Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01707

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01705 and MPMX19_01706 are separated by 21 nucleotidesMPMX19_01706 and MPMX19_01707 overlap by 4 nucleotidesMPMX19_01707 and MPMX19_01708 are separated by 131 nucleotidesMPMX19_01708 and MPMX19_01709 are separated by 19 nucleotides MPMX19_01705: MPMX19_01705 - hypothetical protein, at 1,799,422 to 1,799,799 _01705 MPMX19_01706: MPMX19_01706 - hypothetical protein, at 1,799,821 to 1,800,747 _01706 MPMX19_01707: MPMX19_01707 - Phosphatidylserine decarboxylase proenzyme, at 1,800,744 to 1,801,442 _01707 MPMX19_01708: MPMX19_01708 - hypothetical protein, at 1,801,574 to 1,802,044 _01708 MPMX19_01709: MPMX19_01709 - hypothetical protein, at 1,802,064 to 1,802,504 _01709 Position (kb) 1800 1801 1802Strain fitness (log2 ratio) -2 -1 0 1at 1799.797 kb on + strandat 1799.797 kb on + strandat 1799.797 kb on + strandat 1799.798 kb on - strandat 1799.798 kb on - strandat 1799.798 kb on - strandat 1799.798 kb on - strandat 1799.822 kb on + strandat 1799.822 kb on + strandat 1799.823 kb on - strandat 1799.823 kb on - strandat 1799.823 kb on - strandat 1801.459 kb on - strandat 1801.459 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.488 kb on - strandat 1801.519 kb on - strandat 1801.519 kb on - strandat 1801.652 kb on - strand, within MPMX19_01708at 1801.652 kb on - strand, within MPMX19_01708at 1801.820 kb on + strand, within MPMX19_01708at 1801.820 kb on + strand, within MPMX19_01708at 1801.820 kb on + strand, within MPMX19_01708at 1801.821 kb on - strand, within MPMX19_01708at 1801.821 kb on - strand, within MPMX19_01708at 1801.821 kb on - strand, within MPMX19_01708at 1801.821 kb on - strand, within MPMX19_01708at 1801.821 kb on - strand, within MPMX19_01708at 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.036 kb on + strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.037 kb on - strandat 1802.042 kb on + strandat 1802.042 kb on + strandat 1802.042 kb on + strandat 1802.042 kb on + strandat 1802.042 kb on + strandat 1802.042 kb on + strandat 1802.043 kb on - strandat 1802.343 kb on + strand, within MPMX19_01709

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
1,799,797 + -0.3
1,799,797 + -2.2
1,799,797 + -1.1
1,799,798 - +0.7
1,799,798 - -0.6
1,799,798 - +0.7
1,799,798 - +1.7
1,799,822 + +0.1
1,799,822 + +0.5
1,799,823 - +0.3
1,799,823 - -0.9
1,799,823 - -0.6
1,801,459 - -0.0
1,801,459 - +0.9
1,801,488 - -0.4
1,801,488 - +0.1
1,801,488 - -0.8
1,801,488 - +0.7
1,801,488 - -0.6
1,801,488 - -0.6
1,801,488 - -1.6
1,801,488 - -2.2
1,801,519 - -0.1
1,801,519 - -2.0
1,801,652 - MPMX19_01708 0.17 -0.6
1,801,652 - MPMX19_01708 0.17 +1.7
1,801,820 + MPMX19_01708 0.52 -0.3
1,801,820 + MPMX19_01708 0.52 -1.1
1,801,820 + MPMX19_01708 0.52 -1.5
1,801,821 - MPMX19_01708 0.52 -0.6
1,801,821 - MPMX19_01708 0.52 -0.6
1,801,821 - MPMX19_01708 0.52 -0.5
1,801,821 - MPMX19_01708 0.52 +0.1
1,801,821 - MPMX19_01708 0.52 -1.5
1,802,036 + -0.1
1,802,036 + -0.3
1,802,036 + +0.7
1,802,036 + +0.8
1,802,036 + -0.8
1,802,036 + -0.5
1,802,036 + -0.6
1,802,036 + +0.1
1,802,036 + -0.3
1,802,036 + -0.3
1,802,036 + +1.5
1,802,037 - -1.1
1,802,037 - -0.3
1,802,037 - -0.3
1,802,037 - +0.1
1,802,037 - -0.9
1,802,037 - +0.7
1,802,037 - -1.6
1,802,037 - -0.5
1,802,037 - +0.1
1,802,037 - -1.1
1,802,037 - -0.9
1,802,037 - -1.6
1,802,037 - -1.5
1,802,037 - -0.0
1,802,042 + +1.1
1,802,042 + -0.3
1,802,042 + -1.5
1,802,042 + +1.1
1,802,042 + +1.1
1,802,042 + -1.5
1,802,043 - +0.1
1,802,343 + MPMX19_01709 0.63 +0.5

Or see this region's nucleotide sequence