Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01411

Experiment: NF_with10percent_fullN

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NF_with10percent_fullN
1,473,980	+		MPMX19_01409	0.11	-1.7
1,473,980	+		MPMX19_01409	0.11	+0.1
1,473,980	+		MPMX19_01409	0.11	-1.3
1,473,980	+		MPMX19_01409	0.11	-1.2
1,473,980	+		MPMX19_01409	0.11	-0.7
1,473,980	+		MPMX19_01409	0.11	-0.3
1,473,980	+		MPMX19_01409	0.11	-2.0
1,473,980	+		MPMX19_01409	0.11	+0.8
1,473,981	-		MPMX19_01409	0.11	-1.2
1,473,981	-		MPMX19_01409	0.11	-0.9
1,473,981	-		MPMX19_01409	0.11	-1.3
1,473,981	-		MPMX19_01409	0.11	-0.3
1,473,983	+		MPMX19_01409	0.11	-0.8
1,473,983	+		MPMX19_01409	0.11	-1.3
1,473,983	+		MPMX19_01409	0.11	-0.2
1,473,983	+		MPMX19_01409	0.11	-1.9
1,473,983	+		MPMX19_01409	0.11	-1.9
1,473,983	+		MPMX19_01409	0.11	+0.7
1,473,983	+		MPMX19_01409	0.11	+0.1
1,473,983	+		MPMX19_01409	0.11	-0.5
1,473,983	+		MPMX19_01409	0.11	+0.1
1,473,984	-		MPMX19_01409	0.11	-0.7
1,473,984	-		MPMX19_01409	0.11	-0.9
1,473,984	-		MPMX19_01409	0.11	+0.1
1,473,984	-		MPMX19_01409	0.11	-0.7
1,473,984	-		MPMX19_01409	0.11	-0.7
1,473,984	-		MPMX19_01409	0.11	-2.5
1,473,984	-		MPMX19_01409	0.11	+0.1
1,474,148	+		MPMX19_01409	0.35	+0.1
1,474,149	-		MPMX19_01409	0.35	+0.3
1,474,149	-		MPMX19_01409	0.35	+0.7
1,474,166	+		MPMX19_01409	0.38	-0.7
1,474,166	+		MPMX19_01409	0.38	+0.7
1,474,166	+		MPMX19_01409	0.38	-0.8
1,474,166	+		MPMX19_01409	0.38	-2.5
1,474,166	+		MPMX19_01409	0.38	+0.7
1,474,167	-		MPMX19_01409	0.38	+0.3
1,474,167	-		MPMX19_01409	0.38	+0.5
1,474,167	-		MPMX19_01409	0.38	-1.7
1,474,167	-		MPMX19_01409	0.38	-1.2
1,474,167	-		MPMX19_01409	0.38	-0.3
1,474,193	+		MPMX19_01409	0.42	+0.7
1,474,193	+		MPMX19_01409	0.42	-0.3
1,474,193	+		MPMX19_01409	0.42	-0.9
1,474,193	+		MPMX19_01409	0.42	-2.3
1,474,194	-		MPMX19_01409	0.42	-0.7
1,474,194	-		MPMX19_01409	0.42	-1.3
1,474,194	-		MPMX19_01409	0.42	-0.9
1,474,194	-		MPMX19_01409	0.42	-0.9
1,474,349	+		MPMX19_01409	0.65	-0.7
1,474,349	+		MPMX19_01409	0.65	-0.3
1,474,349	+		MPMX19_01409	0.65	-1.3
1,474,349	+		MPMX19_01409	0.65	+1.1
1,474,349	+		MPMX19_01409	0.65	-1.5
1,474,349	+		MPMX19_01409	0.65	-0.3
1,474,349	+		MPMX19_01409	0.65	+0.1
1,474,349	+		MPMX19_01409	0.65	-0.3
1,474,349	+		MPMX19_01409	0.65	-0.2
1,474,350	-		MPMX19_01409	0.65	-0.3
1,474,350	-		MPMX19_01409	0.65	-1.3
1,474,350	-		MPMX19_01409	0.65	-0.7
1,474,350	-		MPMX19_01409	0.65	+2.2
1,474,350	-		MPMX19_01409	0.65	-1.9
1,474,350	-		MPMX19_01409	0.65	-1.2
1,474,350	-		MPMX19_01409	0.65	+0.1
1,474,350	-		MPMX19_01409	0.65	-0.3
1,474,350	-		MPMX19_01409	0.65	+0.9
1,474,350	-		MPMX19_01409	0.65	-1.8
1,474,350	-		MPMX19_01409	0.65	-0.5
