Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00854 and MPMX19_00855 are separated by 70 nucleotides MPMX19_00855 and MPMX19_00856 are separated by 170 nucleotides
MPMX19_00854: MPMX19_00854 - hypothetical protein, at 884,976 to 888,590
_00854
MPMX19_00855: MPMX19_00855 - Immunogenic protein MPT70, at 888,661 to 889,206
_00855
MPMX19_00856: MPMX19_00856 - Low affinity potassium transport system protein kup, at 889,377 to 891,275
_00856
Position (kb) 888
889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 887.697 kb on + strand, within MPMX19_00854 at 887.697 kb on + strand, within MPMX19_00854 at 887.697 kb on + strand, within MPMX19_00854 at 887.697 kb on + strand, within MPMX19_00854 at 887.698 kb on - strand, within MPMX19_00854 at 887.698 kb on - strand, within MPMX19_00854 at 887.802 kb on + strand, within MPMX19_00854 at 887.802 kb on + strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.549 kb on + strand at 888.550 kb on - strand at 888.550 kb on - strand at 888.588 kb on + strand at 888.588 kb on + strand at 888.588 kb on + strand at 888.588 kb on + strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.612 kb on + strand at 888.613 kb on + strand at 888.613 kb on + strand at 888.613 kb on + strand at 888.613 kb on + strand at 888.614 kb on - strand at 888.614 kb on - strand at 888.614 kb on - strand at 888.614 kb on - strand at 888.646 kb on + strand at 888.646 kb on + strand at 888.646 kb on + strand at 888.646 kb on + strand at 888.646 kb on + strand at 888.646 kb on + strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.828 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.207 kb on - strand at 889.207 kb on - strand at 889.207 kb on - strand at 889.207 kb on - strand at 889.207 kb on - strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.257 kb on + strand at 889.293 kb on + strand at 889.293 kb on + strand at 889.294 kb on - strand at 889.294 kb on - strand at 889.378 kb on + strand at 889.378 kb on + strand at 889.378 kb on + strand at 889.379 kb on - strand at 889.379 kb on - strand at 889.379 kb on - strand at 889.379 kb on - strand at 889.387 kb on - strand at 889.387 kb on - strand at 889.387 kb on - strand at 889.387 kb on - strand at 889.645 kb on + strand, within MPMX19_00856 at 889.645 kb on + strand, within MPMX19_00856 at 889.645 kb on + strand, within MPMX19_00856 at 889.646 kb on - strand, within MPMX19_00856 at 889.646 kb on - strand, within MPMX19_00856 at 889.646 kb on - strand, within MPMX19_00856 at 890.150 kb on - strand, within MPMX19_00856
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 887,697 + MPMX19_00854 0.75 -0.7 887,697 + MPMX19_00854 0.75 -0.7 887,697 + MPMX19_00854 0.75 -1.2 887,697 + MPMX19_00854 0.75 -1.0 887,698 - MPMX19_00854 0.75 -0.5 887,698 - MPMX19_00854 0.75 -0.7 887,802 + MPMX19_00854 0.78 -0.5 887,802 + MPMX19_00854 0.78 -0.9 887,803 - MPMX19_00854 0.78 -1.3 887,803 - MPMX19_00854 0.78 +1.3 887,803 - MPMX19_00854 0.78 -0.4 887,803 - MPMX19_00854 0.78 -0.4 887,803 - MPMX19_00854 0.78 -0.5 887,803 - MPMX19_00854 0.78 +0.6 887,803 - MPMX19_00854 0.78 -1.6 887,803 - MPMX19_00854 0.78 +0.1 887,803 - MPMX19_00854 0.78 +1.2 887,803 - MPMX19_00854 0.78 +1.0 887,803 - MPMX19_00854 0.78 -0.5 887,803 - MPMX19_00854 0.78 +0.6 887,850 + MPMX19_00854 0.80 -0.7 887,850 + MPMX19_00854 0.80 +0.5 887,850 + MPMX19_00854 0.80 +1.1 887,850 + MPMX19_00854 0.80 +1.1 887,850 + MPMX19_00854 0.80 -2.0 887,850 + MPMX19_00854 0.80 +0.9 887,851 - MPMX19_00854 0.80 +0.6 887,851 - MPMX19_00854 0.80 +1.3 887,851 - MPMX19_00854 0.80 +1.6 887,851 - MPMX19_00854 0.80 -1.7 887,851 - MPMX19_00854 0.80 +0.4 887,851 - MPMX19_00854 0.80 +1.6 887,851 - MPMX19_00854 0.80 +0.8 887,851 - MPMX19_00854 0.80 -0.4 887,851 - MPMX19_00854 0.80 -0.7 887,851 - MPMX19_00854 0.80 +0.5 888,524 + -0.7 888,524 + +0.4 888,524 + +0.5 888,524 + +0.2 888,524 + -0.9 888,524 + -1.6 888,524 + +1.6 888,524 + -0.5 888,524 + -0.4 888,524 + +0.4 888,525 - +0.4 888,525 - -0.3 888,525 - +0.6 888,525 - -2.4 888,525 - -0.4 888,525 - -1.4 888,525 - +0.3 888,525 - -0.5 888,525 - +0.3 888,525 - +0.5 888,525 - +0.8 888,525 - +0.6 888,525 - -0.9 888,549 + -0.9 888,550 - -0.6 888,550 - +0.2 888,588 + -1.2 888,588 + +0.1 888,588 + +0.1 888,588 + -0.7 888,589 - -0.1 888,589 - +0.5 888,589 - -2.1 888,589 - -1.2 888,589 - +0.6 888,589 - +1.6 888,589 - -0.7 888,589 - -0.3 888,612 + +0.9 888,613 + -0.4 888,613 + +1.2 888,613 + +0.1 888,613 + -1.6 888,614 - -0.5 888,614 - -1.0 888,614 - -0.8 888,614 - -1.2 888,646 + -0.7 888,646 + +0.3 888,646 + -2.7 888,646 + -0.5 888,646 + +0.8 888,646 + -0.5 888,647 - +0.1 888,647 - +1.6 888,647 - -1.4 888,647 - -0.0 888,647 - -1.1 888,647 - -0.6 888,647 - -0.9 888,647 - -0.6 888,647 - -2.2 888,647 - -0.4 888,828 + MPMX19_00855 0.31 -0.4 888,893 + MPMX19_00855 0.42 +1.2 888,893 + MPMX19_00855 0.42 -0.9 888,893 + MPMX19_00855 0.42 -0.0 888,893 + MPMX19_00855 0.42 -0.7 888,893 + MPMX19_00855 0.42 -2.6 888,893 + MPMX19_00855 0.42 -0.9 888,893 + MPMX19_00855 0.42 -0.7 888,894 - MPMX19_00855 0.43 -0.5 888,894 - MPMX19_00855 0.43 +1.6 888,894 - MPMX19_00855 0.43 -0.7 888,894 - MPMX19_00855 0.43 +0.1 888,894 - MPMX19_00855 0.43 +0.4 888,894 - MPMX19_00855 0.43 +0.1 888,894 - MPMX19_00855 0.43 +0.1 888,894 - MPMX19_00855 0.43 +0.2 888,894 - MPMX19_00855 0.43 -1.4 888,894 - MPMX19_00855 0.43 -0.9 888,894 - MPMX19_00855 0.43 -0.7 888,894 - MPMX19_00855 0.43 -0.7 888,894 - MPMX19_00855 0.43 +0.1 888,894 - MPMX19_00855 0.43 -1.4 888,894 - MPMX19_00855 0.43 -0.4 888,894 - MPMX19_00855 0.43 -3.4 888,894 - MPMX19_00855 0.43 -0.7 888,894 - MPMX19_00855 0.43 -1.9 888,894 - MPMX19_00855 0.43 +0.3 889,112 + MPMX19_00855 0.83 -1.4 889,112 + MPMX19_00855 0.83 +0.3 889,112 + MPMX19_00855 0.83 -0.5 889,112 + MPMX19_00855 0.83 -0.7 889,112 + MPMX19_00855 0.83 +0.9 889,112 + MPMX19_00855 0.83 +2.6 889,113 - MPMX19_00855 0.83 -0.6 889,113 - MPMX19_00855 0.83 -0.1 889,113 - MPMX19_00855 0.83 -0.9 889,113 - MPMX19_00855 0.83 -0.5 889,113 - MPMX19_00855 0.83 +0.1 889,113 - MPMX19_00855 0.83 +0.2 889,113 - MPMX19_00855 0.83 +0.3 889,113 - MPMX19_00855 0.83 +0.3 889,113 - MPMX19_00855 0.83 +0.1 889,113 - MPMX19_00855 0.83 +1.6 889,206 + -1.3 889,206 + -0.2 889,206 + -1.7 889,206 + -0.7 889,206 + -0.1 889,206 + -0.7 889,206 + -2.2 889,206 + -1.2 889,206 + -0.8 889,206 + -1.2 889,206 + +0.5 889,206 + -0.9 889,207 - -0.4 889,207 - +0.6 889,207 - +1.6 889,207 - -0.7 889,207 - -0.3 889,248 + -1.5 889,248 + -1.7 889,248 + +1.1 889,248 + -1.2 889,248 + -1.5 889,248 + +0.6 889,248 + -0.3 889,248 + -1.2 889,248 + -0.7 889,248 + -0.7 889,248 + -0.4 889,248 + -1.5 889,248 + -1.4 889,248 + -0.4 889,248 + +0.6 889,249 - -0.7 889,249 - -1.7 889,249 - -0.5 889,249 - -1.3 889,249 - +0.6 889,249 - +0.8 889,249 - -1.1 889,249 - -1.4 889,249 - +1.1 889,249 - -0.4 889,249 - +0.3 889,249 - +0.1 889,249 - -2.4 889,249 - -0.7 889,249 - -0.3 889,249 - -0.2 889,249 - -0.1 889,257 + -1.4 889,293 + -1.2 889,293 + +1.2 889,294 - -0.7 889,294 - -0.4 889,378 + +0.6 889,378 + -0.7 889,378 + +0.3 889,379 - +0.5 889,379 - +0.9 889,379 - +1.6 889,379 - -0.5 889,387 - -1.1 889,387 - +0.1 889,387 - +1.1 889,387 - -0.7 889,645 + MPMX19_00856 0.14 +0.1 889,645 + MPMX19_00856 0.14 +0.1 889,645 + MPMX19_00856 0.14 -0.5 889,646 - MPMX19_00856 0.14 +0.1 889,646 - MPMX19_00856 0.14 -0.9 889,646 - MPMX19_00856 0.14 -0.9 890,150 - MPMX19_00856 0.41 +0.6
Or see this region's nucleotide sequence