Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00309

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00308 and MPMX19_00309 are separated by 9 nucleotidesMPMX19_00309 and MPMX19_00310 are separated by 213 nucleotides MPMX19_00308: MPMX19_00308 - NAD-dependent methanol dehydrogenase, at 310,780 to 312,096 _00308 MPMX19_00309: MPMX19_00309 - hypothetical protein, at 312,106 to 312,552 _00309 MPMX19_00310: MPMX19_00310 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 312,766 to 314,562 _00310 Position (kb) 312 313Strain fitness (log2 ratio) -2 -1 0 1 2 3at 311.152 kb on + strand, within MPMX19_00308at 311.152 kb on + strand, within MPMX19_00308at 311.153 kb on - strand, within MPMX19_00308at 311.153 kb on - strand, within MPMX19_00308at 311.153 kb on - strand, within MPMX19_00308at 311.153 kb on - strand, within MPMX19_00308at 311.153 kb on - strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.182 kb on + strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.183 kb on - strand, within MPMX19_00308at 311.338 kb on + strand, within MPMX19_00308at 311.338 kb on + strand, within MPMX19_00308at 311.338 kb on + strand, within MPMX19_00308at 311.338 kb on + strand, within MPMX19_00308at 311.338 kb on + strand, within MPMX19_00308at 311.338 kb on + strand, within MPMX19_00308at 311.339 kb on - strand, within MPMX19_00308at 311.339 kb on - strand, within MPMX19_00308at 311.339 kb on - strand, within MPMX19_00308at 311.339 kb on - strand, within MPMX19_00308at 311.339 kb on - strand, within MPMX19_00308at 311.506 kb on + strand, within MPMX19_00308at 311.506 kb on + strand, within MPMX19_00308at 311.507 kb on - strand, within MPMX19_00308at 311.507 kb on - strand, within MPMX19_00308at 311.692 kb on + strand, within MPMX19_00308at 311.692 kb on + strand, within MPMX19_00308at 311.692 kb on + strand, within MPMX19_00308at 311.692 kb on + strand, within MPMX19_00308at 311.693 kb on - strand, within MPMX19_00308at 311.693 kb on - strand, within MPMX19_00308at 311.734 kb on + strand, within MPMX19_00308at 311.735 kb on - strand, within MPMX19_00308at 311.735 kb on - strand, within MPMX19_00308at 311.735 kb on - strand, within MPMX19_00308at 312.070 kb on + strandat 312.070 kb on + strandat 312.070 kb on + strandat 312.070 kb on + strandat 312.070 kb on + strandat 312.070 kb on + strandat 312.071 kb on - strandat 312.071 kb on - strandat 312.071 kb on - strandat 312.071 kb on - strandat 312.088 kb on + strandat 312.088 kb on + strandat 312.089 kb on - strandat 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.200 kb on + strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.201 kb on - strand, within MPMX19_00309at 312.314 kb on + strand, within MPMX19_00309at 312.314 kb on + strand, within