Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00575 and MPMX19_00576 are separated by 214 nucleotides MPMX19_00576 and MPMX19_00577 are separated by 179 nucleotides MPMX19_00577 and MPMX19_00578 are separated by 48 nucleotides
MPMX19_00575: MPMX19_00575 - 4-hydroxybenzoate octaprenyltransferase, at 589,657 to 590,604
_00575
MPMX19_00576: MPMX19_00576 - hypothetical protein, at 590,819 to 591,208
_00576
MPMX19_00577: MPMX19_00577 - Ribosomal RNA small subunit methyltransferase E, at 591,388 to 592,167
_00577
MPMX19_00578: MPMX19_00578 - Glutamate--cysteine ligase EgtA, at 592,216 to 593,580
_00578
Position (kb) 591
592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 590.510 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.628 kb on - strand at 590.675 kb on - strand at 590.675 kb on - strand at 590.675 kb on - strand at 590.675 kb on - strand at 590.730 kb on + strand at 590.731 kb on - strand at 590.778 kb on + strand at 590.778 kb on + strand at 590.778 kb on + strand at 590.779 kb on - strand at 590.794 kb on + strand at 590.794 kb on + strand at 590.794 kb on + strand at 590.794 kb on + strand at 590.795 kb on - strand at 590.795 kb on - strand at 590.915 kb on + strand, within MPMX19_00576 at 590.916 kb on - strand, within MPMX19_00576 at 590.916 kb on - strand, within MPMX19_00576 at 590.999 kb on + strand, within MPMX19_00576 at 591.139 kb on + strand, within MPMX19_00576 at 591.139 kb on + strand, within MPMX19_00576 at 591.139 kb on + strand, within MPMX19_00576 at 591.140 kb on - strand, within MPMX19_00576 at 591.270 kb on + strand at 591.270 kb on + strand at 591.270 kb on + strand at 591.270 kb on + strand at 591.271 kb on - strand at 591.271 kb on - strand at 591.271 kb on - strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 590,510 - -0.7 590,628 - +1.0 590,628 - +2.3 590,628 - +0.0 590,628 - -0.4 590,628 - -1.6 590,628 - -1.2 590,628 - -0.1 590,628 - -2.4 590,628 - -0.4 590,628 - +1.2 590,628 - -1.0 590,628 - -1.5 590,675 - +2.2 590,675 - -0.5 590,675 - -0.2 590,675 - -1.0 590,730 + -0.2 590,731 - -0.1 590,778 + -0.7 590,778 + -1.4 590,778 + -1.0 590,779 - -0.7 590,794 + -0.7 590,794 + -0.8 590,794 + -0.7 590,794 + -0.9 590,795 - -1.2 590,795 - -1.7 590,915 + MPMX19_00576 0.25 -1.7 590,916 - MPMX19_00576 0.25 +0.2 590,916 - MPMX19_00576 0.25 +0.6 590,999 + MPMX19_00576 0.46 +0.6 591,139 + MPMX19_00576 0.82 +1.0 591,139 + MPMX19_00576 0.82 +0.0 591,139 + MPMX19_00576 0.82 +0.0 591,140 - MPMX19_00576 0.82 +1.6 591,270 + -0.4 591,270 + +1.0 591,270 + -1.0 591,270 + -2.2 591,271 - +0.0 591,271 - -2.9 591,271 - +0.4 591,300 + -1.0 591,300 + -1.0 591,300 + -0.3 591,300 + -0.4 591,300 + +0.3 591,301 - +2.2 591,301 - -0.2 591,301 - -1.7 591,301 - -0.1 591,301 - +1.0 591,301 - -1.8 591,301 - -0.4 591,355 + +0.6 591,355 + -1.6 591,355 + -1.6 591,355 + -1.2 591,355 + -1.1 591,355 + +1.6 591,355 + -1.0 591,355 + -0.3 591,355 + -1.6 591,355 + -1.1 591,355 + -0.2 591,355 + +0.0 591,355 + -2.3 591,355 + +0.3 591,355 + +0.0 591,355 + +0.0 591,355 + +0.1 591,356 - -0.9 591,356 - +0.3 591,356 - -0.7 591,356 - -0.7 591,356 - -0.3 591,356 - +1.6 591,356 - +0.0 591,356 - +0.2 591,356 - -1.6 591,356 - +0.8 591,356 - +0.0 591,356 - -1.7 591,356 - -1.2 591,357 + +0.9 591,357 + +0.0 591,357 + +0.3 591,357 + -0.7 591,357 + +1.0 591,357 + -0.7 591,357 + +1.0 591,357 + +0.6 591,357 + +0.4 591,357 + -1.2 591,357 + -0.7 591,357 + -0.7 591,357 + -1.6 591,357 + +0.0 591,358 - -0.5 591,358 - +0.8 591,358 - -0.6 591,358 - -0.9 591,358 - -1.0 591,358 - -0.7 591,358 - -1.3 591,358 - -1.6 591,358 - +0.0 591,358 - -1.0 591,358 - +0.0 591,358 - -0.7 591,358 - +0.4 591,358 - -0.1 591,415 + +0.4 591,415 + -1.0 591,415 + -0.2 591,415 + +0.0 591,415 + -0.7 591,415 + -1.6 591,415 + -0.5 591,415 + -0.4 591,415 + -0.1 591,415 + -0.7 591,415 + -1.2 591,416 - +0.1 591,416 - -0.7 591,416 - -1.1 591,416 - +0.0 591,416 - +0.2 591,416 - +0.0 591,416 - -2.1 591,416 - -2.6 591,416 - -0.3 591,416 - -1.0 591,416 - -1.3 591,416 - +0.0 591,883 + MPMX19_00577 0.63 +0.0 591,883 + MPMX19_00577 0.63 -1.2 591,883 + MPMX19_00577 0.63 +0.0 591,883 + MPMX19_00577 0.63 +0.3 591,883 + MPMX19_00577 0.63 -1.6 591,883 + MPMX19_00577 0.63 -1.6 591,883 + MPMX19_00577 0.63 -0.7 591,883 + MPMX19_00577 0.63 -1.2 591,883 + MPMX19_00577 0.63 -1.1 591,883 + MPMX19_00577 0.63 +1.6 591,884 - MPMX19_00577 0.64 -1.8 591,884 - MPMX19_00577 0.64 -0.4 591,884 - MPMX19_00577 0.64 -0.7 591,884 - MPMX19_00577 0.64 -0.7 591,884 - MPMX19_00577 0.64 +0.3 591,884 - MPMX19_00577 0.64 -2.0 591,884 - MPMX19_00577 0.64 +0.0 591,884 - MPMX19_00577 0.64 -0.4 591,884 - MPMX19_00577 0.64 -1.2 591,884 - MPMX19_00577 0.64 -1.4 591,884 - MPMX19_00577 0.64 +1.4 591,884 - MPMX19_00577 0.64 +0.6 591,884 - MPMX19_00577 0.64 -0.4 591,884 - MPMX19_00577 0.64 -1.4 591,884 - MPMX19_00577 0.64 +0.0
Or see this region's nucleotide sequence