 - MPMX19_02790 0.90 +0.1 24,037 + +0.3 24,037 + -1.1 24,038 - +0.1 24,038 - -0.9 24,038 - +1.7 24,152 + -2.0 24,152 + -1.6 24,152 + -0.5 24,153 - -0.8 24,153 - -1.0 24,153 - -2.1 24,400 + -1.1 24,400 + -0.3 24,400 + -2.6 24,400 + -0.3 24,400 + -1.9 24,400 + +0.1 24,400 + -1.1 24,400 + -0.6 24,400 + -2.1 24,401 - +1.4 24,401 - -1.7 24,401 - -1.1 24,401 - -0.3 24,401 - -0.9 24,401 - +0.1 24,401 - -0.8 24,401 - +1.0 24,718 + MPMX19_02791 0.21 +0.1 24,718 + MPMX19_02791 0.21 -1.2 24,959 - MPMX19_02791 0.35 +0.1 25,029 + MPMX19_02791 0.40 -2.1 25,029 + MPMX19_02791 0.40 +0.7 25,029 + MPMX19_02791 0.40 +0.1 25,029 + MPMX19_02791 0.40 -0.5 25,029 + MPMX19_02791 0.40 -2.6 25,029 + MPMX19_02791 0.40 -0.1 25,029 + MPMX19_02791 0.40 -2.1 25,030 - MPMX19_02791 0.40 +2.1 25,030 - MPMX19_02791 0.40 +0.1 25,030 - MPMX19_02791 0.40 -0.2 25,030 - MPMX19_02791 0.40 -0.6 25,030 - MPMX19_02791 0.40 +0.1 25,030 - MPMX19_02791 0.40 -0.3 25,030 - MPMX19_02791 0.40 +0.7 25,030 - MPMX19_02791 0.40 -1.1
Or see this region's nucleotide sequence