Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00685

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00684 and MPMX19_00685 are separated by 167 nucleotidesMPMX19_00685 and MPMX19_00686 are separated by 110 nucleotidesMPMX19_00686 and MPMX19_00687 are separated by 27 nucleotides MPMX19_00684: MPMX19_00684 - Fructose-bisphosphate aldolase class 1, at 706,703 to 707,632 _00684 MPMX19_00685: MPMX19_00685 - hypothetical protein, at 707,800 to 708,036 _00685 MPMX19_00686: MPMX19_00686 - hypothetical protein, at 708,147 to 708,788 _00686 MPMX19_00687: MPMX19_00687 - hypothetical protein, at 708,816 to 709,160 _00687 Position (kb) 707 708 709Strain fitness (log2 ratio) -2 -1 0 1 2at 707.714 kb on + strandat 707.714 kb on + strandat 707.714 kb on + strandat 707.714 kb on + strandat 707.715 kb on - strandat 707.715 kb on - strandat 707.715 kb on - strandat 707.715 kb on - strandat 707.715 kb on - strandat 707.828 kb on + strand, within MPMX19_00685at 707.828 kb on + strand, within MPMX19_00685at 707.828 kb on + strand, within MPMX19_00685at 707.828 kb on + strand, within MPMX19_00685at 707.828 kb on + strand, within MPMX19_00685at 707.828 kb on + strand, within MPMX19_00685at 707.828 kb on + strand, within MPMX19_00685at 707.828 kb on + strand, within MPMX19_00685at 707.828 kb on + strand, within MPMX19_00685at 707.828 kb on + strand, within MPMX19_00685at 707.828 kb on + strand, within MPMX19_00685at 707.829 kb on - strand, within MPMX19_00685at 707.829 kb on - strand, within MPMX19_00685at 707.829 kb on - strand, within MPMX19_00685at 707.829 kb on - strand, within MPMX19_00685at 707.829 kb on - strand, within MPMX19_00685at 707.829 kb on - strand, within MPMX19_00685at 707.838 kb on - strand, within MPMX19_00685at 707.838 kb on - strand, within MPMX19_00685at 708.087 kb on + strandat 708.088 kb on - strandat 708.088 kb on - strandat 708.088 kb on - strandat 708.098 kb on + strandat 708.098 kb on + strandat 708.098 kb on + strandat 708.098 kb on + strandat 708.098 kb on + strandat 708.098 kb on + strandat 708.098 kb on + strandat 708.099 kb on - strandat 708.099 kb on - strandat 708.099 kb on - strandat 708.099 kb on - strandat 708.099 kb on - strandat 708.137 kb on + strandat 708.180 kb on + strandat 708.181 kb on - strandat 708.181 kb on - strandat 708.181 kb on - strandat 708.634 kb on + strand, within MPMX19_00686at 708.634 kb on + strand, within MPMX19_00686at 708.634 kb on + strand, within MPMX19_00686at 708.634 kb on + strand, within MPMX19_00686at 708.634 kb on + strand, within MPMX19_00686at 708.634 kb on + strand, within MPMX19_00686at 708.635 kb on - strand, within MPMX19_00686at 708.635 kb on - strand, within MPMX19_00686at 708.635 kb on - strand, within MPMX19_00686at 708.635 kb on - strand, within MPMX19_00686at 708.740 kb on + strandat 708.740 kb on + strandat 708.740 kb on + strandat 708.740 kb on + strandat 708.740 kb on + strandat 708.741 kb on - strandat 708.741 kb on - strandat 708.741 kb on - strandat 708.794 kb on + strandat 708.794 kb on + strandat 708.794 kb on + strandat 708.794 kb on + strandat 708.795 kb on - strandat 708.795 kb on - strandat 708.795 kb on - strandat 708.795 kb on - strandat 708.795 kb on - strandat 708.795 kb on - strandat 708.825 kb on + strandat 708.825 kb on + strandat 708.825 kb on + strandat 708.825 kb on + strandat 708.825 kb on + strandat 708.825 kb on + strandat 708.825 kb on + strandat 708.825 kb on + strandat 708.825 kb on + strandat 708.825 kb on + strandat 708.826 kb on - strandat 708.826 kb on - strandat 708.826 kb on - strandat 708.834 kb on + strandat 708.835 kb on - strandat 708.835 kb on - strandat 708.835 kb on - strandat 708.835 kb on - strandat 708.835 kb on - strandat 708.835 kb on - strandat 708.969 kb on + strand, within MPMX19_00687at 708.970 kb on - strand, within MPMX19_00687at 708.970 kb on - strand, within MPMX19_00687at 708.970 kb on - strand, within MPMX19_00687at 708.970 kb on - strand, within MPMX19_00687at 708.989 kb on + strand, within MPMX19_00687