1,474,350	-		MPMX19_01409	0.65	+0.1
1,474,623	+				+0.1
1,474,702	+				+1.1
1,474,703	-				+0.2
1,474,703	-				-0.4
1,474,703	-				+0.7
1,474,703	-				-0.7
1,474,703	-				+0.1
1,474,703	-				-0.3
1,474,703	-				-0.9
1,474,703	-				+0.7
1,474,864	+		MPMX19_01410	0.55	+1.7
1,474,864	+		MPMX19_01410	0.55	-1.0
1,474,864	+		MPMX19_01410	0.55	+0.7
1,474,864	+		MPMX19_01410	0.55	-0.5
1,474,864	+		MPMX19_01410	0.55	-0.1
1,474,864	+		MPMX19_01410	0.55	+0.9
1,474,864	+		MPMX19_01410	0.55	-1.5
1,474,864	+		MPMX19_01410	0.55	-0.8
1,474,864	+		MPMX19_01410	0.55	+2.1
1,474,864	+		MPMX19_01410	0.55	-0.3
1,474,864	+		MPMX19_01410	0.55	+0.9
1,474,864	+		MPMX19_01410	0.55	-1.5
1,474,865	-		MPMX19_01410	0.56	+1.2
1,474,865	-		MPMX19_01410	0.56	-0.3
1,474,865	-		MPMX19_01410	0.56	-0.3
1,474,865	-		MPMX19_01410	0.56	+0.7
1,474,865	-		MPMX19_01410	0.56	+0.7
1,474,865	-		MPMX19_01410	0.56	+1.2
1,474,865	-		MPMX19_01410	0.56	-1.3
1,474,865	-		MPMX19_01410	0.56	-1.5
1,474,865	-		MPMX19_01410	0.56	-1.9
1,474,865	-		MPMX19_01410	0.56	-1.7
1,474,865	-		MPMX19_01410	0.56	+0.7
1,474,865	-		MPMX19_01410	0.56	+0.1
1,474,865	-		MPMX19_01410	0.56	+0.7
1,474,865	-		MPMX19_01410	0.56	+0.7
1,474,865	-		MPMX19_01410	0.56	-1.2
1,474,897	+		MPMX19_01410	0.68	-1.8
1,474,897	+		MPMX19_01410	0.68	-0.7
1,474,897	+		MPMX19_01410	0.68	+0.2
1,474,897	+		MPMX19_01410	0.68	-2.2
1,474,897	+		MPMX19_01410	0.68	-0.7
1,474,898	-		MPMX19_01410	0.68	+0.2
1,474,898	-		MPMX19_01410	0.68	-0.5
1,474,942	+		MPMX19_01410	0.85	+1.2
1,474,942	+		MPMX19_01410	0.85	-0.3
1,474,942	+		MPMX19_01410	0.85	+0.1
1,474,942	+		MPMX19_01410	0.85	+1.3
1,474,942	+		MPMX19_01410	0.85	-0.9
1,474,942	+		MPMX19_01410	0.85	-1.5
1,474,942	+		MPMX19_01410	0.85	-1.5
1,474,942	+		MPMX19_01410	0.85	-0.1
1,474,942	+		MPMX19_01410	0.85	-0.8
1,474,942	+		MPMX19_01410	0.85	+0.7
1,474,942	+		MPMX19_01410	0.85	+0.3
1,474,943	-		MPMX19_01410	0.85	-1.3
1,474,943	-		MPMX19_01410	0.85	-0.0
1,474,943	-		MPMX19_01410	0.85	-0.7
1,474,943	-		MPMX19_01410	0.85	-1.8
1,475,068	+				-0.9
1,475,069	-				+1.7
1,475,236	-		MPMX19_01411	0.16	+0.3
1,475,317	+		MPMX19_01411	0.20	-0.7
1,475,491	+		MPMX19_01411	0.30	-1.2
1,475,491	+		MPMX19_01411	0.30	-0.9
1,475,491	+		MPMX19_01411	0.30	-0.9
1,475,492	-		MPMX19_01411	0.30	-0.4
1,475,492	-		MPMX19_01411	0.30	-1.3
1,475,492	-		MPMX19_01411	0.30	-0.9
1,475,492	-		MPMX19_01411	0.30	+0.7
1,475,492	-		MPMX19_01411	0.30	-1.1
1,475,492	-		MPMX19_01411	0.30	-0.2
1,475,492	-		MPMX19_01411	0.30	-0.9
1,475,492	-		MPMX19_01411	0.30	+0.7
1,475,658	+		MPMX19_01411	0.39	-0.5
1,475,658	+		MPMX19_01411	0.39	-1.1
1,475,658	+		MPMX19_01411	0.39	+0.1
1,475,658	+		MPMX19_01411	0.39	-1.1