MPMX19_00309at 312.314 kb on + strand, within MPMX19_00309at 312.314 kb on + strand, within MPMX19_00309at 312.314 kb on + strand, within MPMX19_00309at 312.315 kb on - strand, within MPMX19_00309at 312.315 kb on - strand, within MPMX19_00309at 312.315 kb on - strand, within MPMX19_00309at 312.455 kb on + strand, within MPMX19_00309at 312.455 kb on + strand, within MPMX19_00309at 312.455 kb on + strand, within MPMX19_00309at 312.455 kb on + strand, within MPMX19_00309at 312.455 kb on + strand, within MPMX19_00309at 312.455 kb on + strand, within MPMX19_00309at 312.456 kb on - strand, within MPMX19_00309at 312.456 kb on - strand, within MPMX19_00309at 312.456 kb on - strand, within MPMX19_00309at 312.597 kb on + strandat 312.598 kb on - strandat 312.598 kb on - strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.630 kb on + strandat 312.631 kb on - strandat 312.631 kb on - strandat 312.631 kb on - strandat 312.631 kb on - strandat 312.631 kb on - strandat 312.631 kb on - strandat 312.631 kb on - strandat 312.631 kb on - strandat 312.860 kb on + strandat 312.860 kb on + strandat 312.861 kb on - strandat 312.861 kb on - strandat 312.861 kb on - strandat 312.861 kb on - strandat 312.975 kb on + strand, within MPMX19_00310at 312.975 kb on + strand, within MPMX19_00310at 312.975 kb on + strand, within MPMX19_00310at 312.976 kb on - strand, within MPMX19_00310at 312.992 kb on + strand, within MPMX19_00310at 312.992 kb on + strand, within MPMX19_00310at 312.992 kb on + strand, within MPMX19_00310at 312.993 kb on - strand, within MPMX19_00310at 312.993 kb on - strand, within MPMX19_00310at 313.250 kb on + strand, within MPMX19_00310at 313.250 kb on + strand, within MPMX19_00310at 313.250 kb on + strand, within MPMX19_00310at 313.250 kb on + strand, within MPMX19_00310at 313.250 kb on + strand, within MPMX19_00310at 313.250 kb on + strand, within MPMX19_00310at 313.251 kb on - strand, within MPMX19_00310at 313.251 kb on - strand, within MPMX19_00310at 313.251 kb on - strand, within MPMX19_00310at 313.251 kb on - strand, within MPMX19_00310at 313.251 kb on - strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.472 kb on + strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310at 313.473 kb on - strand, within MPMX19_00310

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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311,152 + MPMX19_00308 0.28 -0.6
311,152 + MPMX19_00308 0.28 -1.7
311,153 - MPMX19_00308 0.28 -1.2
311,153 - MPMX19_00308 0.28 -0.2
311,153 - MPMX19_00308 0.28 -0.7
311,153 - MPMX19_00308 0.28 +1.6
311,153 - MPMX19_00308 0.28 +1.2
311,182 + MPMX19_00308 0.31 -1.7
311,182 + MPMX19_00308 0.31 -1.0
311,182 + MPMX19_00308 0.31 +0.8
311,182 + MPMX19_00308 0.31 -1.4
311,182 + MPMX19_00308 0.31 -1.4
