Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00695

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00694 and MPMX19_00695 are separated by 172 nucleotidesMPMX19_00695 and MPMX19_00696 are separated by 36 nucleotides MPMX19_00694: MPMX19_00694 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 716,066 to 716,890 _00694 MPMX19_00695: MPMX19_00695 - putative transcriptional regulatory protein, at 717,063 to 717,815 _00695 MPMX19_00696: MPMX19_00696 - Crossover junction endodeoxyribonuclease RuvC, at 717,852 to 718,940 _00696 Position (kb) 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 716.129 kb on - strandat 716.129 kb on - strandat 716.129 kb on - strandat 716.129 kb on - strandat 716.129 kb on - strandat 716.269 kb on + strand, within MPMX19_00694at 716.269 kb on + strand, within MPMX19_00694at 716.269 kb on + strand, within MPMX19_00694at 716.269 kb on + strand, within MPMX19_00694at 716.269 kb on + strand, within MPMX19_00694at 716.269 kb on + strand, within MPMX19_00694at 716.270 kb on - strand, within MPMX19_00694at 716.270 kb on - strand, within MPMX19_00694at 716.270 kb on - strand, within MPMX19_00694at 716.336 kb on + strand, within MPMX19_00694at 716.337 kb on - strand, within MPMX19_00694at 716.363 kb on + strand, within MPMX19_00694at 716.364 kb on - strand, within MPMX19_00694at 716.364 kb on - strand, within MPMX19_00694at 716.681 kb on + strand, within MPMX19_00694at 716.681 kb on + strand, within MPMX19_00694at 716.682 kb on - strand, within MPMX19_00694at 716.888 kb on + strandat 716.888 kb on + strandat 716.888 kb on + strandat 716.888 kb on + strandat 716.888 kb on + strandat 716.889 kb on - strandat 716.889 kb on - strandat 716.889 kb on - strandat 716.889 kb on - strandat 716.889 kb on - strandat 716.932 kb on + strandat 716.933 kb on - strandat 716.933 kb on - strandat 716.933 kb on - strandat 716.943 kb on + strandat 716.943 kb on + strandat 716.943 kb on + strandat 716.943 kb on + strandat 716.943 kb on + strandat 716.944 kb on - strandat 716.944 kb on - strandat 716.944 kb on - strandat 716.944 kb on - strandat 716.944 kb on - strandat 716.944 kb on - strandat 716.944 kb on - strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.000 kb on + strandat 717.309 kb on + strand, within MPMX19_00695at 717.309 kb on + strand, within MPMX19_00695at 717.309 kb on + strand, within MPMX19_00695at 717.309 kb on + strand, within MPMX19_00695at 717.324 kb on + strand, within MPMX19_00695at 717.333 kb on + strand, within MPMX19_00695at 717.423 kb on + strand, within MPMX19_00695at 717.423 kb on + strand, within MPMX19_00695at 717.423 kb on + strand, within MPMX19_00695at 717.423 kb on + strand, within MPMX19_00695at 718.388 kb on + strand, within MPMX19_00696at 718.388 kb on + strand, within MPMX19_00696at 718.388 kb on + strand, within MPMX19_00696at 718.388 kb on + strand, within MPMX19_00696at 718.388 kb on + strand, within MPMX19_00696at 718.388 kb on + strand, within MPMX19_00696at 718.388 kb on + strand, within MPMX19_00696at 718.388 kb on + strand, within MPMX19_00696at 718.388 kb on + strand, within MPMX19_00696at 718.388 kb on + strand, within MPMX19_00696at 718.388 kb on + strand, within MPMX19_00696at 718.389 kb on - strand, within MPMX19_00696at 718.389 kb on - strand, within MPMX19_00696at 718.389 kb on - strand, within MPMX19_00696at 718.389 kb on - strand, within MPMX19_00696at 718.389 kb on - strand, within MPMX19_00696at 718.389 kb on - strand, within MPMX19_00696at 718.389 kb on - strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.631 kb on + strand, within MPMX19_00696at 718.633 kb on + strand, within MPMX19_00696at 718.633 kb on + strand, within MPMX19_00696at 718.633 kb on + strand, within MPMX19_00696

