Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15935

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15930 and A4249_RS15935 are separated by 41 nucleotidesA4249_RS15935 and A4249_RS15940 are separated by 128 nucleotides A4249_RS15930: A4249_RS15930 - DUF3667 domain-containing protein, at 3,213,590 to 3,214,732 _RS15930 A4249_RS15935: A4249_RS15935 - tol-pal system protein, at 3,214,774 to 3,215,619 _RS15935 A4249_RS15940: A4249_RS15940 - tRNA lysidine(34) synthetase TilS, at 3,215,748 to 3,216,866 _RS15940 Position (kb) 3214 3215 3216Strain fitness (log2 ratio) -1 0 1at 3214.355 kb on + strand, within A4249_RS15930at 3214.356 kb on - strand, within A4249_RS15930at 3214.356 kb on - strand, within A4249_RS15930at 3214.357 kb on + strand, within A4249_RS15930at 3214.357 kb on + strand, within A4249_RS15930at 3214.357 kb on + strand, within A4249_RS15930at 3214.357 kb on + strand, within A4249_RS15930at 3214.358 kb on - strand, within A4249_RS15930at 3214.358 kb on - strand, within A4249_RS15930at 3214.358 kb on - strand, within A4249_RS15930at 3214.358 kb on - strand, within A4249_RS15930at 3214.358 kb on - strand, within A4249_RS15930at 3214.376 kb on + strand, within A4249_RS15930at 3214.376 kb on + strand, within A4249_RS15930at 3214.376 kb on + strand, within A4249_RS15930at 3214.376 kb on + strand, within A4249_RS15930at 3214.377 kb on - strand, within A4249_RS15930at 3214.377 kb on - strand, within A4249_RS15930at 3214.377 kb on - strand, within A4249_RS15930at 3214.457 kb on + strand, within A4249_RS15930at 3214.457 kb on + strand, within A4249_RS15930at 3214.458 kb on - strand, within A4249_RS15930at 3214.481 kb on + strand, within A4249_RS15930at 3214.481 kb on + strand, within A4249_RS15930at 3214.481 kb on + strand, within A4249_RS15930at 3214.619 kb on + strandat 3214.619 kb on + strandat 3214.619 kb on + strandat 3214.619 kb on + strandat 3214.712 kb on + strandat 3214.712 kb on + strandat 3214.712 kb on + strandat 3214.713 kb on - strandat 3214.713 kb on - strandat 3214.713 kb on - strandat 3214.730 kb on + strandat 3214.731 kb on - strandat 3214.768 kb on - strandat 3214.768 kb on - strandat 3214.768 kb on - strandat 3215.413 kb on + strand, within A4249_RS15935at 3215.463 kb on + strand, within A4249_RS15935

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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3,214,355 + A4249_RS15930 0.67 +0.2
3,214,356 - A4249_RS15930 0.67 +0.8
3,214,356 - A4249_RS15930 0.67 -0.7
3,214,357 + A4249_RS15930 0.67 -0.2
3,214,357 + A4249_RS15930 0.67 -0.4
3,214,357 + A4249_RS15930 0.67 -0.2
3,214,357 + A4249_RS15930 0.67 +0.2
3,214,358 - A4249_RS15930 0.67 -0.1
3,214,358 - A4249_RS15930 0.67 +0.4
3,214,358 - A4249_RS15930 0.67 +0.7
3,214,358 - A4249_RS15930 0.67 -0.1
3,214,358 - A4249_RS15930 0.67 +0.0
3,214,376 + A4249_RS15930 0.69 +0.4
3,214,376 + A4249_RS15930 0.69 +0.4
3,214,376 + A4249_RS15930 0.69 +0.2
3,214,376 + A4249_RS15930 0.69 +0.3
3,214,377 - A4249_RS15930 0.69 -0.2
3,214,377 - A4249_RS15930 0.69 -0.1
3,214,377 - A4249_RS15930 0.69 +0.7
3,214,457 + A4249_RS15930 0.76 -0.0
3,214,457 + A4249_RS15930 0.76 +0.2
3,214,458 - A4249_RS15930 0.76 +0.7
3,214,481 + A4249_RS15930 0.78 -0.2
3,214,481 + A4249_RS15930 0.78 -0.8
3,214,481 + A4249_RS15930 0.78 +0.3
3,214,619 + +0.6
3,214,619 + -0.2
3,214,619 + +0.2
3,214,619 + -1.1
3,214,712 + -0.6
3,214,712 + -0.2
3,214,712 + +0.9
3,214,713 - -0.9
3,214,713 - +0.6
3,214,713 - -0.3
3,214,730 + -0.1
3,214,731 - +0.3
3,214,768 - +0.5
3,214,768 - +0.1
3,214,768 - +0.2
3,215,413 + A4249_RS15935 0.76 -0.6
3,215,463 + A4249_RS15935 0.81 +0.4

Or see this region's nucleotide sequence