311,182 + MPMX19_00308 0.31 -1.5
311,182 + MPMX19_00308 0.31 +0.6
311,182 + MPMX19_00308 0.31 +0.4
311,182 + MPMX19_00308 0.31 -1.9
311,182 + MPMX19_00308 0.31 +0.6
311,182 + MPMX19_00308 0.31 -1.6
311,182 + MPMX19_00308 0.31 -0.2
311,182 + MPMX19_00308 0.31 -0.1
311,182 + MPMX19_00308 0.31 -0.7
311,182 + MPMX19_00308 0.31 -1.8
311,182 + MPMX19_00308 0.31 -0.6
311,182 + MPMX19_00308 0.31 +0.2
311,182 + MPMX19_00308 0.31 -0.4
311,182 + MPMX19_00308 0.31 -1.4
311,183 - MPMX19_00308 0.31 -0.9
311,183 - MPMX19_00308 0.31 -1.2
311,183 - MPMX19_00308 0.31 +0.6
311,183 - MPMX19_00308 0.31 -0.7
311,183 - MPMX19_00308 0.31 -0.2
311,183 - MPMX19_00308 0.31 +0.6
311,183 - MPMX19_00308 0.31 +0.6
311,183 - MPMX19_00308 0.31 -1.4
311,183 - MPMX19_00308 0.31 -0.7
311,183 - MPMX19_00308 0.31 -1.2
311,183 - MPMX19_00308 0.31 -1.4
311,183 - MPMX19_00308 0.31 -1.2
311,183 - MPMX19_00308 0.31 +0.1
311,183 - MPMX19_00308 0.31 +0.6
311,183 - MPMX19_00308 0.31 -0.6
311,183 - MPMX19_00308 0.31 -0.0
311,338 + MPMX19_00308 0.42 -1.4
311,338 + MPMX19_00308 0.42 +0.4
311,338 + MPMX19_00308 0.42 +0.2
311,338 + MPMX19_00308 0.42 +1.2
311,338 + MPMX19_00308 0.42 -1.0
311,338 + MPMX19_00308 0.42 +1.6
311,339 - MPMX19_00308 0.42 -0.2
311,339 - MPMX19_00308 0.42 +0.3
311,339 - MPMX19_00308 0.42 +0.6
311,339 - MPMX19_00308 0.42 -1.4
311,339 - MPMX19_00308 0.42 +0.6
311,506 + MPMX19_00308 0.55 -1.0
311,506 + MPMX19_00308 0.55 -1.9
311,507 - MPMX19_00308 0.55 +0.3
311,507 - MPMX19_00308 0.55 -1.6
311,692 + MPMX19_00308 0.69 +0.2
311,692 + MPMX19_00308 0.69 -1.4
311,692 + MPMX19_00308 0.69 +0.3
311,692 + MPMX19_00308 0.69 +0.6
311,693 - MPMX19_00308 0.69 -0.3
311,693 - MPMX19_00308 0.69 -1.4
311,734 + MPMX19_00308 0.72 +2.8
311,735 - MPMX19_00308 0.73 -2.0
311,735 - MPMX19_00308 0.73 -0.0
311,735 - MPMX19_00308 0.73 +2.0
312,070 + +0.3
312,070 + -2.5
312,070 + -1.2
312,070 + -1.6
312,070 + -0.7
312,070 + -0.0
312,071 - -1.2
312,071 - +1.3
312,071 - -0.0
312,071 - -0.4
312,088 + -0.0
312,088 + +0.8
312,089 - +0.6
312,200 + MPMX19_00309 0.21 +0.2
312,200 + MPMX19_00309 0.21 -0.0
312,200 + MPMX19_00309 0.21 -0.7
312,200 + MPMX19_00309 0.21 +0.6
312,200 + MPMX19_00309 0.21 +0.4
312,200 + MPMX19_00309 0.21 +1.6
312,200 + MPMX19_00309 0.21 +0.6
312,200 + MPMX19_00309 0.21 +0.2
312,200 + MPMX19_00309 0.21 +0.6
312,200 + MPMX19_00309 0.21 -0.0
312,200 + MPMX19_00309 0.21 -0.2
312,200 + MPMX19_00309 0.21 -2.3
312,200 + MPMX19_00309 0.21 -1.4
312,200 + MPMX19_00309 0.21 -0.0
312,201 - MPMX19_00309 0.21 +0.4
312,201 - MPMX19_00309 0.21 -1.2
312,201 - MPMX19_00309 0.21 -1.0
312,201 - MPMX19_00309 0.21 -0.5
312,201 - MPMX19_00309 0.21 -1.0
312,201 - MPMX19_00309 0.21 +0.2
312,201 - MPMX19_00309 0.21 -1.7
312,201 - MPMX19_00309 0.21 +0.4