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
707,714 + +1.0
707,714 + +0.1
707,714 + -0.4
707,714 + -2.0
707,715 - -1.8
707,715 - +0.0
707,715 - -0.4
707,715 - -0.4
707,715 - +2.0
707,828 + MPMX19_00685 0.12 -0.6
707,828 + MPMX19_00685 0.12 -0.8
707,828 + MPMX19_00685 0.12 +0.2
707,828 + MPMX19_00685 0.12 +0.8
707,828 + MPMX19_00685 0.12 -0.6
707,828 + MPMX19_00685 0.12 -1.0
707,828 + MPMX19_00685 0.12 +0.3
707,828 + MPMX19_00685 0.12 +0.4
707,828 + MPMX19_00685 0.12 -1.7
707,828 + MPMX19_00685 0.12 -0.3
707,828 + MPMX19_00685 0.12 -0.5
707,829 - MPMX19_00685 0.12 -1.6
707,829 - MPMX19_00685 0.12 -1.0
707,829 - MPMX19_00685 0.12 +0.0
707,829 - MPMX19_00685 0.12 -1.4
707,829 - MPMX19_00685 0.12 -0.4
707,829 - MPMX19_00685 0.12 -2.5
707,838 - MPMX19_00685 0.16 -0.6
707,838 - MPMX19_00685 0.16 -1.7
708,087 + +1.0
708,088 - -0.4
708,088 - +0.0
708,088 - -1.4
708,098 + -1.6
708,098 + -1.6
708,098 + -0.4
708,098 + +0.3
708,098 + -1.0
708,098 + -0.4
708,098 + -1.6
708,099 - +0.3
708,099 - -0.7
708,099 - -0.8
708,099 - -1.0
708,099 - -2.1
708,137 + -1.8
708,180 + +0.0
708,181 - -0.3
708,181 - +1.2
708,181 - -0.4
708,634 + MPMX19_00686 0.76 -1.5
708,634 + MPMX19_00686 0.76 -1.7
708,634 + MPMX19_00686 0.76 -0.4
708,634 + MPMX19_00686 0.76 +0.2
708,634 + MPMX19_00686 0.76 +1.6
708,634 + MPMX19_00686 0.76 +0.6
708,635 - MPMX19_00686 0.76 -0.4
708,635 - MPMX19_00686 0.76 +0.0
708,635 - MPMX19_00686 0.76 -0.2
708,635 - MPMX19_00686 0.76 +0.3
708,740 + +0.3
708,740 + -0.2
708,740 + -0.6
708,740 + +0.2
708,740 + -1.4
708,741 - -0.5
708,741 - -1.2
708,741 - -0.8
708,794 + -1.5
708,794 + +0.0
708,794 + -1.4
708,794 + +0.2
708,795 - -0.7
708,795 - -1.6
708,795 - -1.2
708,795 - +1.3
708,795 - +0.9
708,795 - -0.7
708,825 + -1.2
708,825 + +0.0
708,825 + +1.6
708,825 + -0.3
708,825 + +0.6
708,825 + +0.1
708,825 + +0.6
708,825 + -0.7
708,825 + -0.8
708,825 + -1.7
708,826 - +0.0
708,826 - -1.6
708,826 - -2.3
708,834 + -0.6
708,835 - +0.2
708,835 - +0.8
708,835 - -2.0
708,835 - -1.7
708,835 - -0.4
708,835 - +0.6
708,969 + MPMX19_00687 0.44 +0.3
708,970 - MPMX19_00687 0.45 +0.3
708,970 - MPMX19_00687 0.45 +0.9
708,970 - MPMX19_00687 0.45 -0.4
708,970 - MPMX19_00687 0.45 +0.0
708,989 + MPMX19_00687 0.50 -1.6

Or see this region's nucleotide sequence