Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00512 and MPMX19_00513 are separated by 254 nucleotides MPMX19_00513 and MPMX19_00514 are separated by 302 nucleotides
MPMX19_00512: MPMX19_00512 - Sensor histidine kinase RcsC, at 515,154 to 516,764
_00512
MPMX19_00513: MPMX19_00513 - Phosphotransferase RcsD, at 517,019 to 518,488
_00513
MPMX19_00514: MPMX19_00514 - Sensor histidine kinase RcsC, at 518,791 to 521,076
_00514
Position (kb) 517
518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 516.375 kb on + strand, within MPMX19_00512 at 516.375 kb on + strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.412 kb on - strand, within MPMX19_00512 at 516.783 kb on + strand at 516.783 kb on + strand at 516.783 kb on + strand at 516.783 kb on + strand at 516.784 kb on - strand at 516.784 kb on - strand at 516.784 kb on - strand at 516.790 kb on - strand at 516.790 kb on - strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.816 kb on - strand at 516.827 kb on + strand at 516.827 kb on + strand at 516.828 kb on - strand at 516.842 kb on - strand at 516.842 kb on - strand at 516.884 kb on + strand at 516.919 kb on + strand at 516.919 kb on + strand at 516.919 kb on + strand at 516.920 kb on - strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.990 kb on + strand at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.409 kb on - strand at 518.529 kb on + strand at 518.529 kb on + strand at 518.529 kb on + strand at 518.529 kb on + strand at 518.529 kb on + strand at 518.530 kb on - strand at 518.530 kb on - strand at 518.540 kb on + strand at 518.540 kb on + strand at 518.541 kb on - strand at 518.554 kb on + strand at 518.555 kb on - strand at 518.604 kb on + strand at 518.605 kb on - strand at 518.605 kb on - strand at 518.651 kb on - strand at 518.673 kb on + strand at 518.722 kb on + strand at 518.722 kb on + strand at 518.723 kb on - strand at 518.738 kb on + strand at 518.739 kb on - strand at 519.073 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.443 kb on - strand, within MPMX19_00514 at 519.443 kb on - strand, within MPMX19_00514 at 519.443 kb on - strand, within MPMX19_00514 at 519.443 kb on - strand, within MPMX19_00514 at 519.443 kb on - strand, within MPMX19_00514 at 519.478 kb on + strand, within MPMX19_00514 at 519.478 kb on + strand, within MPMX19_00514 at 519.478 kb on + strand, within MPMX19_00514 at 519.478 kb on + strand, within MPMX19_00514 at 519.479 kb on - strand, within MPMX19_00514 at 519.479 kb on - strand, within MPMX19_00514 at 519.479 kb on - strand, within MPMX19_00514 at 519.479 kb on - strand, within MPMX19_00514