312,201 - MPMX19_00309 0.21 -1.0
312,201 - MPMX19_00309 0.21 -0.0
312,201 - MPMX19_00309 0.21 -0.8
312,201 - MPMX19_00309 0.21 -0.4
312,201 - MPMX19_00309 0.21 +1.2
312,201 - MPMX19_00309 0.21 -0.4
312,314 + MPMX19_00309 0.47 -0.7
312,314 + MPMX19_00309 0.47 -0.2
312,314 + MPMX19_00309 0.47 -1.2
312,314 + MPMX19_00309 0.47 -0.0
312,314 + MPMX19_00309 0.47 -1.7
312,315 - MPMX19_00309 0.47 -1.2
312,315 - MPMX19_00309 0.47 -0.4
312,315 - MPMX19_00309 0.47 +1.0
312,455 + MPMX19_00309 0.78 -0.7
312,455 + MPMX19_00309 0.78 -0.2
312,455 + MPMX19_00309 0.78 -0.0
312,455 + MPMX19_00309 0.78 -0.3
312,455 + MPMX19_00309 0.78 +0.6
312,455 + MPMX19_00309 0.78 -1.4
312,456 - MPMX19_00309 0.78 -0.0
312,456 - MPMX19_00309 0.78 -1.4
312,456 - MPMX19_00309 0.78 -1.9
312,597 + +0.3
312,598 - -0.2
312,598 - -0.4
312,630 + +0.2
312,630 + -1.0
312,630 + -0.9
312,630 + +1.3
312,630 + -0.0
312,630 + -1.4
312,630 + +0.6
312,630 + -1.7
312,630 + +0.3
312,630 + -0.2
312,630 + -0.0
312,630 + -1.6
312,630 + -0.0
312,631 - -0.6
312,631 - -1.5
312,631 - -1.7
312,631 - -1.4
312,631 - -1.0
312,631 - -0.4
312,631 - -1.9
312,631 - -0.7
312,860 + -1.2
312,860 + -0.3
312,861 - -0.4
312,861 - -1.0
312,861 - -0.6
312,861 - -0.2
312,975 + MPMX19_00310 0.12 -0.7
312,975 + MPMX19_00310 0.12 -1.4
312,975 + MPMX19_00310 0.12 +0.6
312,976 - MPMX19_00310 0.12 -0.0
312,992 + MPMX19_00310 0.13 -0.7
312,992 + MPMX19_00310 0.13 +0.8
312,992 + MPMX19_00310 0.13 -2.1
312,993 - MPMX19_00310 0.13 -0.4
312,993 - MPMX19_00310 0.13 -1.9
313,250 + MPMX19_00310 0.27 -0.0
313,250 + MPMX19_00310 0.27 -1.4
313,250 + MPMX19_00310 0.27 -0.3
313,250 + MPMX19_00310 0.27 +0.6
313,250 + MPMX19_00310 0.27 -1.4
313,250 + MPMX19_00310 0.27 -0.3
313,251 - MPMX19_00310 0.27 -1.6
313,251 - MPMX19_00310 0.27 -1.4
313,251 - MPMX19_00310 0.27 -0.7
313,251 - MPMX19_00310 0.27 +0.6
313,251 - MPMX19_00310 0.27 +0.6
313,472 + MPMX19_00310 0.39 -0.4
313,472 + MPMX19_00310 0.39 +0.3
313,472 + MPMX19_00310 0.39 -1.3
313,472 + MPMX19_00310 0.39 -1.7
313,472 + MPMX19_00310 0.39 +0.7
313,472 + MPMX19_00310 0.39 +0.3
313,472 + MPMX19_00310 0.39 +0.6
313,472 + MPMX19_00310 0.39 -0.7
313,472 + MPMX19_00310 0.39 -0.4
313,472 + MPMX19_00310 0.39 -0.7
313,472 + MPMX19_00310 0.39 -0.4
313,473 - MPMX19_00310 0.39 -0.6
313,473 - MPMX19_00310 0.39 -1.0
313,473 - MPMX19_00310 0.39 -0.0
313,473 - MPMX19_00310 0.39 -0.4
313,473 - MPMX19_00310 0.39 -1.0
313,473 - MPMX19_00310 0.39 -0.3
313,473 - MPMX19_00310 0.39 -0.1
313,473 - MPMX19_00310 0.39 +0.6
313,473 - MPMX19_00310 0.39 -0.6
313,473 - MPMX19_00310 0.39 -0.0
313,473 - MPMX19_00310 0.39 -1.7
313,473 - MPMX19_00310 0.39 +1.0
313,473 - MPMX19_00310 0.39 -0.4
313,473 - MPMX19_00310 0.39 +1.0
313,473 - MPMX19_00310 0.39 +0.6

Or see this region's nucleotide sequence