1,475,659	-		MPMX19_01411	0.39	+0.1
1,475,659	-		MPMX19_01411	0.39	-0.3
1,475,659	-		MPMX19_01411	0.39	-1.8
1,475,695	+		MPMX19_01411	0.41	-0.3
1,475,695	+		MPMX19_01411	0.41	-1.1
1,475,695	+		MPMX19_01411	0.41	+1.7
1,475,695	+		MPMX19_01411	0.41	-1.3
1,475,695	+		MPMX19_01411	0.41	+1.2
1,475,695	+		MPMX19_01411	0.41	+0.7
1,475,695	+		MPMX19_01411	0.41	+0.7
1,475,695	+		MPMX19_01411	0.41	-0.5
1,475,695	+		MPMX19_01411	0.41	-2.2
1,475,695	+		MPMX19_01411	0.41	-0.3
1,475,695	+		MPMX19_01411	0.41	-0.1
1,475,695	+		MPMX19_01411	0.41	-0.2
1,475,695	+		MPMX19_01411	0.41	-1.1
1,475,695	+		MPMX19_01411	0.41	+0.3
1,475,695	+		MPMX19_01411	0.41	+0.7
1,475,696	-		MPMX19_01411	0.41	-1.1
1,475,696	-		MPMX19_01411	0.41	-0.1
1,475,696	-		MPMX19_01411	0.41	+1.3
1,475,696	-		MPMX19_01411	0.41	-0.4
1,475,696	-		MPMX19_01411	0.41	-0.9
1,475,696	-		MPMX19_01411	0.41	-1.0
1,475,696	-		MPMX19_01411	0.41	+0.9
1,475,696	-		MPMX19_01411	0.41	-0.5
1,475,696	-		MPMX19_01411	0.41	-0.7
1,475,696	-		MPMX19_01411	0.41	+2.7
1,475,696	-		MPMX19_01411	0.41	+2.2
1,475,696	-		MPMX19_01411	0.41	+0.1
1,475,737	+		MPMX19_01411	0.44	-1.1
1,475,737	+		MPMX19_01411	0.44	+0.1
1,475,737	+		MPMX19_01411	0.44	+0.1
1,475,737	+		MPMX19_01411	0.44	-0.3
1,475,737	+		MPMX19_01411	0.44	+2.7
1,475,737	+		MPMX19_01411	0.44	+0.3
1,475,738	-		MPMX19_01411	0.44	+0.7
1,475,738	-		MPMX19_01411	0.44	+0.7
1,475,738	-		MPMX19_01411	0.44	-0.8
1,475,738	-		MPMX19_01411	0.44	-1.5
1,475,738	-		MPMX19_01411	0.44	-0.3
1,476,460	+		MPMX19_01411	0.84	-1.1
1,476,460	+		MPMX19_01411	0.84	-0.7
1,476,460	+		MPMX19_01411	0.84	+1.1
1,476,460	+		MPMX19_01411	0.84	+0.4
1,476,460	+		MPMX19_01411	0.84	+1.1
1,476,460	+		MPMX19_01411	0.84	-2.0
1,476,461	-		MPMX19_01411	0.84	+0.1
1,476,461	-		MPMX19_01411	0.84	+0.7
1,476,461	-		MPMX19_01411	0.84	+0.2
1,476,461	-		MPMX19_01411	0.84	+1.1
1,476,461	-		MPMX19_01411	0.84	-0.5
1,476,461	-		MPMX19_01411	0.84	-0.9
1,476,461	-		MPMX19_01411	0.84	-1.9
1,476,634	+				-1.7
1,476,634	+				-0.9
1,476,635	-				-0.9
1,476,635	-				-2.6
1,476,635	-				+1.1
1,476,635	-				-0.7
1,476,664	+				-0.9
1,476,664	+				-0.7
1,476,664	+				-0.3
1,476,664	+				-2.4
1,476,664	+				-0.5
1,476,664	+				+1.7
1,476,664	+				-1.7
1,476,664	+				-1.5
1,476,665	-				-0.3
1,476,665	-				-0.1
1,476,665	-				-0.9
1,476,665	-				-0.7
1,476,665	-				+0.7
1,476,665	-				-0.9
1,476,665	-				-1.3
1,476,665	-				-0.9
1,476,665	-				-1.1
1,476,665	-				+0.7
1,476,665	-				-0.7
1,476,665	-				-0.3
1,476,737	+				-2.0
1,476,737	+				-0.9
1,476,737	+				+1.1
1,476,737	+				+0.1
1,476,737	+				+0.1
1,476,737	+				-0.3
1,476,738	-				+1.5
1,476,738	-				+0.7
1,476,738	-				-0.7