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 516,375 + MPMX19_00512 0.76 +0.9 516,375 + MPMX19_00512 0.76 +0.5 516,376 - MPMX19_00512 0.76 -2.2 516,376 - MPMX19_00512 0.76 -1.0 516,376 - MPMX19_00512 0.76 -0.3 516,412 - MPMX19_00512 0.78 -0.7 516,783 + -0.9 516,783 + -1.9 516,783 + +0.3 516,783 + +0.5 516,784 - -0.8 516,784 - +0.0 516,784 - -0.2 516,790 - +0.2 516,790 - +0.0 516,815 + -1.0 516,815 + -0.7 516,815 + +1.6 516,815 + +0.6 516,816 - -0.5 516,827 + -0.2 516,827 + -0.9 516,828 - +1.6 516,842 - -1.3 516,842 - -0.5 516,884 + -1.4 516,919 + +0.6 516,919 + -0.4 516,919 + -1.3 516,920 - +0.9 516,977 + -0.7 516,977 + +0.3 516,977 + -0.7 516,977 + -1.0 516,977 + +0.1 516,977 + -1.9 516,977 + -0.4 516,977 + -0.9 516,977 + -0.7 516,977 + +1.2 516,977 + +0.2 516,977 + -2.0 516,977 + -0.7 516,977 + +0.6 516,977 - -0.9 516,978 - -0.6 516,978 - -0.8 516,978 - +0.9 516,978 - +0.8 516,978 - -1.2 516,978 - -0.3 516,984 + -0.7 516,984 + +1.1 516,984 + -0.4 516,984 + +0.4 516,984 + -1.0 516,984 + -1.9 516,985 - -1.4 516,985 - -0.4 516,985 - +0.1 516,985 - -1.1 516,985 - +0.0 516,985 - -0.5 516,985 - +0.0 516,985 - -1.0 516,985 - +1.0 516,985 - -1.2 516,985 - -0.4 516,985 - -0.7 516,990 + -1.0 517,251 + MPMX19_00513 0.16 -1.1 517,251 + MPMX19_00513 0.16 -1.5 517,251 + MPMX19_00513 0.16 -1.0 517,251 + MPMX19_00513 0.16 -0.7 517,251 + MPMX19_00513 0.16 -0.6 517,251 + MPMX19_00513 0.16 +1.6 517,251 + MPMX19_00513 0.16 -1.9 517,251 + MPMX19_00513 0.16 -1.6 517,251 + MPMX19_00513 0.16 +0.0 517,252 - MPMX19_00513 0.16 -1.1 517,252 - MPMX19_00513 0.16 -1.6 517,252 - MPMX19_00513 0.16 +0.4 517,252 - MPMX19_00513 0.16 -0.9 517,252 - MPMX19_00513 0.16 -0.7 517,252 - MPMX19_00513 0.16 +1.2 517,252 - MPMX19_00513 0.16 -1.9 517,252 - MPMX19_00513 0.16 -1.6 517,252 - MPMX19_00513 0.16 +0.5 517,252 - MPMX19_00513 0.16 -1.0 517,252 - MPMX19_00513 0.16 -0.1 517,252 - MPMX19_00513 0.16 -1.6 517,252 - MPMX19_00513 0.16 -2.2 517,252 - MPMX19_00513 0.16 -0.4 518,210 + MPMX19_00513 0.81 -0.4 518,210 + MPMX19_00513 0.81 +0.0 518,210 + MPMX19_00513 0.81 -2.4 518,210 + MPMX19_00513 0.81 +0.4 518,210 + MPMX19_00513 0.81 -1.2 518,210 + MPMX19_00513 0.81 -0.7 518,210 + MPMX19_00513 0.81 +0.6 518,210 + MPMX19_00513 0.81 +0.0 518,210 + MPMX19_00513 0.81 -0.6 518,211 - MPMX19_00513 0.81 +0.1 518,211 - MPMX19_00513 0.81 -0.4 518,211 - MPMX19_00513 0.81 +1.6 518,211 - MPMX19_00513 0.81 -0.6 518,211 - MPMX19_00513 0.81 +1.6 518,211 - MPMX19_00513 0.81 -1.0 518,211 - MPMX19_00513 0.81 -2.3 518,211 - MPMX19_00513 0.81 -1.0 518,211 - MPMX19_00513 0.81 -1.3 518,211 - MPMX19_00513 0.81 -1.2 518,409 - +0.1 518,529 + -0.2 518,529 + -0.3 518,529 + +2.2 518,529 + -0.1 518,529 + +0.8 518,530 - -0.9 518,530 - -0.4 518,540 + -2.5 518,540 + -0.3 518,541 - -2.6 518,554 + -0.2 518,555 - -1.5 518,604 + +0.6 518,605 - -0.7 518,605 - -1.5 518,651 - +0.2 518,673 + -0.1 518,722 + -0.8 518,722 + -0.2 518,723 - -0.7 518,738 + -1.1 518,739 - -0.5 519,073 + MPMX19_00514 0.12 +0.0 519,400 + MPMX19_00514 0.27 -1.1 519,400 + MPMX19_00514 0.27 -0.4 519,400 + MPMX19_00514 0.27 +1.6 519,400 + MPMX19_00514 0.27 +0.0 519,400 + MPMX19_00514 0.27 +1.6 519,400 + MPMX19_00514 0.27 -1.0 519,400 + MPMX19_00514 0.27 -2.9 519,400 + MPMX19_00514 0.27 -0.8 519,400 + MPMX19_00514 0.27 -0.7 519,400 + MPMX19_00514 0.27 +0.3 519,400 + MPMX19_00514 0.27 -2.0 519,401 - MPMX19_00514 0.27 -0.7 519,401 - MPMX19_00514 0.27 +0.0 519,401 - MPMX19_00514 0.27 -0.4 519,401 - MPMX19_00514 0.27 -0.5 519,401 - MPMX19_00514 0.27 +0.8 519,401 - MPMX19_00514 0.27 -0.7 519,401 - MPMX19_00514 0.27 -1.2 519,401 - MPMX19_00514 0.27 +1.0 519,401 - MPMX19_00514 0.27 -2.7 519,430 + MPMX19_00514 0.28 +0.4 519,430 + MPMX19_00514 0.28 -1.4 519,430 + MPMX19_00514 0.28 +0.0 519,430 + MPMX19_00514 0.28 -0.4 519,430 + MPMX19_00514 0.28 -0.8 519,430 + MPMX19_00514 0.28 -1.1 519,430 + MPMX19_00514 0.28 -0.7 519,430 + MPMX19_00514 0.28 -1.2 519,430 + MPMX19_00514 0.28 -1.5 519,430 + MPMX19_00514 0.28 -0.7 519,430 + MPMX19_00514 0.28 -0.8 519,430 + MPMX19_00514 0.28 -0.8 519,430 + MPMX19_00514 0.28 -1.4 519,430 + MPMX19_00514 0.28 +1.2 519,430 + MPMX19_00514 0.28 +0.0 519,430 + MPMX19_00514 0.28 -3.2 519,430 + MPMX19_00514 0.28 -0.7 519,431 - MPMX19_00514 0.28 -0.9 519,431 - MPMX19_00514 0.28 -0.7 519,431 - MPMX19_00514 0.28 +0.0 519,431 - MPMX19_00514 0.28 -1.6 519,431 - MPMX19_00514 0.28 -0.4 519,431 - MPMX19_00514 0.28 -1.4 519,431 - MPMX19_00514 0.28 -0.4 519,431 - MPMX19_00514 0.28 -0.5 519,431 - MPMX19_00514 0.28 -1.4 519,431 - MPMX19_00514 0.28 +0.6 519,431 - MPMX19_00514 0.28 -1.0 519,431 - MPMX19_00514 0.28 -1.0 519,431 - MPMX19_00514 0.28 +1.2 519,431 - MPMX19_00514 0.28 -0.7 519,431 - MPMX19_00514 0.28 -1.2 519,431 - MPMX19_00514 0.28 +0.0 519,431 - MPMX19_00514 0.28 -1.0 519,431 - MPMX19_00514 0.28 -2.0 519,431 - MPMX19_00514 0.28 -1.2 519,431 - MPMX19_00514 0.28 +0.6 519,431 - MPMX19_00514 0.28 -0.4 519,442 + MPMX19_00514 0.28 +0.3 519,442 + MPMX19_00514 0.28 -0.6 519,442 + MPMX19_00514 0.28 -1.0 519,442 + MPMX19_00514 0.28 -0.7 519,442 + MPMX19_00514 0.28 +0.8 519,442 + MPMX19_00514 0.28 -0.7 519,443 - MPMX19_00514 0.29 -1.1 519,443 - MPMX19_00514 0.29 +0.6 519,443 - MPMX19_00514 0.29 -1.7 519,443 - MPMX19_00514 0.29 -1.2 519,443 - MPMX19_00514 0.29 -1.0 519,478 + MPMX19_00514 0.30 -0.4 519,478 + MPMX19_00514 0.30 +0.3 519,478 + MPMX19_00514 0.30 -1.2 519,478 + MPMX19_00514 0.30 +0.3 519,479 - MPMX19_00514 0.30 +0.0 519,479 - MPMX19_00514 0.30 -0.7 519,479 - MPMX19_00514 0.30 -1.6 519,479 - MPMX19_00514 0.30 +0.0
Or see this region's nucleotide sequence