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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716,129 - -0.7
716,129 - -0.4
716,129 - -0.7
716,129 - +0.3
716,129 - -1.0
716,269 + MPMX19_00694 0.25 -2.1
716,269 + MPMX19_00694 0.25 -1.0
716,269 + MPMX19_00694 0.25 -1.0
716,269 + MPMX19_00694 0.25 -0.4
716,269 + MPMX19_00694 0.25 +0.0
716,269 + MPMX19_00694 0.25 -1.0
716,270 - MPMX19_00694 0.25 +0.0
716,270 - MPMX19_00694 0.25 -1.0
716,270 - MPMX19_00694 0.25 +1.6
716,336 + MPMX19_00694 0.33 -0.4
716,337 - MPMX19_00694 0.33 -0.7
716,363 + MPMX19_00694 0.36 +0.0
716,364 - MPMX19_00694 0.36 -0.7
716,364 - MPMX19_00694 0.36 +0.9
716,681 + MPMX19_00694 0.75 -0.7
716,681 + MPMX19_00694 0.75 -0.7
716,682 - MPMX19_00694 0.75 -0.7
716,888 + -0.1
716,888 + +0.0
716,888 + -0.7
716,888 + +0.6
716,888 + -0.4
716,889 - +0.6
716,889 - +0.0
716,889 - -3.0
716,889 - -0.8
716,889 - -1.0
716,932 + -1.2
716,933 - -2.8
716,933 - -0.1
716,933 - -2.0
716,943 + +0.6
716,943 + +0.6
716,943 + -1.4
716,943 + +0.8
716,943 + -2.2
716,944 - -0.1
716,944 - +1.3
716,944 - -0.2
716,944 - -0.6
716,944 - -1.7
716,944 - -0.4
716,944 - -0.1
717,000 + +1.9
717,000 + -0.7
717,000 + -1.6
717,000 + -1.8
717,000 + -2.1
717,000 + -0.7
717,000 + -0.7
717,000 + -1.2
717,000 + -0.4
717,000 + -0.6
717,000 + +0.4
717,000 + -2.1
717,000 + -0.4
717,000 + -1.0
717,000 + +0.6
717,000 + +0.6
717,000 + -0.6
717,000 + +0.3
717,000 + -0.4
717,000 + +0.4
717,000 + -0.3
717,000 + -2.2
717,000 + -1.0
717,000 + -0.2
717,000 + +1.3
717,000 + +0.0
717,000 + +1.2
717,000 + -0.2
717,000 + -1.2
717,000 + +1.2
717,309 + MPMX19_00695 0.33 -0.4
717,309 + MPMX19_00695 0.33 -1.4
717,309 + MPMX19_00695 0.33 +1.0
717,309 + MPMX19_00695 0.33 -1.2
717,324 + MPMX19_00695 0.35 -1.0
717,333 + MPMX19_00695 0.36 -0.4
717,423 + MPMX19_00695 0.48 +2.0
717,423 + MPMX19_00695 0.48 +1.6
717,423 + MPMX19_00695 0.48 -0.4
717,423 + MPMX19_00695 0.48 -1.2
718,388 + MPMX19_00696 0.49 -0.4
718,388 + MPMX19_00696 0.49 +0.7
718,388 + MPMX19_00696 0.49 -1.3
718,388 + MPMX19_00696 0.49 +0.0
718,388 + MPMX19_00696 0.49 -0.2
718,388 + MPMX19_00696 0.49 +0.0
718,388 + MPMX19_00696 0.49 -2.7
718,388 + MPMX19_00696 0.49 +0.0
718,388 + MPMX19_00696 0.49 -0.7
718,388 + MPMX19_00696 0.49 +0.0
718,388 + MPMX19_00696 0.49 +0.0
718,389 - MPMX19_00696 0.49 -1.6
718,389 - MPMX19_00696 0.49 -1.7
718,389 - MPMX19_00696 0.49 +0.0
718,389 - MPMX19_00696 0.49 -1.0
718,389 - MPMX19_00696 0.49 +0.3
718,389 - MPMX19_00696 0.49 +1.2
718,389 - MPMX19_00696 0.49 +0.0
718,631 + MPMX19_00696 0.72 -0.2
718,631 + MPMX19_00696 0.72 +1.0
718,631 + MPMX19_00696 0.72 +0.0
718,631 + MPMX19_00696 0.72 -0.7
718,631 + MPMX19_00696 0.72 -0.2
718,631 + MPMX19_00696 0.72 -0.2
718,631 + MPMX19_00696 0.72 +2.0
718,631 + MPMX19_00696 0.72 -1.4
718,631 + MPMX19_00696 0.72 -1.2
718,633 + MPMX19_00696 0.72 -0.7
718,633 + MPMX19_00696 0.72 -0.7
718,633 + MPMX19_00696 0.72 -1.2

Or see this region's nucleotide sequence