1,476,835	+				-1.7
1,476,835	+				+1.1
1,476,835	+				+0.3
1,476,835	+				-1.1
1,476,836	-				-0.7
1,476,836	-				-1.6
1,476,907	+				-0.3
1,476,907	+				+0.1
1,476,907	+				+1.2
1,476,907	+				+0.7
1,476,907	+				-0.7
1,476,908	-				-1.1
1,476,908	-				+0.7
1,476,908	-				+0.1
1,476,908	-				-2.2
1,476,908	-				+0.7
1,476,908	-				-0.5
1,476,908	-				-0.1
1,476,992	+		MPMX19_01412	0.12	-1.1
1,476,992	+		MPMX19_01412	0.12	-0.9
1,476,992	+		MPMX19_01412	0.12	+0.5
1,476,993	-		MPMX19_01412	0.12	-0.7
1,477,302	+		MPMX19_01412	0.84	-1.3
1,477,302	+		MPMX19_01412	0.84	+0.3
1,477,302	+		MPMX19_01412	0.84	-0.7
1,477,302	+		MPMX19_01412	0.84	-0.7
1,477,302	+		MPMX19_01412	0.84	+1.0
1,477,302	+		MPMX19_01412	0.84	-2.4
1,477,302	+		MPMX19_01412	0.84	-0.3
1,477,302	+		MPMX19_01412	0.84	-1.6
1,477,302	+		MPMX19_01412	0.84	+0.1
1,477,302	+		MPMX19_01412	0.84	+1.1
1,477,302	+		MPMX19_01412	0.84	-1.1
1,477,302	+		MPMX19_01412	0.84	+1.1
1,477,302	+		MPMX19_01412	0.84	-0.3
1,477,302	+		MPMX19_01412	0.84	-2.0
1,477,302	+		MPMX19_01412	0.84	+0.4
1,477,302	+		MPMX19_01412	0.84	+0.1
1,477,302	+		MPMX19_01412	0.84	+0.2
1,477,302	+		MPMX19_01412	0.84	-1.1
1,477,302	+		MPMX19_01412	0.84	+0.7
1,477,302	+		MPMX19_01412	0.84	-0.9
1,477,302	+		MPMX19_01412	0.84	+0.2
1,477,302	+		MPMX19_01412	0.84	+0.1
1,477,302	+		MPMX19_01412	0.84	-0.9
1,477,302	+		MPMX19_01412	0.84	-0.7
1,477,303	-		MPMX19_01412	0.84	+2.1
1,477,303	-		MPMX19_01412	0.84	-0.3
1,477,303	-		MPMX19_01412	0.84	-0.3
1,477,303	-		MPMX19_01412	0.84	+0.9
1,477,303	-		MPMX19_01412	0.84	-0.7
1,477,303	-		MPMX19_01412	0.84	+0.1
1,477,303	-		MPMX19_01412	0.84	+0.5
1,477,303	-		MPMX19_01412	0.84	+1.2
1,477,303	-		MPMX19_01412	0.84	-0.6
1,477,303	-		MPMX19_01412	0.84	-0.1
1,477,303	-		MPMX19_01412	0.84	-0.3
1,477,303	-		MPMX19_01412	0.84	-0.1
1,477,368	+				+0.1
1,477,368	+				-1.3
1,477,369	-				-0.7
1,477,369	-				-0.4
1,477,369	-				-1.1
1,477,369	-				+0.7
1,477,369	-				+0.3
1,477,369	-				-0.9
1,477,402	+				-0.3
1,477,402	+				-0.1
1,477,402	+				+0.8
1,477,403	-				+1.1
1,477,565	+		MPMX19_01413	0.42	+1.3
1,477,565	+		MPMX19_01413	0.42	+0.1
1,477,565	+		MPMX19_01413	0.42	-2.0
1,477,565	+		MPMX19_01413	0.42	-1.1
1,477,565	+		MPMX19_01413	0.42	-0.0
1,477,565	+		MPMX19_01413	0.42	-0.9
1,477,566	-		MPMX19_01413	0.42	-3.0
1,477,566	-		MPMX19_01413	0.42	-2.0
1,477,566	-		MPMX19_01413	0.42	-1.7
1,477,566	-		MPMX19_01413	0.42	-1.5
1,477,566	-		MPMX19_01413	0.42	+0.7
1,477,566	-		MPMX19_01413	0.42	-0.9
1,477,566	-		MPMX19_01413	0.42	-0.1
1,477,566	-		MPMX19_01413	0.42	-1.1
1,477,566	-		MPMX19_01413	0.42	-1.9
1,477,566	-		MPMX19_01413	0.42	-0.1
1,477,656	+		MPMX19_01413	0.62	-0.3